Wall clock time and date at job start Sat Apr 11 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47308 * 2 1 4 4 N 1.40444 * 126.82630 * 270.29397 * 3 2 1 5 5 C 1.30712 * 106.79196 * 180.15879 * 4 3 2 6 6 N 1.33246 * 108.94935 * 359.58802 * 5 4 3 7 7 C 1.30837 * 109.82318 * 0.27015 * 6 5 4 8 8 C 1.50707 * 125.95532 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.46881 * 90.02825 * 8 7 6 10 10 C 1.46905 * 110.99597 * 179.97438 * 9 8 7 11 11 H 1.08997 * 110.88595 * 31.12009 * 10 9 8 12 12 C 1.55158 * 111.00311 * 154.99827 * 10 9 8 13 13 C 1.54316 * 102.94207 * 153.57424 * 12 10 9 14 14 N 1.47020 * 107.27463 * 337.80573 * 13 12 10 15 15 C 1.34771 * 125.65164 * 178.98764 * 14 13 12 16 16 O 1.21277 * 120.00026 * 179.97438 * 15 14 13 17 17 C 1.50696 * 120.00051 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47444 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00416 * 180.02562 * 18 17 15 20 20 H 1.08009 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00128 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00096 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99873 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46669 * 59.99938 * 23 21 19 25 25 H 1.48499 * 109.47081 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47115 * 300.00131 * 23 21 19 27 27 C 1.47424 * 108.69998 * 358.94032 * 14 13 12 28 28 H 1.08997 * 109.47339 * 299.99552 * 1 2 3 29 29 H 1.09000 * 109.47523 * 59.99595 * 1 2 3 30 30 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47068 * 240.00415 * 2 1 3 32 32 H 1.09000 * 109.47523 * 120.00405 * 2 1 3 33 33 H 1.08002 * 125.52876 * 179.86251 * 5 4 3 34 34 H 1.09004 * 109.46634 * 210.02269 * 8 7 6 35 35 H 1.08999 * 109.47156 * 330.02346 * 8 7 6 36 36 H 1.00892 * 111.00387 * 56.04172 * 9 8 7 37 37 H 1.09006 * 110.72072 * 271.94191 * 12 10 9 38 38 H 1.09007 * 110.72064 * 35.20862 * 12 10 9 39 39 H 1.08996 * 109.88589 * 97.22660 * 13 12 10 40 40 H 1.09008 * 109.88412 * 218.38930 * 13 12 10 41 41 H 1.09002 * 109.47359 * 300.00382 * 17 15 14 42 42 H 1.09003 * 109.47607 * 59.99898 * 17 15 14 43 43 H 0.96995 * 119.99956 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36596 * 265.29023 * 27 14 13 45 45 H 1.08999 * 110.36861 * 142.96765 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1768 -1.1242 5 6 2.7083 3.3326 -0.6764 6 7 2.6999 3.3089 0.6558 7 6 2.2868 2.1408 1.0761 8 6 2.1386 1.7201 2.5157 9 7 0.7845 2.0446 2.9837 10 6 0.6030 1.6472 4.3862 11 1 1.5419 1.7191 4.9352 12 6 -0.5048 2.4950 5.0656 13 6 -1.0196 1.5610 6.1809 14 7 -0.6718 0.1859 5.7942 15 6 -0.9321 -0.9226 6.5151 16 8 -0.5983 -2.0106 6.0962 17 6 -1.6380 -0.8100 7.8418 18 16 -1.8391 -2.4592 8.5601 19 6 -2.6677 -2.0416 10.0580 20 1 -2.8933 -1.0091 10.2806 21 6 -3.0295 -3.0395 10.9523 22 7 -2.7532 -4.2977 10.6818 23 14 -3.9074 -2.5967 12.5407 24 1 -5.1888 -1.9161 12.2248 25 1 -4.1821 -3.8332 13.3157 26 1 -3.0495 -1.6887 13.3439 27 6 0.0080 0.2204 4.4864 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.0052 4.1724 -1.2872 34 1 2.3041 0.6459 2.5991 35 1 2.8706 2.2490 3.1260 36 1 0.0861 1.6178 2.3939 37 1 -0.0864 3.4079 5.4894 38 1 -1.3013 2.7267 4.3584 39 1 -0.5394 1.8129 7.1264 40 1 -2.1014 1.6572 6.2751 41 1 -1.0474 -0.1899 8.5162 42 1 -2.6177 -0.3555 7.6947 43 1 -3.0057 -4.9949 11.3070 44 1 -0.7079 0.0505 3.6822 45 1 0.8024 -0.5251 4.4521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566760921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:12 Heat of formation + Delta-G solvation = 62.956174 kcal Electronic energy + Delta-G solvation = -26361.448592 eV Core-core repulsion = 22542.314413 eV Total energy + Delta-G solvation = -3819.134179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.50188 -40.02206 -37.90607 -35.90056 -35.18652 -32.46114 -32.24396 -30.88765 -30.45276 -29.70191 -28.05022 -25.83200 -25.42873 -24.52627 -23.27848 -22.23630 -21.28720 -20.58750 -19.42984 -17.84642 -17.51729 -16.95328 -16.71683 -16.22774 -16.00431 -15.57775 -14.96266 -14.83763 -14.77387 -14.54053 -14.14051 -14.03209 -13.88897 -13.61393 -13.49562 -13.26440 -12.98599 -12.71966 -12.60299 -12.57428 -12.25736 -11.93414 -11.85059 -11.80541 -11.65469 -11.08516 -11.07412 -11.05619 -10.79984 -10.33294 -10.13311 -10.01165 -9.86265 -9.54032 -9.08859 -9.05747 -8.60243 -8.28467 -6.54419 -6.24581 -3.95823 1.15705 1.84444 2.53749 2.80761 2.96989 3.21465 3.22391 3.26848 3.44067 3.58164 3.77509 3.96520 4.13168 4.18095 4.32876 4.37065 4.39081 4.46947 4.60745 4.69148 4.87611 4.96058 4.97414 4.99706 5.05317 5.10616 5.14028 5.22828 5.38058 5.43333 5.51290 5.56044 5.57555 5.69668 5.76527 5.90201 5.90850 6.07205 6.09269 6.21326 6.33561 6.43886 6.67365 7.55100 7.57052 7.74480 8.32010 8.45910 9.20621 10.82791 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029561 B = 0.001901 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.964095 B =14728.290320 C =15338.011880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.373 5.373 4 N -0.319 5.319 5 C 0.197 3.803 6 N -0.526 5.526 7 C 0.281 3.719 8 C 0.135 3.865 9 N -0.664 5.664 10 C 0.075 3.925 11 H 0.101 0.899 12 C -0.116 4.116 13 C 0.100 3.900 14 N -0.624 5.624 15 C 0.549 3.451 16 O -0.516 6.516 17 C -0.147 4.147 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.081 3.919 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.217 0.783 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.343 0.657 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.063 0.937 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.652 14.995 -20.119 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.165 5.165 4 N -0.147 5.147 5 C -0.106 4.106 6 N -0.253 5.253 7 C 0.003 3.997 8 C 0.004 3.996 9 N -0.296 5.296 10 C -0.036 4.036 11 H 0.119 0.881 12 C -0.155 4.155 13 C -0.024 4.024 14 N -0.362 5.362 15 C 0.338 3.662 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.045 4.045 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.234 0.766 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.164 0.836 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.285 13.764 -21.050 26.810 hybrid contribution -1.141 0.496 1.401 1.874 sum 8.145 14.260 -19.649 25.608 Atomic orbital electron populations 1.22219 0.93432 1.03933 1.03233 1.21873 0.95860 0.77443 1.05175 1.50537 1.49029 1.12991 1.03945 1.78056 1.23472 1.04890 1.08262 1.26003 0.97989 0.96143 0.90477 1.70493 1.23911 1.19614 1.11331 1.24099 0.95925 0.87506 0.92121 1.20464 0.93361 0.99428 0.86345 1.60519 1.02844 1.63406 1.02841 1.22857 0.99850 0.92426 0.88480 0.88053 1.22624 0.98020 0.97939 0.96899 1.22077 1.00827 0.81033 0.98456 1.48377 1.60504 1.06734 1.20543 1.20074 0.78407 0.82351 0.85381 1.90705 1.51514 1.26000 1.70815 1.23504 1.02264 1.08304 0.95645 1.85384 1.76637 0.99656 1.21781 1.22814 1.44032 0.96004 1.05551 0.90939 1.24993 0.95620 0.94444 0.98496 1.70003 1.44355 0.99454 1.36467 0.86220 0.79744 0.77948 0.81571 1.19919 1.20795 1.19901 1.22860 0.96882 0.98046 0.86663 0.92151 0.91269 0.89619 0.88034 0.88342 0.76633 0.92341 0.86751 0.83648 0.89316 0.90056 0.90956 0.91018 0.89195 0.89236 0.92104 0.91863 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.12 0.64 7.02 -4.04 -0.03 0.61 16 3 N -0.37 -3.15 3.64 -58.34 -0.21 -3.36 16 4 N -0.32 -3.23 12.70 29.29 0.37 -2.86 16 5 C 0.20 1.82 13.03 -91.81 -1.20 0.63 16 6 N -0.53 -5.55 11.19 -11.96 -0.13 -5.68 16 7 C 0.28 2.48 7.50 -155.69 -1.17 1.31 16 8 C 0.14 0.88 5.87 -4.97 -0.03 0.86 16 9 N -0.66 -4.52 6.40 -105.72 -0.68 -5.20 16 10 C 0.07 0.54 3.38 -65.56 -0.22 0.32 16 11 H 0.10 0.71 7.83 -51.93 -0.41 0.30 16 12 C -0.12 -0.84 6.65 -24.90 -0.17 -1.00 16 13 C 0.10 0.96 6.49 -3.07 -0.02 0.94 16 14 N -0.62 -8.20 3.33 -170.53 -0.57 -8.76 16 15 C 0.55 10.12 7.87 -10.99 -0.09 10.03 16 16 O -0.52 -11.48 16.12 5.56 0.09 -11.39 16 17 C -0.15 -2.92 5.35 36.00 0.19 -2.73 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 23 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.08 0.81 6.50 -2.53 -0.02 0.79 16 28 H 0.06 0.31 6.33 -51.93 -0.33 -0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.37 7.11 -51.93 -0.37 0.00 16 33 H 0.22 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.06 0.29 7.13 -51.93 -0.37 -0.08 16 35 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.34 2.25 6.36 -39.30 -0.25 2.00 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 45 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -36.79 388.99 -10.66 -47.46 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.74 Total: -1.69 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.16 Total: -1.49 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.48 Total: -51.01 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.79 -10.66 -47.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566760921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.412 kcal (2) G-P(sol) polarization free energy of solvation -36.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds