Wall clock time and date at job start Sat Apr 11 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99547 * 2 1 4 4 C 1.52997 * 109.46929 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47640 * 64.63154 * 4 3 2 6 6 C 1.36907 * 120.00235 * 264.07762 * 5 4 3 7 7 H 1.08001 * 119.99552 * 139.08992 * 6 5 4 8 8 C 1.39018 * 119.99980 * 319.09169 * 6 5 4 9 9 N 1.31381 * 119.99681 * 162.40788 * 8 6 5 10 10 Si 1.86802 * 120.00154 * 342.40943 * 8 6 5 11 11 H 1.48507 * 109.47151 * 93.14973 * 10 8 6 12 12 H 1.48499 * 109.47102 * 213.15215 * 10 8 6 13 13 H 1.48509 * 109.46756 * 333.15378 * 10 8 6 14 14 C 1.34774 * 119.99492 * 84.07145 * 5 4 3 15 15 O 1.21621 * 120.00562 * 4.42448 * 14 5 4 16 16 C 1.47502 * 119.99799 * 184.42270 * 14 5 4 17 17 C 1.39776 * 120.07648 * 324.72785 * 16 14 5 18 18 C 1.37773 * 119.99856 * 179.97438 * 17 16 14 19 19 C 1.38854 * 120.15334 * 359.97438 * 18 17 16 20 20 O 1.35804 * 119.92146 * 179.97438 * 19 18 17 21 21 C 1.42897 * 116.99920 * 0.03071 * 20 19 18 22 22 C 1.39424 * 120.15444 * 0.03291 * 19 18 17 23 23 O 1.35996 * 119.99625 * 179.97438 * 22 19 18 24 24 C 1.42903 * 116.99519 * 179.97438 * 23 22 19 25 25 C 1.53005 * 109.46995 * 179.97438 * 24 23 22 26 26 O 1.42904 * 109.46695 * 65.00548 * 25 24 23 27 27 C 1.38120 * 119.99929 * 0.22390 * 22 19 18 28 28 H 1.08998 * 109.47549 * 299.99854 * 1 2 3 29 29 H 1.09005 * 109.47425 * 60.00207 * 1 2 3 30 30 H 1.09007 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47260 * 60.00314 * 3 2 1 32 32 H 1.08996 * 109.46860 * 299.99698 * 3 2 1 33 33 H 1.09006 * 109.46910 * 304.63607 * 4 3 2 34 34 H 1.08997 * 109.47284 * 184.64118 * 4 3 2 35 35 H 0.96997 * 119.99377 * 180.02562 * 9 8 6 36 36 H 1.08001 * 119.99786 * 359.95363 * 17 16 14 37 37 H 1.08000 * 119.92448 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47166 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47237 * 299.99470 * 21 20 19 40 40 H 1.09008 * 109.47355 * 59.99458 * 21 20 19 41 41 H 1.08999 * 109.46828 * 60.01023 * 24 23 22 42 42 H 1.09000 * 109.47721 * 300.00119 * 24 23 22 43 43 H 1.08996 * 109.47517 * 185.00094 * 25 24 23 44 44 H 1.08995 * 109.47264 * 305.00525 * 25 24 23 45 45 H 0.96699 * 113.99819 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.07489 * 179.74754 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9750 0.5566 -1.2489 6 6 4.2130 -0.7910 -1.2903 7 1 3.8969 -1.3691 -2.1461 8 6 4.8615 -1.4152 -0.2309 9 7 4.7902 -2.7199 -0.0941 10 14 5.8342 -0.3989 0.9981 11 1 4.9641 -0.0485 2.1494 12 1 6.9987 -1.1850 1.4789 13 1 6.3130 0.8449 0.3430 14 6 4.1452 1.3053 -2.3566 15 8 4.0120 2.5129 -2.3007 16 6 4.4929 0.6602 -3.6366 17 6 5.3273 -0.4611 -3.6519 18 6 5.6507 -1.0628 -4.8484 19 6 5.1491 -0.5583 -6.0409 20 8 5.4713 -1.1547 -7.2176 21 6 6.3292 -2.2957 -7.1530 22 6 4.3164 0.5600 -6.0330 23 8 3.8273 1.0518 -7.2028 24 6 2.9798 2.1994 -7.1201 25 6 2.5315 2.6046 -8.5258 26 8 1.7157 1.5715 -9.0818 27 6 3.9924 1.1713 -4.8376 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8518 0.5737 0.8447 34 1 3.9784 2.1772 0.0825 35 1 5.2424 -3.1554 0.6454 36 1 5.7188 -0.8556 -2.7259 37 1 6.2958 -1.9289 -4.8589 38 1 6.5063 -2.6745 -8.1596 39 1 7.2786 -2.0112 -6.6994 40 1 5.8569 -3.0719 -6.5508 41 1 3.5275 3.0232 -6.6624 42 1 2.1056 1.9627 -6.5137 43 1 1.9587 3.5303 -8.4718 44 1 3.4072 2.7554 -9.1571 45 1 1.3952 1.7609 -9.9743 46 1 3.3508 2.0400 -4.8304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556908071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:53 Heat of formation + Delta-G solvation = -148.349479 kcal Electronic energy + Delta-G solvation = -30683.304584 eV Core-core repulsion = 26347.669131 eV Total energy + Delta-G solvation = -4335.635453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25606 -39.00010 -38.36845 -37.19666 -36.71074 -35.79272 -34.91575 -32.03661 -30.80093 -30.05082 -29.54511 -28.54641 -26.98179 -25.83664 -24.97094 -23.58051 -22.83870 -21.97174 -21.02521 -19.39242 -18.34768 -17.74692 -17.36253 -16.96478 -16.18410 -16.16003 -15.74343 -15.69527 -15.28517 -15.04942 -14.73306 -14.60826 -14.31288 -14.22989 -14.08765 -13.84581 -13.66973 -13.24373 -13.02098 -12.57065 -12.28114 -12.19615 -11.97733 -11.83013 -11.66678 -11.59313 -11.40207 -11.07696 -10.95066 -10.86793 -10.79324 -10.65268 -10.47494 -10.18048 -9.97650 -9.96091 -9.25611 -9.11672 -8.65114 -8.25071 -7.78643 -7.31032 -6.43924 -4.04338 1.59271 1.95187 3.04482 3.20175 3.26735 3.40528 3.56808 3.65358 4.09592 4.10969 4.21087 4.37794 4.49903 4.90088 5.00592 5.05877 5.15499 5.21820 5.34083 5.36881 5.46050 5.54595 5.58255 5.62600 5.63237 5.70786 5.72598 5.81454 5.83023 5.86754 5.92624 6.00340 6.02993 6.14457 6.21483 6.41298 6.66359 6.92608 7.11911 7.22172 7.33338 7.37076 7.49182 7.75817 7.95256 8.06532 8.27057 8.92622 9.30210 9.61357 10.64814 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.004058 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.536296 B = 6897.625598 C = 8334.088117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.446 5.446 6 C -0.331 4.331 7 H 0.110 0.890 8 C 0.070 3.930 9 N -0.855 5.855 10 Si 0.870 3.130 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.260 1.260 14 C 0.522 3.478 15 O -0.600 6.600 16 C -0.098 4.098 17 C -0.054 4.054 18 C -0.190 4.190 19 C 0.106 3.894 20 O -0.310 6.310 21 C 0.027 3.973 22 C 0.077 3.923 23 O -0.300 6.300 24 C 0.056 3.944 25 C 0.081 3.919 26 O -0.564 6.564 27 C -0.131 4.131 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.275 0.725 36 H 0.167 0.833 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.377 0.623 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 5.434 -10.377 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.023 4.023 4 C -0.024 4.024 5 N -0.165 5.165 6 C -0.458 4.458 7 H 0.127 0.873 8 C -0.138 4.138 9 N -0.490 5.490 10 Si 0.697 3.303 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.184 1.184 14 C 0.312 3.688 15 O -0.486 6.486 16 C -0.101 4.101 17 C -0.072 4.072 18 C -0.209 4.209 19 C 0.061 3.939 20 O -0.224 6.224 21 C -0.068 4.068 22 C 0.032 3.968 23 O -0.215 6.215 24 C -0.019 4.019 25 C 0.003 3.997 26 O -0.369 6.369 27 C -0.151 4.151 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.184 0.816 37 H 0.152 0.848 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.223 0.777 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.956 5.355 -10.004 11.515 hybrid contribution 0.070 0.723 0.661 0.982 sum -1.886 6.078 -9.344 11.305 Atomic orbital electron populations 1.22663 0.82895 1.02146 0.98798 1.88192 1.17811 1.26720 1.95041 1.22864 0.94887 0.85185 0.99403 1.21791 0.92284 0.99013 0.89345 1.43489 1.57312 1.08373 1.07315 1.19112 1.37503 0.80800 1.08371 0.87261 1.25280 0.96252 0.95270 0.96972 1.69717 1.39818 1.08831 1.30622 0.87045 0.80155 0.81266 0.81792 1.19978 1.21341 1.18413 1.18121 0.80184 0.85805 0.84647 1.90621 1.57399 1.14109 1.86500 1.19556 1.00525 0.97238 0.92752 1.21982 0.94300 0.92165 0.98792 1.21091 1.05303 1.03285 0.91178 1.18412 0.97319 0.92720 0.85487 1.86076 1.64895 1.43447 1.27937 1.23017 0.93321 0.87143 1.03332 1.17880 0.98809 0.94794 0.85325 1.86153 1.62914 1.44800 1.27635 1.22804 0.94008 0.88181 0.96931 1.22187 0.93964 0.89900 0.93639 1.86618 1.70099 1.45075 1.35121 1.20988 1.02790 1.00999 0.90288 0.95114 0.94868 0.90046 0.93774 0.93271 0.90198 0.89844 0.91506 0.81596 0.84841 0.88785 0.92828 0.92581 0.90623 0.91428 0.91719 0.92573 0.77651 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.64 10.44 -35.23 -0.37 -8.00 16 3 C 0.05 1.07 6.24 37.16 0.23 1.31 16 4 C 0.10 2.17 4.31 -4.04 -0.02 2.15 16 5 N -0.45 -10.72 2.09 -116.00 -0.24 -10.97 16 6 C -0.33 -8.39 6.43 -15.00 -0.10 -8.48 16 7 H 0.11 2.98 6.49 -52.49 -0.34 2.63 16 8 C 0.07 1.79 5.31 -17.46 -0.09 1.69 16 9 N -0.86 -22.93 13.96 55.50 0.77 -22.16 16 10 Si 0.87 19.88 24.96 -169.99 -4.24 15.63 16 11 H -0.27 -6.07 6.65 56.52 0.38 -5.69 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.26 -6.00 7.11 56.52 0.40 -5.59 16 14 C 0.52 12.46 7.32 -12.49 -0.09 12.37 16 15 O -0.60 -14.99 16.47 5.26 0.09 -14.90 16 16 C -0.10 -2.13 5.46 -104.97 -0.57 -2.70 16 17 C -0.05 -1.12 7.73 -39.18 -0.30 -1.42 16 18 C -0.19 -3.44 9.01 -39.52 -0.36 -3.80 16 19 C 0.11 1.97 6.71 -38.91 -0.26 1.70 16 20 O -0.31 -5.25 10.27 -33.79 -0.35 -5.60 16 21 C 0.03 0.33 9.81 101.05 0.99 1.32 16 22 C 0.08 1.46 6.69 -39.18 -0.26 1.19 16 23 O -0.30 -5.32 9.88 -40.80 -0.40 -5.73 16 24 C 0.06 0.78 5.12 37.16 0.19 0.97 16 25 C 0.08 0.85 7.43 37.16 0.28 1.13 16 26 O -0.56 -6.70 13.62 -40.08 -0.55 -7.25 16 27 C -0.13 -2.58 8.59 -39.04 -0.34 -2.92 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.81 3.63 -51.93 -0.19 1.62 16 34 H 0.08 1.75 7.55 -51.93 -0.39 1.36 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.17 3.67 5.67 -52.49 -0.30 3.38 16 37 H 0.13 2.06 6.27 -52.49 -0.33 1.73 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 40 H 0.06 0.65 7.65 -51.92 -0.40 0.25 16 41 H 0.08 0.93 7.65 -51.93 -0.40 0.53 16 42 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.38 2.39 9.12 45.56 0.42 2.81 16 46 H 0.13 2.47 6.22 -52.49 -0.33 2.14 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -33.59 378.74 -4.76 -38.35 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.59 Total: 8.77 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 0.41 Total: 6.14 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.53 Total: -33.12 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.58 Total: -41.48 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.24 Total: 15.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.59 -4.76 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556908071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.997 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds