Wall clock time and date at job start Sat Apr 11 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40447 * 126.82130 * 2 1 4 4 C 1.30709 * 106.79166 * 180.02562 * 3 2 1 5 5 N 1.33249 * 108.94587 * 359.76298 * 4 3 2 6 6 C 1.30828 * 109.82901 * 0.40525 * 5 4 3 7 7 C 1.50699 * 125.96221 * 179.87099 * 6 5 4 8 8 N 1.46902 * 109.46811 * 269.68214 * 7 6 5 9 9 C 1.46849 * 110.99983 * 66.04321 * 8 7 6 10 10 C 1.53038 * 109.52243 * 185.83707 * 9 8 7 11 11 C 1.53119 * 109.28082 * 300.82303 * 10 9 8 12 12 C 1.53118 * 109.15841 * 57.65504 * 11 10 9 13 13 H 1.08996 * 109.50190 * 62.32806 * 12 11 10 14 14 N 1.46504 * 109.49993 * 182.40666 * 12 11 10 15 15 C 1.34779 * 119.99957 * 274.99601 * 14 12 11 16 16 O 1.21281 * 119.99517 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00222 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47406 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47035 * 60.00421 * 23 21 19 25 25 H 1.48503 * 109.46845 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47237 * 300.00177 * 23 21 19 27 27 C 1.46846 * 111.00012 * 190.25625 * 8 7 6 28 28 H 1.08999 * 109.47447 * 269.95828 * 1 2 3 29 29 H 1.08995 * 109.46838 * 29.96126 * 1 2 3 30 30 H 1.09001 * 109.46760 * 149.95904 * 1 2 3 31 31 H 1.08002 * 125.52939 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47383 * 149.68091 * 7 6 5 33 33 H 1.08994 * 109.47364 * 29.68094 * 7 6 5 34 34 H 1.09004 * 109.46207 * 65.82297 * 9 8 7 35 35 H 1.08997 * 109.46464 * 305.85601 * 9 8 7 36 36 H 1.09002 * 109.50082 * 180.88070 * 10 9 8 37 37 H 1.09002 * 109.50142 * 60.76753 * 10 9 8 38 38 H 1.09009 * 109.52190 * 297.74948 * 11 10 9 39 39 H 1.08994 * 109.51998 * 177.56127 * 11 10 9 40 40 H 0.96999 * 120.00526 * 94.99866 * 14 12 11 41 41 H 1.09005 * 109.46836 * 60.00415 * 17 15 14 42 42 H 1.08996 * 109.47837 * 300.00838 * 17 15 14 43 43 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 44 44 H 1.08994 * 109.46533 * 54.14349 * 27 8 7 45 45 H 1.09004 * 109.46340 * 294.17384 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 7 3.5096 -0.6556 0.0043 6 6 2.2707 -1.0761 -0.0007 7 6 1.8247 -2.5156 -0.0004 8 7 1.6788 -2.9832 -1.3853 9 6 2.9785 -3.0202 -2.0680 10 6 2.7714 -3.3701 -3.5433 11 6 2.0801 -4.7324 -3.6477 12 6 0.7517 -4.6812 -2.8878 13 1 0.0972 -3.9414 -3.3486 14 7 0.1108 -5.9978 -2.9343 15 6 -0.6550 -6.3377 -3.9900 16 8 -0.8131 -5.5537 -4.9017 17 6 -1.3138 -7.6921 -4.0381 18 16 -2.2659 -7.8460 -5.5698 19 6 -2.9094 -9.4738 -5.3679 20 1 -2.6676 -10.0442 -4.4832 21 6 -3.7279 -10.0227 -6.3453 22 7 -4.0189 -9.3292 -7.4256 23 14 -4.4095 -11.7487 -6.1315 24 1 -5.2353 -11.8056 -4.8986 25 1 -5.2490 -12.0982 -7.3056 26 1 -3.2866 -12.7141 -6.0202 27 6 1.0172 -4.2934 -1.4314 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 4.4255 1.2874 -0.0003 32 1 0.8674 -2.5993 0.5142 33 1 2.5676 -3.1261 0.5128 34 1 3.6124 -3.7742 -1.6014 35 1 3.4576 -2.0443 -1.9899 36 1 3.7375 -3.4128 -4.0462 37 1 2.1489 -2.6091 -4.0139 38 1 2.7198 -5.4999 -3.2118 39 1 1.8916 -4.9658 -4.6955 40 1 0.2375 -6.6250 -2.2052 41 1 -1.9806 -7.8023 -3.1828 42 1 -0.5501 -8.4691 -4.0058 43 1 -3.6647 -8.4331 -7.5367 44 1 0.0720 -4.2422 -0.8911 45 1 1.6604 -5.0415 -0.9679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267909849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:32 Heat of formation + Delta-G solvation = 53.510688 kcal Electronic energy + Delta-G solvation = -26520.004864 eV Core-core repulsion = 22700.461098 eV Total energy + Delta-G solvation = -3819.543766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49830 -40.05812 -38.58906 -35.23670 -34.40591 -33.30101 -32.54981 -31.64680 -30.58291 -28.51931 -28.00652 -26.95997 -24.87341 -23.61149 -23.19463 -22.33444 -20.78950 -20.37839 -20.12133 -18.36078 -17.44300 -17.01353 -16.63593 -16.27140 -15.58415 -15.40939 -15.16607 -15.07856 -14.85463 -14.55497 -14.10096 -13.90091 -13.84859 -13.61644 -13.52533 -13.35272 -13.28554 -12.98712 -12.45323 -12.40294 -12.14042 -12.04147 -11.87404 -11.63013 -11.14496 -11.03565 -10.93710 -10.78439 -10.39602 -10.19255 -10.09219 -9.98359 -9.60855 -9.52430 -9.06492 -9.00437 -8.90432 -8.24875 -6.69611 -6.64170 -4.02336 1.16981 1.92742 2.47790 2.83104 2.95180 3.26988 3.35893 3.36122 3.55565 3.63886 3.76806 4.09291 4.22976 4.28562 4.40696 4.56907 4.65598 4.70799 4.77117 4.81787 4.96540 4.97272 5.01018 5.04602 5.12671 5.18746 5.20375 5.33105 5.38552 5.47696 5.62314 5.64258 5.73826 5.85431 5.88070 5.97949 6.05899 6.08056 6.12889 6.29808 6.42369 6.46047 6.63405 7.57469 7.71876 7.89361 8.47681 8.48133 9.24820 10.79655 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.001869 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.998973 B =14974.423820 C =15221.813498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.366 5.366 3 N -0.321 5.321 4 C 0.198 3.802 5 N -0.542 5.542 6 C 0.288 3.712 7 C 0.132 3.868 8 N -0.532 5.532 9 C 0.053 3.947 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.153 3.847 13 H 0.097 0.903 14 N -0.734 5.734 15 C 0.533 3.467 16 O -0.514 6.514 17 C -0.131 4.131 18 S -0.115 6.115 19 C -0.608 4.608 20 H 0.065 0.935 21 C 0.035 3.965 22 N -0.883 5.883 23 Si 1.084 2.916 24 H -0.285 1.285 25 H -0.278 1.278 26 H -0.285 1.285 27 C 0.053 3.947 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.217 0.783 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.084 0.916 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.211 15.372 19.411 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.157 5.157 3 N -0.149 5.149 4 C -0.105 4.105 5 N -0.270 5.270 6 C 0.011 3.989 7 C 0.002 3.998 8 N -0.258 5.258 9 C -0.075 4.075 10 C -0.151 4.151 11 C -0.172 4.172 12 C 0.047 3.953 13 H 0.115 0.885 14 N -0.388 5.388 15 C 0.319 3.681 16 O -0.388 6.388 17 C -0.282 4.282 18 S 0.111 5.889 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.517 5.517 23 Si 0.910 3.090 24 H -0.211 1.211 25 H -0.203 1.203 26 H -0.211 1.211 27 C -0.075 4.075 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.233 0.767 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.680 16.455 16.905 26.783 hybrid contribution 1.610 -0.792 2.734 3.271 sum 14.290 15.663 19.639 28.900 Atomic orbital electron populations 1.22038 0.73414 1.05709 1.03741 1.50195 1.08164 1.03778 1.53551 1.78072 1.02178 1.08292 1.26407 1.25944 0.95809 0.90359 0.98363 1.70477 1.19565 1.11653 1.25348 1.23996 0.86201 0.92229 0.96472 1.20476 1.02120 0.86094 0.91147 1.61752 1.23497 1.27261 1.13260 1.22251 0.88611 1.02150 0.94444 1.21538 1.01015 0.97328 0.95252 1.22017 0.95959 0.97230 1.02001 1.20781 0.94505 0.85648 0.94364 0.88518 1.45969 1.52029 1.17278 1.23559 1.20262 0.77652 0.88723 0.81428 1.90710 1.60202 1.51828 1.36075 1.23318 1.02897 0.96027 1.05989 1.84834 1.60607 1.22501 1.20966 1.23699 1.39375 1.00544 1.12003 0.91626 1.26057 0.94025 1.05604 0.91865 1.70799 1.41858 1.12745 1.26332 0.83332 0.76359 0.73070 0.76256 1.21144 1.20267 1.21135 1.22287 0.99325 0.88927 0.97010 0.90232 0.88799 0.88189 0.76668 0.88272 0.90557 0.94112 0.89674 0.90941 0.90949 0.91988 0.90680 0.76922 0.88974 0.88983 0.90984 0.89729 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.16 59.85 0.67 1.16 16 2 N -0.37 -3.24 4.04 -65.10 -0.26 -3.50 16 3 N -0.32 -3.35 12.70 29.29 0.37 -2.98 16 4 C 0.20 1.82 13.03 -91.81 -1.20 0.63 16 5 N -0.54 -5.46 10.31 -11.97 -0.12 -5.58 16 6 C 0.29 2.54 6.61 -155.70 -1.03 1.51 16 7 C 0.13 0.84 5.09 -4.98 -0.03 0.82 16 8 N -0.53 -4.10 4.65 -236.11 -1.10 -5.20 16 9 C 0.05 0.45 5.31 -3.83 -0.02 0.43 16 10 C -0.11 -1.06 6.09 -26.65 -0.16 -1.22 16 11 C -0.13 -1.43 5.58 -26.61 -0.15 -1.58 16 12 C 0.15 1.64 2.62 -67.85 -0.18 1.46 16 13 H 0.10 1.31 7.58 -51.93 -0.39 0.91 16 14 N -0.73 -8.81 5.08 -53.73 -0.27 -9.08 16 15 C 0.53 9.36 7.81 -10.99 -0.09 9.27 16 16 O -0.51 -11.14 15.53 5.56 0.09 -11.06 16 17 C -0.13 -2.55 6.16 36.00 0.22 -2.32 16 18 S -0.12 -3.05 19.60 -107.50 -2.11 -5.16 16 19 C -0.61 -17.31 9.50 30.94 0.29 -17.02 16 20 H 0.07 1.78 7.80 -52.49 -0.41 1.37 16 21 C 0.04 1.01 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.30 13.67 55.49 0.76 -26.54 16 23 Si 1.08 24.65 29.92 -169.99 -5.09 19.57 16 24 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.05 0.39 4.93 -3.83 -0.02 0.37 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.43 7.72 -51.93 -0.40 0.03 16 31 H 0.22 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.10 0.41 7.60 -51.93 -0.39 0.02 16 33 H 0.08 0.46 8.12 -51.93 -0.42 0.03 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.84 6.45 -51.93 -0.34 0.50 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.40 3.55 8.60 -40.82 -0.35 3.20 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.28 8.77 7.13 -40.82 -0.29 8.48 16 44 H 0.08 0.53 8.01 -51.93 -0.42 0.12 16 45 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -37.21 384.67 -10.57 -47.79 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.86 Total: 1.53 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.78 Total: -5.58 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.63 Total: -52.88 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.57 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.11 Total: -5.16 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.21 -10.57 -47.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267909849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.297 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds