Wall clock time and date at job start Sat Apr 11 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40447 * 126.82130 * 2 1 4 4 C 1.30709 * 106.79166 * 180.02562 * 3 2 1 5 5 N 1.33249 * 108.94587 * 359.76298 * 4 3 2 6 6 C 1.30828 * 109.82901 * 0.40525 * 5 4 3 7 7 C 1.50699 * 125.96221 * 179.87099 * 6 5 4 8 8 N 1.46902 * 109.46811 * 269.68214 * 7 6 5 9 9 C 1.46849 * 110.99983 * 66.04321 * 8 7 6 10 10 C 1.53038 * 109.52243 * 185.83707 * 9 8 7 11 11 C 1.53119 * 109.28082 * 300.82303 * 10 9 8 12 12 C 1.53118 * 109.15841 * 57.65504 * 11 10 9 13 13 H 1.08996 * 109.50190 * 62.32806 * 12 11 10 14 14 N 1.46504 * 109.49993 * 182.40666 * 12 11 10 15 15 C 1.34779 * 119.99957 * 274.99601 * 14 12 11 16 16 O 1.21281 * 119.99517 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00222 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47406 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47035 * 60.00421 * 23 21 19 25 25 H 1.48503 * 109.46845 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47237 * 300.00177 * 23 21 19 27 27 C 1.46846 * 111.00012 * 190.25625 * 8 7 6 28 28 H 1.08999 * 109.47447 * 269.95828 * 1 2 3 29 29 H 1.08995 * 109.46838 * 29.96126 * 1 2 3 30 30 H 1.09001 * 109.46760 * 149.95904 * 1 2 3 31 31 H 1.08002 * 125.52939 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47383 * 149.68091 * 7 6 5 33 33 H 1.08994 * 109.47364 * 29.68094 * 7 6 5 34 34 H 1.09004 * 109.46207 * 65.82297 * 9 8 7 35 35 H 1.08997 * 109.46464 * 305.85601 * 9 8 7 36 36 H 1.09002 * 109.50082 * 180.88070 * 10 9 8 37 37 H 1.09002 * 109.50142 * 60.76753 * 10 9 8 38 38 H 1.09009 * 109.52190 * 297.74948 * 11 10 9 39 39 H 1.08994 * 109.51998 * 177.56127 * 11 10 9 40 40 H 0.96999 * 120.00526 * 94.99866 * 14 12 11 41 41 H 1.09005 * 109.46836 * 60.00415 * 17 15 14 42 42 H 1.08996 * 109.47837 * 300.00838 * 17 15 14 43 43 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 44 44 H 1.08994 * 109.46533 * 54.14349 * 27 8 7 45 45 H 1.09004 * 109.46340 * 294.17384 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 7 3.5096 -0.6556 0.0043 6 6 2.2707 -1.0761 -0.0007 7 6 1.8247 -2.5156 -0.0004 8 7 1.6788 -2.9832 -1.3853 9 6 2.9785 -3.0202 -2.0680 10 6 2.7714 -3.3701 -3.5433 11 6 2.0801 -4.7324 -3.6477 12 6 0.7517 -4.6812 -2.8878 13 1 0.0972 -3.9414 -3.3486 14 7 0.1108 -5.9978 -2.9343 15 6 -0.6550 -6.3377 -3.9900 16 8 -0.8131 -5.5537 -4.9017 17 6 -1.3138 -7.6921 -4.0381 18 16 -2.2659 -7.8460 -5.5698 19 6 -2.9094 -9.4738 -5.3679 20 1 -2.6676 -10.0442 -4.4832 21 6 -3.7279 -10.0227 -6.3453 22 7 -4.0189 -9.3292 -7.4256 23 14 -4.4095 -11.7487 -6.1315 24 1 -5.2353 -11.8056 -4.8986 25 1 -5.2490 -12.0982 -7.3056 26 1 -3.2866 -12.7141 -6.0202 27 6 1.0172 -4.2934 -1.4314 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 4.4255 1.2874 -0.0003 32 1 0.8674 -2.5993 0.5142 33 1 2.5676 -3.1261 0.5128 34 1 3.6124 -3.7742 -1.6014 35 1 3.4576 -2.0443 -1.9899 36 1 3.7375 -3.4128 -4.0462 37 1 2.1489 -2.6091 -4.0139 38 1 2.7198 -5.4999 -3.2118 39 1 1.8916 -4.9658 -4.6955 40 1 0.2375 -6.6250 -2.2052 41 1 -1.9806 -7.8023 -3.1828 42 1 -0.5501 -8.4691 -4.0058 43 1 -3.6647 -8.4331 -7.5367 44 1 0.0720 -4.2422 -0.8911 45 1 1.6604 -5.0415 -0.9679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267909849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:31 Heat of formation + Delta-G solvation = 26.614402 kcal Electronic energy + Delta-G solvation = -26521.171174 eV Core-core repulsion = 22700.461098 eV Total energy + Delta-G solvation = -3820.710076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.12138 -41.12192 -39.61937 -36.19779 -35.03057 -34.73375 -34.19216 -32.32325 -31.78295 -29.63349 -28.63203 -27.52391 -27.05570 -24.34671 -24.02377 -22.97329 -21.81486 -21.26986 -20.96594 -20.35650 -18.17865 -17.95093 -17.70430 -17.26870 -16.52105 -16.50407 -16.10760 -16.03277 -15.75057 -15.65472 -15.48245 -15.00495 -14.88100 -14.72722 -14.46581 -14.22816 -14.02178 -13.92124 -13.90404 -13.62671 -13.55567 -12.91768 -12.72253 -12.63376 -12.42886 -11.96078 -11.93929 -11.89373 -11.64784 -11.52103 -11.08244 -11.07442 -10.99551 -10.75196 -10.58688 -10.30398 -10.14510 -9.48592 -8.90887 -8.85172 -6.25950 0.54475 1.21292 1.40824 1.53362 1.54670 1.61802 1.81482 1.83551 2.14747 2.36151 2.87581 3.03759 3.15361 3.18250 3.57316 3.64138 3.76597 3.82459 3.89821 3.98967 4.15743 4.20665 4.26273 4.30843 4.37893 4.40289 4.41609 4.53168 4.55525 4.58750 4.68137 4.69986 4.83653 4.91971 5.02336 5.19282 5.25410 5.28506 5.41384 5.45682 5.65878 5.77341 5.84805 5.95390 6.16137 6.47065 7.07787 7.08020 7.20597 8.52497 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.001869 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.998973 B =14974.423820 C =15221.813498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.372 5.372 3 N -0.353 5.353 4 C 0.192 3.808 5 N -0.564 5.564 6 C 0.283 3.717 7 C 0.136 3.864 8 N -0.541 5.541 9 C 0.062 3.938 10 C -0.107 4.107 11 C -0.129 4.129 12 C 0.153 3.847 13 H 0.066 0.934 14 N -0.705 5.705 15 C 0.537 3.463 16 O -0.564 6.564 17 C -0.109 4.109 18 S -0.199 6.199 19 C -0.612 4.612 20 H 0.076 0.924 21 C -0.021 4.021 22 N -0.914 5.914 23 Si 1.136 2.864 24 H -0.262 1.262 25 H -0.282 1.282 26 H -0.263 1.263 27 C 0.063 3.937 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.241 0.759 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.418 0.582 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.260 0.740 44 H 0.104 0.896 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.864 13.910 22.694 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.162 5.162 3 N -0.182 5.182 4 C -0.111 4.111 5 N -0.294 5.294 6 C 0.006 3.994 7 C 0.006 3.994 8 N -0.268 5.268 9 C -0.066 4.066 10 C -0.146 4.146 11 C -0.167 4.167 12 C 0.048 3.952 13 H 0.085 0.915 14 N -0.359 5.359 15 C 0.322 3.678 16 O -0.442 6.442 17 C -0.260 4.260 18 S 0.028 5.972 19 C -0.760 4.760 20 H 0.095 0.905 21 C -0.224 4.224 22 N -0.549 5.549 23 Si 0.954 3.046 24 H -0.187 1.187 25 H -0.207 1.207 26 H -0.188 1.188 27 C -0.065 4.065 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.257 0.743 32 H 0.145 0.855 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.256 0.744 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.363 15.005 20.261 28.535 hybrid contribution 1.497 -0.233 1.779 2.336 sum 14.860 14.772 22.040 30.410 Atomic orbital electron populations 1.22289 0.71761 1.06165 1.05215 1.50426 1.09174 1.03438 1.53171 1.78006 1.02913 1.09683 1.27621 1.26504 0.96399 0.90579 0.97597 1.70475 1.20574 1.12075 1.26238 1.24457 0.86029 0.93160 0.95749 1.20624 1.03913 0.84579 0.90284 1.61648 1.23072 1.27640 1.14394 1.22098 0.89223 1.01700 0.93550 1.21474 1.00799 0.95947 0.96378 1.21946 0.96381 0.98440 0.99966 1.20841 0.93519 0.83905 0.96983 0.91540 1.45645 1.49826 1.18150 1.22236 1.19973 0.78124 0.87592 0.82109 1.90707 1.62268 1.52914 1.38289 1.23226 1.02737 0.97944 1.02126 1.85105 1.62621 1.22637 1.26832 1.24034 1.38879 1.00901 1.12186 0.90543 1.27832 0.94105 1.09298 0.91132 1.70918 1.43530 1.12433 1.28047 0.82722 0.76607 0.68390 0.76900 1.18670 1.20719 1.18807 1.22197 1.00844 0.89300 0.94150 0.88217 0.89055 0.87053 0.74305 0.85508 0.89469 0.92954 0.90976 0.90220 0.92870 0.90271 0.94198 0.74443 0.86741 0.87050 0.92893 0.87755 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.16 127.77 1.43 2.19 16 2 N -0.37 -6.09 4.04 -359.87 -1.45 -7.55 16 3 N -0.35 -7.19 12.70 -61.24 -0.78 -7.97 16 4 C 0.19 3.41 13.03 180.76 2.36 5.76 16 5 N -0.56 -10.71 10.31 -191.78 -1.98 -12.68 16 6 C 0.28 4.48 6.61 138.23 0.91 5.39 16 7 C 0.14 1.29 5.09 85.56 0.44 1.72 16 8 N -0.54 -6.88 4.65 -900.92 -4.19 -11.06 16 9 C 0.06 0.94 5.31 86.33 0.46 1.39 16 10 C -0.11 -1.96 6.09 30.65 0.19 -1.77 16 11 C -0.13 -2.64 5.58 30.67 0.17 -2.47 16 12 C 0.15 3.02 2.62 45.04 0.12 3.14 16 13 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 14 N -0.70 -15.19 5.08 -442.29 -2.25 -17.44 16 15 C 0.54 18.36 7.81 87.65 0.68 19.05 16 16 O -0.56 -25.06 15.53 -3.03 -0.05 -25.11 16 17 C -0.11 -4.07 6.16 71.23 0.44 -3.63 16 18 S -0.20 -10.73 19.60 -56.49 -1.11 -11.84 16 19 C -0.61 -34.71 9.50 67.96 0.65 -34.06 16 20 H 0.08 4.03 7.80 -2.91 -0.02 4.00 16 21 C -0.02 -1.19 5.49 84.86 0.47 -0.72 16 22 N -0.91 -57.80 13.67 21.65 0.30 -57.50 16 23 Si 1.14 48.53 29.92 68.60 2.05 50.59 16 24 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 27 C 0.06 0.69 4.93 86.33 0.43 1.12 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.71 7.72 -2.39 -0.02 0.69 16 31 H 0.24 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.13 0.50 7.60 -2.39 -0.02 0.48 16 33 H 0.09 0.69 8.12 -2.39 -0.02 0.67 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 1.33 6.45 -2.39 -0.02 1.31 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.42 5.72 8.60 -92.71 -0.80 4.93 16 41 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 43 H 0.26 17.13 7.13 -92.71 -0.66 16.47 16 44 H 0.10 0.82 8.01 -2.39 -0.02 0.80 16 45 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -85.07 384.67 -0.41 -85.47 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.31 Total: 17.97 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 8.72 Total: -2.88 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -10.35 Total: -114.20 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.05 Total: 50.59 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.11 Total: -11.84 kcal Total: -85.07 -0.41 -85.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267909849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.089 kcal (2) G-P(sol) polarization free energy of solvation -85.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds