Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00025 * 2 1 4 4 O 1.21575 * 120.00158 * 185.38857 * 3 2 1 5 5 C 1.47620 * 119.99642 * 5.38537 * 3 2 1 6 6 N 1.31868 * 126.46291 * 3.73897 * 5 3 2 7 7 N 1.28470 * 110.15316 * 179.82210 * 6 5 3 8 8 H 0.97003 * 124.92842 * 180.16292 * 7 6 5 9 9 C 1.35725 * 110.13490 * 0.45192 * 7 6 5 10 10 C 1.35543 * 107.11698 * 359.72611 * 9 7 6 11 11 F 1.35099 * 127.24140 * 179.97438 * 10 9 7 12 12 C 1.46502 * 120.00257 * 180.02562 * 2 1 3 13 13 H 1.08996 * 110.28817 * 179.32674 * 12 2 1 14 14 C 1.54259 * 110.31786 * 301.45148 * 12 2 1 15 15 C 1.54385 * 105.06138 * 118.89755 * 14 12 2 16 16 N 1.48560 * 104.59373 * 23.84819 * 15 14 12 17 17 C 1.46904 * 111.00257 * 200.96337 * 16 15 14 18 18 C 1.50696 * 109.47123 * 178.79673 * 17 16 15 19 19 O 1.21291 * 120.00208 * 358.70435 * 18 17 16 20 20 N 1.34781 * 119.99800 * 178.70739 * 18 17 16 21 21 C 1.37092 * 119.99990 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00196 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00078 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99791 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47401 * 59.99890 * 25 23 21 27 27 H 1.48504 * 109.47135 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47432 * 299.99762 * 25 23 21 29 29 C 1.48561 * 104.22361 * 320.51927 * 16 15 14 30 30 H 1.09001 * 109.46762 * 275.78621 * 1 2 3 31 31 H 1.08998 * 109.47411 * 155.78355 * 1 2 3 32 32 H 1.09001 * 109.47753 * 35.78255 * 1 2 3 33 33 H 1.07992 * 126.44091 * 179.73466 * 9 7 6 34 34 H 1.09002 * 110.32526 * 237.78602 * 14 12 2 35 35 H 1.08998 * 110.33107 * 0.02562 * 14 12 2 36 36 H 1.08997 * 110.41436 * 142.62890 * 15 14 12 37 37 H 1.09002 * 110.40830 * 264.95398 * 15 14 12 38 38 H 1.08993 * 109.46748 * 298.79749 * 17 16 15 39 39 H 1.08998 * 109.46952 * 58.79349 * 17 16 15 40 40 H 0.96995 * 119.99718 * 359.97438 * 20 18 17 41 41 H 0.97008 * 119.99879 * 179.97438 * 24 23 21 42 42 H 1.09000 * 110.41072 * 280.70557 * 29 16 15 43 43 H 1.08997 * 110.41524 * 158.26333 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1696 -0.0989 5 6 1.4056 2.4428 0.1200 6 7 0.1075 2.5864 0.3022 7 7 -0.1953 3.8333 0.3658 8 1 -1.0911 4.1812 0.4982 9 6 0.9192 4.5930 0.2146 10 6 1.9628 3.7430 0.0550 11 9 3.2613 4.0679 -0.1281 12 6 2.1976 -1.2687 -0.0006 13 1 3.2718 -1.0848 -0.0125 14 6 1.8117 -2.1106 1.2331 15 6 1.1980 -3.4057 0.6591 16 7 1.7751 -3.5207 -0.7050 17 6 0.9481 -4.3875 -1.5552 18 6 1.5476 -4.4563 -2.9361 19 8 2.5506 -3.8249 -3.1940 20 7 0.9691 -5.2194 -3.8846 21 6 1.5140 -5.2815 -5.1410 22 1 2.4067 -4.7187 -5.3709 23 6 0.9180 -6.0686 -6.1187 24 7 -0.1679 -6.7538 -5.8388 25 14 1.6609 -6.1539 -7.8304 26 1 3.0472 -6.6793 -7.7428 27 1 0.8424 -7.0549 -8.6810 28 1 1.6836 -4.7949 -8.4285 29 6 1.7844 -2.1259 -1.2163 30 1 -0.3633 0.1036 1.0225 31 1 -0.3634 -0.9372 -0.4215 32 1 -0.3634 0.8337 -0.6009 33 1 0.9657 5.6719 0.2205 34 1 2.6969 -2.3416 1.8258 35 1 1.0770 -1.5801 1.8389 36 1 1.4845 -4.2640 1.2667 37 1 0.1124 -3.3220 0.6087 38 1 0.9100 -5.3884 -1.1254 39 1 -0.0609 -3.9800 -1.6169 40 1 0.1672 -5.7245 -3.6782 41 1 -0.5842 -7.3030 -6.5215 42 1 0.7907 -1.8412 -1.5621 43 1 2.5124 -2.0206 -2.0206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269274444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = -4.718073 kcal Electronic energy + Delta-G solvation = -29356.102400 eV Core-core repulsion = 24967.820470 eV Total energy + Delta-G solvation = -4388.281931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.90366 -43.10805 -40.17879 -38.73153 -37.46186 -35.21450 -33.87469 -32.46664 -31.37416 -31.08586 -30.76662 -28.52778 -27.12757 -26.55632 -24.63117 -23.93826 -22.36822 -21.13975 -20.91418 -19.57439 -19.13677 -18.78617 -17.84833 -17.41519 -16.80863 -16.47365 -16.24587 -15.96538 -15.49098 -15.31723 -15.18468 -14.83929 -14.65650 -14.42928 -14.07168 -13.82526 -13.68906 -13.28158 -13.04094 -13.01307 -12.51724 -12.36409 -12.12038 -11.90168 -11.55534 -11.46500 -11.32098 -11.18322 -11.14302 -10.89544 -10.61457 -10.41568 -10.18985 -10.15568 -10.00158 -9.46140 -9.38024 -8.70847 -8.46150 -8.01153 -7.91358 -6.39602 -3.80138 1.04188 1.41730 2.17733 2.73764 3.07537 3.22258 3.27502 3.32477 3.70879 3.92389 4.09712 4.14916 4.33276 4.38080 4.51313 4.72597 4.78919 4.86705 5.05419 5.13104 5.16075 5.27930 5.40246 5.45037 5.48109 5.64383 5.73777 5.80590 5.88611 5.90851 5.93657 6.07909 6.12795 6.28568 6.28816 6.45641 6.57887 7.09989 7.16149 7.22633 7.26496 7.57484 8.00578 8.08335 8.64152 9.20494 9.56433 10.08592 10.78167 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.002431 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.278594 B =11513.687414 C =12263.979074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.598 3.402 4 O -0.519 6.519 5 C -0.024 4.024 6 N -0.229 5.229 7 N -0.373 5.373 8 H 0.456 0.544 9 C -0.037 4.037 10 C 0.039 3.961 11 F -0.099 7.099 12 C 0.134 3.866 13 H 0.114 0.886 14 C -0.131 4.131 15 C 0.029 3.971 16 N -0.484 5.484 17 C 0.036 3.964 18 C 0.443 3.557 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.030 3.970 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.198 0.802 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.044 0.956 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 19.642 16.998 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.325 5.325 3 C 0.384 3.616 4 O -0.393 6.393 5 C -0.185 4.185 6 N -0.066 5.066 7 N -0.089 5.089 8 H 0.302 0.698 9 C -0.182 4.182 10 C 0.009 3.991 11 F -0.077 7.077 12 C 0.031 3.969 13 H 0.132 0.868 14 C -0.170 4.170 15 C -0.099 4.099 16 N -0.208 5.208 17 C -0.096 4.096 18 C 0.228 3.772 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.098 4.098 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.215 0.785 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.055 19.056 16.749 26.084 hybrid contribution -0.848 0.626 -0.858 1.360 sum -6.904 19.683 15.891 26.222 Atomic orbital electron populations 1.21948 0.78810 1.03310 1.02273 1.47716 1.07449 1.05253 1.72116 1.16790 0.86158 0.81532 0.77146 1.90859 1.12745 1.86183 1.49489 1.22193 0.90170 0.94866 1.11315 1.73898 1.14847 1.00179 1.17678 1.43157 1.10462 1.03221 1.52040 0.69775 1.22684 0.86081 0.99322 1.10151 1.17184 0.80620 0.91476 1.09834 1.91557 1.30732 1.92359 1.93066 1.22023 0.98412 0.81444 0.95035 0.86796 1.22665 1.01629 0.95419 0.97290 1.23174 0.96934 0.98060 0.91730 1.65172 1.46696 1.08095 1.00804 1.22070 0.94606 0.98728 0.94190 1.19705 0.87047 0.84650 0.85755 1.90503 1.26641 1.47513 1.81416 1.41840 1.26576 1.41483 1.10196 1.19655 1.10624 1.26325 0.86139 0.87959 1.25249 0.96122 0.96329 1.00238 1.69606 1.19654 1.29812 1.35404 0.85925 0.78845 0.78226 0.81278 1.19851 1.21009 1.19937 1.23561 1.01796 0.87073 0.97382 0.92289 0.91003 0.89815 0.78480 0.90113 0.90849 0.89901 0.94028 0.89040 0.93368 0.77515 0.91866 0.93826 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 8.13 59.85 0.49 1.30 16 2 N -0.59 -7.86 2.79 -173.55 -0.48 -8.34 16 3 C 0.60 8.94 7.67 -12.43 -0.10 8.84 16 4 O -0.52 -9.57 16.05 5.30 0.09 -9.49 16 5 C -0.02 -0.29 6.78 -82.74 -0.56 -0.85 16 6 N -0.23 -2.01 8.94 33.43 0.30 -1.71 16 7 N -0.37 -1.85 6.86 30.63 0.21 -1.64 16 8 H 0.46 0.26 8.96 -190.44 -1.71 -1.45 16 9 C -0.04 -0.22 12.06 -16.79 -0.20 -0.42 16 10 C 0.04 0.42 8.03 -39.26 -0.32 0.10 16 11 F -0.10 -1.29 17.04 2.25 0.04 -1.25 16 12 C 0.13 1.94 3.46 -66.55 -0.23 1.71 16 13 H 0.11 1.88 6.97 -51.93 -0.36 1.52 16 14 C -0.13 -1.54 6.48 -25.35 -0.16 -1.70 16 15 C 0.03 0.37 6.49 -2.18 -0.01 0.35 16 16 N -0.48 -8.19 5.19 -231.41 -1.20 -9.39 16 17 C 0.04 0.64 5.35 -4.98 -0.03 0.62 16 18 C 0.44 10.56 7.55 -10.99 -0.08 10.48 16 19 O -0.58 -15.75 13.85 5.55 0.08 -15.67 16 20 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 21 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 25 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 C 0.03 0.52 5.11 -2.18 -0.01 0.51 16 30 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.07 0.74 6.37 -51.93 -0.33 0.41 16 32 H 0.08 0.83 5.91 -51.93 -0.31 0.53 16 33 H 0.20 0.32 8.06 -52.49 -0.42 -0.11 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.74 7.37 -51.93 -0.38 0.36 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.47 7.96 -51.93 -0.41 0.05 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.05 0.78 7.98 -51.93 -0.41 0.36 16 40 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.04 0.72 6.01 -51.93 -0.31 0.41 16 43 H 0.11 2.37 6.46 -51.93 -0.34 2.04 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -36.20 360.16 -7.87 -44.07 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.51 Total: 7.21 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -1.46 Total: 12.92 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.51 Total: -59.51 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.16 Total: -25.16 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.20 -7.87 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269274444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.354 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds