Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48491 * 109.47132 * 270.00246 * 3 2 1 5 5 H 1.48505 * 109.46715 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46845 * 149.99980 * 3 2 1 7 7 C 1.38810 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99620 * 191.00641 * 7 2 1 9 9 N 1.36939 * 120.00257 * 11.01488 * 7 2 1 10 10 C 1.46925 * 120.62922 * 211.66879 * 9 7 2 11 11 C 1.53186 * 108.77555 * 233.62384 * 10 9 7 12 12 C 1.53035 * 109.31561 * 305.36620 * 11 10 9 13 13 C 1.53046 * 109.53681 * 61.36513 * 12 11 10 14 14 C 1.53000 * 109.52469 * 178.67021 * 13 12 11 15 15 O 1.42896 * 109.47453 * 180.60359 * 14 13 12 16 16 N 1.46493 * 109.49773 * 58.58823 * 13 12 11 17 17 C 1.34775 * 120.00172 * 62.99771 * 16 13 12 18 18 O 1.21274 * 120.00043 * 354.87363 * 17 16 13 19 19 C 1.50703 * 119.99810 * 175.15232 * 17 16 13 20 20 C 1.53000 * 109.47068 * 179.71872 * 19 17 16 21 21 H 1.09011 * 110.53673 * 56.39544 * 20 19 17 22 22 C 1.54224 * 110.60825 * 179.41195 * 20 19 17 23 23 C 1.51308 * 103.55565 * 118.51936 * 22 20 19 24 24 O 1.21231 * 125.39419 * 180.02562 * 23 22 20 25 25 N 1.33871 * 109.20904 * 0.02562 * 23 22 20 26 26 C 1.33880 * 114.47258 * 359.97438 * 25 23 22 27 27 O 1.21229 * 125.39176 * 179.97438 * 26 25 23 28 28 C 1.46928 * 120.62993 * 31.68607 * 9 7 2 29 29 H 0.97004 * 120.00349 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.58654 * 353.41447 * 10 9 7 31 31 H 1.09009 * 109.58552 * 113.69287 * 10 9 7 32 32 H 1.08999 * 109.49674 * 65.31950 * 11 10 9 33 33 H 1.09005 * 109.50198 * 185.41330 * 11 10 9 34 34 H 1.09003 * 109.46125 * 301.34739 * 12 11 10 35 35 H 1.09001 * 109.46085 * 181.38394 * 12 11 10 36 36 H 1.08999 * 109.46931 * 300.60872 * 14 13 12 37 37 H 1.09001 * 109.47618 * 60.60081 * 14 13 12 38 38 H 0.96701 * 114.00340 * 179.97438 * 15 14 13 39 39 H 0.97001 * 119.99865 * 242.99096 * 16 13 12 40 40 H 1.08992 * 109.47270 * 299.71962 * 19 17 16 41 41 H 1.09001 * 109.47273 * 59.72275 * 19 17 16 42 42 H 1.09004 * 110.60486 * 237.04347 * 22 20 19 43 43 H 1.09003 * 110.60614 * 359.97438 * 22 20 19 44 44 H 0.97003 * 122.76129 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.58684 * 6.58413 * 28 9 7 46 46 H 1.09000 * 109.58363 * 246.16313 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0753 -1.2107 0.1791 9 7 1.3444 -2.3773 -0.2255 10 6 1.7940 -3.6256 0.4055 11 6 1.9935 -4.6845 -0.6834 12 6 0.7058 -4.8207 -1.4990 13 6 0.3851 -3.4861 -2.1760 14 6 -0.8841 -3.6317 -3.0179 15 8 -1.1746 -2.3890 -3.6606 16 7 1.5022 -3.0949 -3.0392 17 6 1.8404 -3.8634 -4.0934 18 8 1.2821 -4.9247 -4.2741 19 6 2.9168 -3.4067 -5.0442 20 6 3.1092 -4.4575 -6.1396 21 1 2.1680 -4.6493 -6.6550 22 6 4.1965 -4.0090 -7.1371 23 6 5.2555 -5.0827 -7.0137 24 8 6.2971 -5.1161 -7.6330 25 7 4.8600 -5.9900 -6.1122 26 6 3.6678 -5.7376 -5.5577 27 8 3.1221 -6.4261 -4.7224 28 6 0.1673 -2.4137 -1.1040 29 1 -0.4851 0.8401 0.0004 30 1 2.7365 -3.4536 0.9251 31 1 1.0417 -3.9670 1.1167 32 1 2.8095 -4.3821 -1.3397 33 1 2.2339 -5.6416 -0.2205 34 1 -0.1151 -5.0990 -0.8379 35 1 0.8370 -5.5911 -2.2589 36 1 -0.7333 -4.4043 -3.7719 37 1 -1.7176 -3.9110 -2.3734 38 1 -1.9681 -2.4078 -4.2129 39 1 1.9984 -2.2827 -2.8520 40 1 2.6238 -2.4595 -5.4969 41 1 3.8514 -3.2751 -4.4989 42 1 3.7977 -3.9781 -8.1510 43 1 4.6002 -3.0371 -6.8532 44 1 5.3936 -6.7659 -5.8795 45 1 0.0366 -1.4421 -1.5803 46 1 -0.7187 -2.6576 -0.5177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501374021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = -127.016623 kcal Electronic energy + Delta-G solvation = -31754.669779 eV Core-core repulsion = 27452.252140 eV Total energy + Delta-G solvation = -4302.417640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.99167 -39.89115 -38.69134 -37.38056 -35.98820 -35.86736 -33.80134 -33.52519 -32.50218 -30.45743 -29.81180 -28.43172 -25.43578 -25.22541 -25.03226 -22.25209 -22.01360 -21.51942 -20.57918 -19.79564 -18.57085 -18.04828 -17.22416 -16.85724 -16.70713 -16.54389 -16.20152 -15.48109 -15.24204 -14.85383 -14.56886 -14.23912 -14.09258 -14.01182 -13.93853 -13.46494 -13.35863 -13.12812 -12.97029 -12.70122 -12.45978 -12.29889 -12.09684 -11.80231 -11.50796 -11.35837 -11.12521 -10.94017 -10.84331 -10.76337 -10.44872 -10.44116 -10.19298 -10.05388 -9.95144 -9.80062 -9.57987 -9.52132 -8.87376 -8.53953 -8.27547 -6.65211 -5.82481 -3.31708 1.35044 2.56039 2.60571 3.12975 3.32653 3.40383 3.41575 3.57403 3.87830 4.05034 4.21369 4.43778 4.48543 4.69925 4.93908 5.10388 5.17125 5.29584 5.37213 5.42653 5.47401 5.63176 5.67280 5.78196 5.79573 5.86053 5.86726 6.00827 6.16035 6.34834 6.45609 6.45936 6.54938 6.57986 6.73160 6.86598 7.02742 7.12868 7.13398 7.37502 7.66946 7.73860 7.76262 8.07538 8.23371 8.44070 8.81418 9.17317 9.78828 10.38350 11.24824 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012709 B = 0.003790 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.623429 B = 7385.731672 C = 8065.535368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.142 3.858 11 C -0.124 4.124 12 C -0.120 4.120 13 C 0.159 3.841 14 C 0.068 3.932 15 O -0.560 6.560 16 N -0.688 5.688 17 C 0.503 3.497 18 O -0.530 6.530 19 C -0.131 4.131 20 C -0.105 4.105 21 H 0.130 0.870 22 C -0.157 4.157 23 C 0.531 3.469 24 O -0.494 6.494 25 N -0.686 5.686 26 C 0.522 3.478 27 O -0.435 6.435 28 C 0.177 3.823 29 H 0.255 0.745 30 H 0.051 0.949 31 H 0.016 0.984 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.366 0.634 39 H 0.406 0.594 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.412 0.588 45 H 0.104 0.896 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.538 -7.603 -13.291 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.164 4.164 12 C -0.158 4.158 13 C 0.071 3.929 14 C -0.011 4.011 15 O -0.363 6.363 16 N -0.338 5.338 17 C 0.288 3.712 18 O -0.408 6.408 19 C -0.172 4.172 20 C -0.127 4.127 21 H 0.148 0.852 22 C -0.197 4.197 23 C 0.319 3.681 24 O -0.366 6.366 25 N -0.352 5.352 26 C 0.308 3.692 27 O -0.301 6.301 28 C 0.051 3.949 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.211 0.789 39 H 0.242 0.758 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.251 0.749 45 H 0.122 0.878 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.689 -8.254 -12.932 15.779 hybrid contribution 0.375 0.691 0.026 0.786 sum 4.064 -7.564 -12.905 15.501 Atomic orbital electron populations 1.69962 1.05222 1.25602 1.53350 1.25181 0.95341 0.98343 1.00203 0.86300 0.79049 0.83724 0.77681 1.21361 1.21726 1.20505 1.19149 0.90886 0.83805 1.45106 0.91809 1.44016 1.32689 1.03623 1.50994 1.20987 0.97535 0.87203 0.92715 1.21869 0.97279 0.98563 0.98657 1.21737 0.98078 0.96983 0.99046 1.21178 0.83619 0.97456 0.90669 1.22575 0.96512 0.86094 0.95892 1.86578 1.48771 1.34281 1.66677 1.45801 1.33843 1.26967 1.27157 1.20209 0.84151 0.84702 0.82146 1.90680 1.54353 1.21540 1.74190 1.21629 1.00433 0.99225 0.95890 1.21789 1.00926 0.93280 0.96662 0.85173 1.22618 0.94434 0.99819 1.02795 1.20778 0.86912 0.83149 0.77220 1.90808 1.24646 1.75838 1.45316 1.44904 1.22384 1.27468 1.40486 1.20725 0.79931 0.87579 0.81014 1.90914 1.60593 1.51222 1.27407 1.20993 0.88672 0.97087 0.88177 0.93489 0.93032 0.96570 0.92646 0.93370 0.92454 0.90714 0.92200 0.93960 0.78894 0.75806 0.87118 0.88762 0.85925 0.85797 0.74862 0.87836 0.95346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 11.10 55.49 0.62 -24.32 16 2 C 0.01 0.24 5.04 -17.43 -0.09 0.15 16 3 Si 0.90 20.65 29.57 -169.99 -5.03 15.63 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.67 9.58 -15.06 -0.14 -6.82 16 8 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 9 N -0.59 -13.94 2.85 -172.32 -0.49 -14.43 16 10 C 0.14 2.95 6.52 -3.71 -0.02 2.93 16 11 C -0.12 -2.29 5.93 -26.62 -0.16 -2.45 16 12 C -0.12 -2.20 4.52 -26.69 -0.12 -2.32 16 13 C 0.16 2.97 0.45 -131.70 -0.06 2.91 16 14 C 0.07 1.17 5.68 37.16 0.21 1.38 16 15 O -0.56 -9.33 12.98 -35.23 -0.46 -9.79 16 16 N -0.69 -11.76 4.04 -47.50 -0.19 -11.95 16 17 C 0.50 7.63 6.91 -10.98 -0.08 7.55 16 18 O -0.53 -9.22 9.83 -17.44 -0.17 -9.39 16 19 C -0.13 -1.34 5.04 -27.88 -0.14 -1.48 16 20 C -0.10 -0.92 2.72 -90.83 -0.25 -1.17 16 21 H 0.13 1.11 8.03 -51.92 -0.42 0.70 16 22 C -0.16 -0.97 6.67 -26.94 -0.18 -1.15 16 23 C 0.53 4.84 8.55 -11.09 -0.09 4.75 16 24 O -0.49 -6.09 18.02 5.60 0.10 -5.99 16 25 N -0.69 -6.29 5.48 -11.40 -0.06 -6.35 16 26 C 0.52 6.00 7.71 -11.09 -0.09 5.91 16 27 O -0.44 -6.96 15.42 -17.41 -0.27 -7.23 16 28 C 0.18 4.02 3.75 -3.71 -0.01 4.00 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 31 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.05 1.05 7.53 -51.93 -0.39 0.66 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.43 6.26 -51.93 -0.33 1.11 16 36 H 0.06 1.03 6.16 -51.93 -0.32 0.71 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.37 4.30 9.12 45.56 0.42 4.71 16 39 H 0.41 7.28 8.43 -40.82 -0.34 6.93 16 40 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.12 0.58 7.74 -51.93 -0.40 0.18 16 44 H 0.41 3.29 8.96 -40.82 -0.37 2.92 16 45 H 0.10 2.67 5.88 -51.93 -0.31 2.36 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -33.90 367.01 -7.44 -41.34 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -5.80 Total: 12.77 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -1.22 Total: 14.19 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.13 Total: -57.07 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.80 Total: -32.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.90 -7.44 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501374021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.676 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds