Wall clock time and date at job start Sat Apr 11 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00025 * 2 1 4 4 O 1.21575 * 120.00158 * 185.38857 * 3 2 1 5 5 C 1.47620 * 119.99642 * 5.38537 * 3 2 1 6 6 N 1.31868 * 126.46291 * 3.73897 * 5 3 2 7 7 N 1.28470 * 110.15316 * 179.82210 * 6 5 3 8 8 H 0.97003 * 124.92842 * 180.16292 * 7 6 5 9 9 C 1.35725 * 110.13490 * 0.45192 * 7 6 5 10 10 C 1.35543 * 107.11698 * 359.72611 * 9 7 6 11 11 F 1.35099 * 127.24140 * 179.97438 * 10 9 7 12 12 C 1.46502 * 120.00257 * 180.02562 * 2 1 3 13 13 H 1.08996 * 110.28817 * 179.32674 * 12 2 1 14 14 C 1.54259 * 110.31786 * 301.45148 * 12 2 1 15 15 C 1.54385 * 105.06138 * 118.89755 * 14 12 2 16 16 N 1.48560 * 104.59373 * 23.84819 * 15 14 12 17 17 C 1.46904 * 111.00257 * 200.96337 * 16 15 14 18 18 C 1.50696 * 109.47123 * 178.79673 * 17 16 15 19 19 O 1.21291 * 120.00208 * 358.70435 * 18 17 16 20 20 N 1.34781 * 119.99800 * 178.70739 * 18 17 16 21 21 C 1.37092 * 119.99990 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00196 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00078 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99791 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47401 * 59.99890 * 25 23 21 27 27 H 1.48504 * 109.47135 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47432 * 299.99762 * 25 23 21 29 29 C 1.48561 * 104.22361 * 320.51927 * 16 15 14 30 30 H 1.09001 * 109.46762 * 275.78621 * 1 2 3 31 31 H 1.08998 * 109.47411 * 155.78355 * 1 2 3 32 32 H 1.09001 * 109.47753 * 35.78255 * 1 2 3 33 33 H 1.07992 * 126.44091 * 179.73466 * 9 7 6 34 34 H 1.09002 * 110.32526 * 237.78602 * 14 12 2 35 35 H 1.08998 * 110.33107 * 0.02562 * 14 12 2 36 36 H 1.08997 * 110.41436 * 142.62890 * 15 14 12 37 37 H 1.09002 * 110.40830 * 264.95398 * 15 14 12 38 38 H 1.08993 * 109.46748 * 298.79749 * 17 16 15 39 39 H 1.08998 * 109.46952 * 58.79349 * 17 16 15 40 40 H 0.96995 * 119.99718 * 359.97438 * 20 18 17 41 41 H 0.97008 * 119.99879 * 179.97438 * 24 23 21 42 42 H 1.09000 * 110.41072 * 280.70557 * 29 16 15 43 43 H 1.08997 * 110.41524 * 158.26333 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1696 -0.0989 5 6 1.4056 2.4428 0.1200 6 7 0.1075 2.5864 0.3022 7 7 -0.1953 3.8333 0.3658 8 1 -1.0911 4.1812 0.4982 9 6 0.9192 4.5930 0.2146 10 6 1.9628 3.7430 0.0550 11 9 3.2613 4.0679 -0.1281 12 6 2.1976 -1.2687 -0.0006 13 1 3.2718 -1.0848 -0.0125 14 6 1.8117 -2.1106 1.2331 15 6 1.1980 -3.4057 0.6591 16 7 1.7751 -3.5207 -0.7050 17 6 0.9481 -4.3875 -1.5552 18 6 1.5476 -4.4563 -2.9361 19 8 2.5506 -3.8249 -3.1940 20 7 0.9691 -5.2194 -3.8846 21 6 1.5140 -5.2815 -5.1410 22 1 2.4067 -4.7187 -5.3709 23 6 0.9180 -6.0686 -6.1187 24 7 -0.1679 -6.7538 -5.8388 25 14 1.6609 -6.1539 -7.8304 26 1 3.0472 -6.6793 -7.7428 27 1 0.8424 -7.0549 -8.6810 28 1 1.6836 -4.7949 -8.4285 29 6 1.7844 -2.1259 -1.2163 30 1 -0.3633 0.1036 1.0225 31 1 -0.3634 -0.9372 -0.4215 32 1 -0.3634 0.8337 -0.6009 33 1 0.9657 5.6719 0.2205 34 1 2.6969 -2.3416 1.8258 35 1 1.0770 -1.5801 1.8389 36 1 1.4845 -4.2640 1.2667 37 1 0.1124 -3.3220 0.6087 38 1 0.9100 -5.3884 -1.1254 39 1 -0.0609 -3.9800 -1.6169 40 1 0.1672 -5.7245 -3.6782 41 1 -0.5842 -7.3030 -6.5215 42 1 0.7907 -1.8412 -1.5621 43 1 2.5124 -2.0206 -2.0206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269274444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:47 Heat of formation + Delta-G solvation = -34.658823 kcal Electronic energy + Delta-G solvation = -29357.400729 eV Core-core repulsion = 24967.820470 eV Total energy + Delta-G solvation = -4389.580259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.73609 -43.76305 -41.34445 -40.28783 -39.00077 -36.43712 -35.86848 -33.46248 -33.17932 -32.16998 -31.57515 -29.66012 -28.42429 -27.81734 -26.19670 -25.12249 -23.03915 -22.40060 -21.87374 -20.98608 -20.45405 -19.87276 -19.57670 -18.41753 -17.71860 -17.60981 -17.50297 -16.98146 -16.72427 -16.55539 -16.30580 -16.10486 -16.00353 -15.69051 -15.49725 -15.35918 -14.95831 -14.53256 -14.16987 -14.00232 -13.80128 -13.70207 -13.53189 -13.13325 -13.07827 -12.96079 -12.72586 -12.43861 -12.36049 -12.29941 -12.11752 -12.00132 -11.76903 -11.48839 -11.28717 -10.67534 -10.30139 -10.09305 -10.01512 -9.73853 -9.37980 -8.47204 -5.95493 0.23461 0.77871 1.38397 1.40177 1.50957 1.57330 1.90309 2.05038 2.05713 2.28241 2.84995 2.93770 3.19520 3.38022 3.50008 3.53248 3.74048 3.79152 3.85611 4.03277 4.18913 4.28695 4.31375 4.35538 4.42632 4.47235 4.54640 4.63880 4.71624 4.85676 4.95232 5.00565 5.09159 5.13643 5.17401 5.38630 5.40559 5.81835 5.88328 5.93507 6.08859 6.19393 6.54851 6.60814 6.93710 7.12954 7.55975 8.13044 8.70041 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.002431 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.278594 B =11513.687414 C =12263.979074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.590 5.590 3 C 0.589 3.411 4 O -0.573 6.573 5 C -0.057 4.057 6 N -0.224 5.224 7 N -0.343 5.343 8 H 0.479 0.521 9 C 0.010 3.990 10 C -0.012 4.012 11 F -0.122 7.122 12 C 0.138 3.862 13 H 0.081 0.919 14 C -0.118 4.118 15 C 0.034 3.966 16 N -0.508 5.508 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.619 6.619 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.075 0.925 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.268 1.268 28 H -0.273 1.273 29 C 0.039 3.961 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.049 0.951 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 20.677 18.554 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.322 5.322 3 C 0.376 3.624 4 O -0.451 6.451 5 C -0.216 4.216 6 N -0.063 5.063 7 N -0.063 5.063 8 H 0.331 0.669 9 C -0.136 4.136 10 C -0.042 4.042 11 F -0.101 7.101 12 C 0.034 3.966 13 H 0.099 0.901 14 C -0.157 4.157 15 C -0.093 4.093 16 N -0.233 5.233 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.505 6.505 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.093 0.907 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.199 1.199 29 C -0.090 4.090 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.264 0.736 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.316 20.074 18.338 28.740 hybrid contribution 0.064 0.399 -1.308 1.369 sum -9.251 20.473 17.030 28.191 Atomic orbital electron populations 1.22125 0.76593 1.03576 1.03902 1.47798 1.08686 1.04367 1.71305 1.17311 0.85893 0.82906 0.76289 1.90812 1.15088 1.87099 1.52076 1.21817 0.91443 0.93987 1.14351 1.73802 1.13002 1.01962 1.17488 1.43364 1.11598 1.02107 1.49204 0.66938 1.23287 0.84081 1.00700 1.05520 1.17717 0.80917 0.92321 1.13251 1.91481 1.32557 1.92468 1.93622 1.21769 0.97023 0.82239 0.95564 0.90054 1.22620 1.02525 0.94646 0.95890 1.23284 0.98264 0.98904 0.88835 1.65090 1.47979 1.07530 1.02723 1.21953 0.95177 1.00612 0.90471 1.20838 0.86230 0.82759 0.87655 1.90496 1.28595 1.48710 1.82677 1.41895 1.26933 1.42236 1.09972 1.19584 1.10869 1.27714 0.88121 0.90687 1.25987 0.96350 0.95401 1.03347 1.69657 1.20025 1.29690 1.36624 0.85035 0.78173 0.78371 0.77034 1.19889 1.19195 1.19866 1.23267 1.00368 0.88317 0.97051 0.89828 0.90770 0.89482 0.73598 0.89706 0.88267 0.88143 0.91512 0.86566 0.90713 0.76898 0.91250 0.93284 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 8.13 127.77 1.04 2.53 16 2 N -0.59 -15.89 2.79 -821.24 -2.29 -18.19 16 3 C 0.59 18.57 7.67 86.72 0.67 19.23 16 4 O -0.57 -23.18 16.05 -3.95 -0.06 -23.25 16 5 C -0.06 -1.36 6.78 42.45 0.29 -1.07 16 6 N -0.22 -3.43 8.94 -48.15 -0.43 -3.86 16 7 N -0.34 -2.10 6.86 -57.00 -0.39 -2.49 16 8 H 0.48 -1.78 8.96 -219.99 -1.97 -3.76 16 9 C 0.01 0.08 12.06 83.47 1.01 1.09 16 10 C -0.01 -0.26 8.03 22.48 0.18 -0.08 16 11 F -0.12 -3.38 17.04 44.97 0.77 -2.61 16 12 C 0.14 4.15 3.46 45.89 0.16 4.31 16 13 H 0.08 2.97 6.97 -2.39 -0.02 2.95 16 14 C -0.12 -2.57 6.48 31.49 0.20 -2.37 16 15 C 0.03 0.76 6.49 86.45 0.56 1.32 16 16 N -0.51 -16.97 5.19 -886.04 -4.60 -21.57 16 17 C 0.05 1.71 5.35 85.55 0.46 2.17 16 18 C 0.44 21.41 7.55 87.66 0.66 22.07 16 19 O -0.62 -35.68 13.85 -3.07 -0.04 -35.72 16 20 N -0.57 -29.91 5.29 -306.98 -1.62 -31.53 16 21 C -0.33 -19.36 9.68 84.04 0.81 -18.54 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.93 13.05 21.66 0.28 -49.64 16 25 Si 0.99 43.87 29.55 68.60 2.03 45.89 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 C 0.04 1.38 5.11 86.45 0.44 1.82 16 30 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 31 H 0.07 1.36 6.37 -2.39 -0.02 1.34 16 32 H 0.09 1.59 5.91 -2.39 -0.01 1.58 16 33 H 0.25 -0.56 8.06 -2.91 -0.02 -0.58 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.68 7.37 -2.39 -0.02 1.66 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.20 7.96 -2.39 -0.02 1.18 16 38 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.08 2.22 7.98 -2.39 -0.02 2.20 16 40 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 41 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 42 H 0.05 1.64 6.01 -2.39 -0.01 1.63 16 43 H 0.06 2.68 6.46 -2.39 -0.02 2.67 16 Total: -1.00 -86.67 360.16 -1.03 -87.70 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -1.61 Total: 22.92 kcal Atomic # 6 Polarization: 25.41 SS G_CDS: 6.94 Total: 32.35 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -9.05 Total: -127.28 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: -0.11 Total: -58.97 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.77 Total: -2.61 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -86.67 -1.03 -87.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269274444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.041 kcal (2) G-P(sol) polarization free energy of solvation -86.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds