Wall clock time and date at job start Sat Apr 11 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00316 * 2 1 4 4 O 1.21577 * 120.00095 * 185.40473 * 3 2 1 5 5 C 1.47620 * 119.99569 * 5.39636 * 3 2 1 6 6 N 1.31861 * 126.46071 * 5.92113 * 5 3 2 7 7 N 1.28468 * 110.15582 * 179.97438 * 6 5 3 8 8 H 0.97008 * 124.93397 * 179.97438 * 7 6 5 9 9 C 1.35726 * 110.13078 * 359.97438 * 7 6 5 10 10 C 1.35541 * 107.11817 * 359.72923 * 9 7 6 11 11 F 1.35095 * 127.24368 * 180.29596 * 10 9 7 12 12 C 1.46499 * 119.99808 * 179.97438 * 2 1 3 13 13 H 1.09003 * 110.28809 * 179.30397 * 12 2 1 14 14 C 1.54255 * 110.32500 * 57.17389 * 12 2 1 15 15 C 1.54386 * 105.06283 * 241.10352 * 14 12 2 16 16 N 1.48560 * 104.59059 * 23.85244 * 15 14 12 17 17 C 1.46899 * 110.99827 * 200.95919 * 16 15 14 18 18 C 1.50698 * 109.47415 * 290.12662 * 17 16 15 19 19 O 1.21296 * 119.99874 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00403 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99887 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00022 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99589 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00111 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00279 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47314 * 89.99577 * 25 23 21 27 27 H 1.48504 * 109.47274 * 210.00051 * 25 23 21 28 28 H 1.48504 * 109.47184 * 330.00039 * 25 23 21 29 29 C 1.48823 * 104.24043 * 320.49036 * 16 15 14 30 30 H 1.08999 * 109.47243 * 275.38287 * 1 2 3 31 31 H 1.08998 * 109.47243 * 155.37545 * 1 2 3 32 32 H 1.08999 * 109.46938 * 35.38189 * 1 2 3 33 33 H 1.08011 * 126.43986 * 179.97438 * 9 7 6 34 34 H 1.08997 * 110.32717 * 359.97438 * 14 12 2 35 35 H 1.09003 * 110.32569 * 122.20749 * 14 12 2 36 36 H 1.08996 * 110.41130 * 142.62849 * 15 14 12 37 37 H 1.09002 * 110.40975 * 265.07495 * 15 14 12 38 38 H 1.08997 * 109.47121 * 50.12951 * 17 16 15 39 39 H 1.09007 * 109.47232 * 170.12621 * 17 16 15 40 40 H 0.96996 * 119.99407 * 0.02562 * 20 18 17 41 41 H 0.97002 * 120.00607 * 179.97438 * 24 23 21 42 42 H 1.08996 * 110.45223 * 280.77728 * 29 16 15 43 43 H 1.09003 * 110.49814 * 158.24956 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3507 1.1695 -0.0992 5 6 1.4057 2.4428 0.1202 6 7 0.1139 2.5861 0.3426 7 7 -0.1914 3.8331 0.3896 8 1 -1.0841 4.1810 0.5418 9 6 0.9163 4.5929 0.1955 10 6 1.9584 3.7430 0.0261 11 9 3.2517 4.0680 -0.1902 12 6 2.1974 -1.2687 0.0006 13 1 3.2718 -1.0849 -0.0119 14 6 1.7862 -2.1254 -1.2146 15 6 1.1846 -3.4133 -0.6124 16 7 0.7378 -3.0172 0.7480 17 6 0.6041 -4.1912 1.6208 18 6 -0.5733 -5.0185 1.1732 19 8 -1.2356 -4.6651 0.2204 20 7 -0.8898 -6.1515 1.8308 21 6 -1.9606 -6.9044 1.4232 22 1 -2.5503 -6.5898 0.5748 23 6 -2.2872 -8.0722 2.1015 24 7 -3.3139 -8.7936 1.7112 25 14 -1.2678 -8.6161 3.5694 26 1 -1.8354 -8.0308 4.8105 27 1 -1.2898 -10.0978 3.6657 28 1 0.1325 -8.1519 3.3988 29 6 1.8118 -2.1100 1.2363 30 1 -0.3634 0.0964 1.0231 31 1 -0.3633 -0.9342 -0.4282 32 1 -0.3633 0.8379 -0.5950 33 1 0.9599 5.6721 0.1828 34 1 1.0391 -1.6021 -1.8113 35 1 2.6590 -2.3635 -1.8227 36 1 0.3365 -3.7512 -1.2077 37 1 1.9425 -4.1944 -0.5512 38 1 1.5122 -4.7912 1.5644 39 1 0.4482 -3.8638 2.6488 40 1 -0.3600 -6.4342 2.5925 41 1 -3.5417 -9.6091 2.1845 42 1 2.6680 -2.6869 1.5857 43 1 1.4356 -1.4667 2.0318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269274443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:44 Heat of formation + Delta-G solvation = -29.170479 kcal Electronic energy + Delta-G solvation = -29309.673194 eV Core-core repulsion = 24920.330928 eV Total energy + Delta-G solvation = -4389.342266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.70425 -43.72835 -41.29245 -40.32139 -39.01980 -36.32814 -35.82125 -33.75294 -33.29370 -32.19758 -31.54567 -29.72513 -28.53491 -27.61173 -26.01484 -25.02584 -23.01743 -22.41532 -21.83780 -21.19736 -20.40765 -20.14149 -19.52072 -18.32950 -17.73008 -17.54788 -17.45757 -16.96995 -16.87590 -16.45413 -16.31808 -16.04289 -16.00211 -15.67992 -15.42505 -15.10108 -14.86579 -14.56680 -14.40247 -14.04381 -13.86130 -13.80773 -13.19502 -13.09591 -13.03604 -12.95376 -12.83113 -12.65967 -12.39644 -12.13896 -11.96731 -11.93532 -11.80562 -11.46068 -11.24239 -10.64724 -10.39179 -10.21329 -10.05644 -9.69194 -9.36498 -8.39117 -5.99245 0.28663 0.81252 1.31108 1.36460 1.44932 1.65377 1.96989 1.99844 2.09400 2.24220 2.65794 2.97524 3.16640 3.27810 3.52374 3.56835 3.69236 3.81929 3.89847 4.10937 4.17410 4.30428 4.35835 4.39400 4.42295 4.48179 4.51877 4.67122 4.76255 4.79757 4.91697 5.05816 5.10827 5.15982 5.23249 5.49610 5.54779 5.85888 5.88203 5.95136 6.02069 6.27469 6.58413 6.62458 6.91609 6.98185 7.43254 8.00745 8.78523 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024814 B = 0.002202 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.131576 B =12713.396498 C =13111.541621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.584 5.584 3 C 0.593 3.407 4 O -0.569 6.569 5 C -0.057 4.057 6 N -0.231 5.231 7 N -0.347 5.347 8 H 0.477 0.523 9 C 0.007 3.993 10 C -0.009 4.009 11 F -0.120 7.120 12 C 0.139 3.861 13 H 0.108 0.892 14 C -0.123 4.123 15 C 0.039 3.961 16 N -0.501 5.501 17 C 0.042 3.958 18 C 0.455 3.545 19 O -0.603 6.603 20 N -0.595 5.595 21 C -0.323 4.323 22 H 0.056 0.944 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.963 3.037 26 H -0.258 1.258 27 H -0.277 1.277 28 H -0.232 1.232 29 C 0.029 3.971 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.388 0.612 41 H 0.278 0.722 42 H 0.077 0.923 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 27.105 1.757 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.314 5.314 3 C 0.381 3.619 4 O -0.447 6.447 5 C -0.217 4.217 6 N -0.069 5.069 7 N -0.067 5.067 8 H 0.328 0.672 9 C -0.139 4.139 10 C -0.038 4.038 11 F -0.098 7.098 12 C 0.035 3.965 13 H 0.126 0.874 14 C -0.162 4.162 15 C -0.089 4.089 16 N -0.225 5.225 17 C -0.089 4.089 18 C 0.243 3.757 19 O -0.487 6.487 20 N -0.237 5.237 21 C -0.452 4.452 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.202 1.202 28 H -0.155 1.155 29 C -0.099 4.099 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.263 0.737 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.224 0.776 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.045 26.790 1.240 28.638 hybrid contribution 1.134 -0.749 0.479 1.441 sum 11.179 26.041 1.719 28.391 Atomic orbital electron populations 1.21879 0.76979 1.03109 1.02717 1.47759 1.08343 1.04528 1.70797 1.17170 0.85824 0.82605 0.76328 1.90784 1.14378 1.87078 1.52447 1.21940 0.91474 0.94394 1.13864 1.73905 1.13622 1.01953 1.17453 1.43391 1.12014 1.02170 1.49082 0.67187 1.23309 0.84359 1.00726 1.05483 1.17617 0.81076 0.92115 1.13032 1.91479 1.32772 1.92456 1.93136 1.21878 0.97283 0.82262 0.95041 0.87442 1.22663 1.01540 0.94801 0.97183 1.23073 0.98542 0.96580 0.90754 1.65177 1.41565 1.13869 1.01933 1.22021 0.95620 0.92005 0.99260 1.20796 0.88079 0.82119 0.84728 1.90532 1.55496 1.71734 1.30891 1.42049 1.28562 1.22461 1.30650 1.18980 1.06723 1.04739 1.14790 0.92566 1.26087 0.97997 0.95519 1.01898 1.69801 1.28838 1.16267 1.42789 0.85383 0.79811 0.78547 0.77889 1.18240 1.20205 1.15531 1.23553 0.93862 0.95335 0.97179 0.92097 0.90910 0.89827 0.73724 0.90816 0.88865 0.91717 0.93158 0.90052 0.86293 0.77628 0.91252 0.90541 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.19 8.30 127.77 1.06 3.25 16 2 N -0.58 -14.34 2.74 -821.24 -2.25 -16.60 16 3 C 0.59 16.36 7.67 86.72 0.67 17.02 16 4 O -0.57 -19.15 16.05 -3.96 -0.06 -19.21 16 5 C -0.06 -1.28 6.75 42.45 0.29 -0.99 16 6 N -0.23 -3.79 8.99 -48.15 -0.43 -4.22 16 7 N -0.35 -2.45 6.86 -56.99 -0.39 -2.85 16 8 H 0.48 -0.90 8.96 -219.98 -1.97 -2.88 16 9 C 0.01 0.05 12.06 83.47 1.01 1.06 16 10 C -0.01 -0.17 8.03 22.47 0.18 0.02 16 11 F -0.12 -2.90 17.05 44.97 0.77 -2.13 16 12 C 0.14 3.28 3.45 45.89 0.16 3.44 16 13 H 0.11 2.60 6.97 -2.39 -0.02 2.59 16 14 C -0.12 -2.93 6.12 31.49 0.19 -2.74 16 15 C 0.04 1.12 5.80 86.45 0.50 1.62 16 16 N -0.50 -14.54 4.46 -885.29 -3.95 -18.49 16 17 C 0.04 1.27 5.30 85.56 0.45 1.73 16 18 C 0.46 20.12 7.59 87.66 0.66 20.78 16 19 O -0.60 -32.47 14.42 -3.08 -0.04 -32.51 16 20 N -0.59 -27.74 5.09 -306.98 -1.56 -29.30 16 21 C -0.32 -18.78 10.16 84.04 0.85 -17.92 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 24 N -0.94 -56.40 13.96 21.66 0.30 -56.10 16 25 Si 0.96 38.75 27.74 68.60 1.90 40.65 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 27 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 29 C 0.03 0.65 5.73 86.40 0.49 1.15 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.94 6.36 -2.39 -0.02 1.93 16 32 H 0.08 1.74 5.95 -2.39 -0.01 1.73 16 33 H 0.25 -0.68 8.06 -2.91 -0.02 -0.70 16 34 H 0.07 1.86 6.97 -2.39 -0.02 1.84 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.39 6.91 -2.39 -0.02 2.38 16 37 H 0.05 1.35 7.82 -2.39 -0.02 1.33 16 38 H 0.08 2.03 7.88 -2.39 -0.02 2.01 16 39 H 0.12 2.96 8.13 -2.38 -0.02 2.94 16 40 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16 41 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.08 1.43 8.00 -2.39 -0.02 1.41 16 43 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 Total: -1.00 -86.64 358.35 -0.21 -86.85 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -1.47 Total: 25.96 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 6.99 Total: 27.95 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -8.28 Total: -127.56 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.11 Total: -51.72 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.77 Total: -2.13 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 1.90 Total: 40.65 kcal Total: -86.64 -0.21 -86.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269274443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.679 kcal (2) G-P(sol) polarization free energy of solvation -86.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds