Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35306 * 125.87041 * 2 1 4 4 C 1.35350 * 106.17659 * 180.26171 * 3 2 1 5 5 C 1.50701 * 126.74950 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46948 * 94.95381 * 5 4 3 7 7 C 1.46899 * 111.00282 * 176.33595 * 6 5 4 8 8 H 1.08999 * 109.47059 * 33.84522 * 7 6 5 9 9 C 1.52995 * 109.47609 * 153.84784 * 7 6 5 10 10 N 1.46492 * 109.47361 * 305.00230 * 9 7 6 11 11 C 1.34779 * 120.00724 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99581 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00412 * 179.97438 * 11 10 9 14 14 S 1.80994 * 109.46917 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99988 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00256 * 0.02562 * 15 14 13 17 17 C 1.38805 * 120.00432 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00020 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 119.99629 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47502 * 89.99887 * 19 17 15 21 21 H 1.48504 * 109.47152 * 210.00206 * 19 17 15 22 22 H 1.48502 * 109.47344 * 329.99717 * 19 17 15 23 23 C 1.53008 * 109.47004 * 273.85060 * 7 6 5 24 24 C 1.53001 * 117.49815 * 243.48579 * 23 7 6 25 25 C 1.52999 * 117.50046 * 174.82511 * 23 7 6 26 26 N 1.33770 * 106.49587 * 0.02562 * 4 3 2 27 27 N 1.28630 * 108.88670 * 359.97438 * 26 4 3 28 28 H 1.08992 * 109.47211 * 269.72069 * 1 2 3 29 29 H 1.08999 * 109.46469 * 29.71966 * 1 2 3 30 30 H 1.08997 * 109.46923 * 149.71331 * 1 2 3 31 31 H 1.08001 * 126.91475 * 0.22370 * 3 2 1 32 32 H 1.08996 * 109.47180 * 214.94948 * 5 4 3 33 33 H 1.08996 * 109.47574 * 334.95510 * 5 4 3 34 34 H 1.00899 * 111.00334 * 52.37851 * 6 5 4 35 35 H 1.09008 * 109.47033 * 64.99713 * 9 7 6 36 36 H 1.08993 * 109.47656 * 184.99858 * 9 7 6 37 37 H 0.97006 * 119.99820 * 359.97438 * 10 9 7 38 38 H 1.08997 * 109.46907 * 300.00786 * 13 11 10 39 39 H 1.09003 * 109.46927 * 60.00147 * 13 11 10 40 40 H 0.97005 * 119.99653 * 180.02562 * 18 17 15 41 41 H 1.09007 * 115.55006 * 29.15376 * 23 7 6 42 42 H 1.08996 * 117.49678 * 359.97438 * 24 23 7 43 43 H 1.08994 * 117.50060 * 145.01836 * 24 23 7 44 44 H 1.08996 * 117.50128 * 214.97770 * 25 23 7 45 45 H 1.09005 * 117.49552 * 359.97417 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0964 0.0000 4 6 3.5322 0.6403 -0.0059 5 6 4.7880 1.4733 -0.0078 6 7 5.2671 1.6401 1.3709 7 6 6.5389 2.3746 1.4011 8 1 6.5528 3.1103 0.5971 9 6 6.6845 3.0872 2.7471 10 7 5.5138 3.9367 2.9791 11 6 5.4224 4.6645 4.1098 12 8 6.3098 4.6164 4.9351 13 6 4.2183 5.5388 4.3481 14 16 4.3905 6.3817 5.9405 15 6 2.8904 7.3057 5.9613 16 1 2.1996 7.2327 5.1343 17 6 2.5962 8.1274 7.0406 18 7 1.4753 8.8172 7.0564 19 14 3.7912 8.2542 8.4707 20 1 4.7552 9.3542 8.2143 21 1 3.0397 8.5358 9.7203 22 1 4.5286 6.9733 8.6148 23 6 7.6987 1.3940 1.2151 24 6 8.6894 1.2442 2.3714 25 6 9.1070 1.9799 1.0956 26 7 3.4576 -0.6953 -0.0098 27 7 2.2192 -1.0431 -0.0059 28 1 -0.3633 -0.0050 1.0276 29 1 -0.3632 0.8925 -0.5095 30 1 -0.3633 -0.8874 -0.5183 31 1 1.9382 2.1281 0.0034 32 1 5.5543 0.9741 -0.6008 33 1 4.5747 2.4514 -0.4390 34 1 5.3537 0.7478 1.8340 35 1 6.7598 2.3471 3.5439 36 1 7.5838 3.7029 2.7369 37 1 4.8041 3.9754 2.3188 38 1 4.1436 6.2791 3.5516 39 1 3.3187 4.9234 4.3577 40 1 1.2699 9.3917 7.8105 41 1 7.4723 0.5041 0.6278 42 1 8.5152 1.8444 3.2643 43 1 9.1151 0.2558 2.5445 44 1 9.8072 1.4754 0.4300 45 1 9.2072 3.0641 1.1491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661107343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = 64.301778 kcal Electronic energy + Delta-G solvation = -26164.374459 eV Core-core repulsion = 22345.298629 eV Total energy + Delta-G solvation = -3819.075829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.17166 -40.77773 -39.47722 -36.54765 -35.61013 -34.96229 -34.64529 -32.46981 -31.26439 -29.18788 -28.58052 -27.81692 -26.14306 -24.56603 -23.23113 -22.99344 -22.05186 -21.68661 -20.85970 -19.77163 -18.22182 -17.86569 -17.62011 -17.51149 -17.07433 -16.79011 -16.29736 -16.20016 -15.86540 -15.58256 -15.45711 -15.18819 -14.87732 -14.56307 -14.41072 -14.02026 -13.88567 -13.80722 -13.41545 -13.32298 -13.18799 -12.98987 -12.72581 -12.65685 -12.44974 -12.40564 -12.21143 -11.85222 -11.79405 -11.35015 -11.14964 -10.99651 -10.96102 -10.90629 -10.48981 -10.22253 -9.97868 -9.38471 -8.95952 -8.49644 -6.19277 0.68791 1.02951 1.32669 1.46706 1.49423 1.59404 1.61209 1.67604 2.26394 2.35492 2.76847 2.80071 2.88863 3.24997 3.51202 3.71130 3.78830 3.87348 4.04865 4.09149 4.09944 4.14108 4.23349 4.25860 4.33093 4.33937 4.52684 4.54997 4.60216 4.65131 4.73587 4.74893 4.84446 4.93507 5.04137 5.05219 5.19877 5.23704 5.27942 5.53985 5.70874 5.73181 5.98778 6.13733 6.30126 6.64104 6.96233 7.33277 7.52662 8.62689 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.002708 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.730296 B =10336.836595 C =13034.237707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.291 5.291 3 C -0.020 4.020 4 C -0.038 4.038 5 C 0.152 3.848 6 N -0.678 5.678 7 C 0.121 3.879 8 H 0.109 0.891 9 C 0.134 3.866 10 N -0.695 5.695 11 C 0.531 3.469 12 O -0.571 6.571 13 C -0.107 4.107 14 S -0.180 6.180 15 C -0.525 4.525 16 H 0.064 0.936 17 C 0.046 3.954 18 N -0.918 5.918 19 Si 0.912 3.088 20 H -0.262 1.262 21 H -0.260 1.260 22 H -0.238 1.238 23 C -0.178 4.178 24 C -0.194 4.194 25 C -0.167 4.167 26 N -0.303 5.303 27 N -0.129 5.129 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.227 0.773 32 H 0.051 0.949 33 H 0.116 0.884 34 H 0.344 0.656 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.418 0.582 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.276 0.724 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 -17.190 -21.449 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.084 5.084 3 C -0.173 4.173 4 C -0.177 4.177 5 C 0.022 3.978 6 N -0.308 5.308 7 C 0.011 3.989 8 H 0.127 0.873 9 C 0.009 3.991 10 N -0.348 5.348 11 C 0.316 3.684 12 O -0.450 6.450 13 C -0.258 4.258 14 S 0.046 5.954 15 C -0.673 4.673 16 H 0.082 0.918 17 C -0.159 4.159 18 N -0.556 5.556 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.185 1.185 22 H -0.162 1.162 23 C -0.198 4.198 24 C -0.231 4.231 25 C -0.204 4.204 26 N -0.169 5.169 27 N -0.108 5.108 28 H 0.119 0.881 29 H 0.149 0.851 30 H 0.125 0.875 31 H 0.244 0.756 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.163 0.837 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.256 0.744 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.023 -18.180 -19.926 27.437 hybrid contribution -0.947 0.652 -0.630 1.311 sum 4.076 -17.528 -20.556 27.320 Atomic orbital electron populations 1.22699 0.70168 1.07755 1.06379 1.47638 1.10938 1.04499 1.45363 1.24051 0.90243 0.96048 1.06983 1.22226 0.96747 0.90606 1.08163 1.20203 0.89625 0.98308 0.89700 1.60615 1.28238 1.25833 1.16119 1.21217 0.86441 0.94901 0.96387 0.87318 1.21490 0.87660 0.92569 0.97333 1.45512 1.24229 1.44552 1.20489 1.19959 0.86642 0.79924 0.81845 1.90682 1.41782 1.66446 1.46081 1.23237 1.00256 1.01496 1.00847 1.84754 1.29154 1.56547 1.24905 1.22465 1.05418 1.30156 1.09275 0.91799 1.25534 0.96564 0.93644 1.00193 1.70013 1.24679 1.28056 1.32823 0.85891 0.79834 0.81265 0.79544 1.18688 1.18461 1.16189 1.23018 0.91420 1.01780 1.03585 1.23163 1.03927 1.02681 0.93295 1.23026 0.96666 1.00607 1.00120 1.74965 1.10398 1.13881 1.17696 1.78231 0.96718 1.13707 1.22134 0.88088 0.85141 0.87524 0.75610 0.93081 0.86636 0.83749 0.92771 0.91671 0.74404 0.86773 0.87105 0.91418 0.87025 0.89047 0.88517 0.87791 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 11.39 127.77 1.46 1.78 16 2 N -0.29 -4.22 3.74 -369.24 -1.38 -5.60 16 3 C -0.02 -0.25 11.55 83.49 0.96 0.71 16 4 C -0.04 -0.63 6.72 41.60 0.28 -0.35 16 5 C 0.15 1.73 6.04 85.56 0.52 2.25 16 6 N -0.68 -9.21 5.71 -495.58 -2.83 -12.04 16 7 C 0.12 1.57 2.51 44.92 0.11 1.68 16 8 H 0.11 1.09 7.83 -2.39 -0.02 1.07 16 9 C 0.13 2.70 3.95 86.38 0.34 3.04 16 10 N -0.69 -16.08 5.39 -463.08 -2.49 -18.57 16 11 C 0.53 18.15 7.85 87.66 0.69 18.84 16 12 O -0.57 -24.55 15.86 -3.04 -0.05 -24.59 16 13 C -0.11 -3.99 6.16 71.24 0.44 -3.55 16 14 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16 15 C -0.53 -30.35 10.04 67.96 0.68 -29.66 16 16 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 17 C 0.05 2.68 5.50 84.86 0.47 3.15 16 18 N -0.92 -55.51 13.97 21.65 0.30 -55.21 16 19 Si 0.91 45.02 27.74 68.60 1.90 46.92 16 20 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 23 C -0.18 -2.26 5.55 -10.79 -0.06 -2.32 16 24 C -0.19 -2.94 9.50 30.62 0.29 -2.65 16 25 C -0.17 -2.06 10.01 30.62 0.31 -1.76 16 26 N -0.30 -7.12 12.41 -48.60 -0.60 -7.72 16 27 N -0.13 -2.90 13.17 37.02 0.49 -2.42 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.23 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.05 0.60 7.76 -2.39 -0.02 0.59 16 33 H 0.12 0.76 8.12 -2.39 -0.02 0.74 16 34 H 0.34 5.86 8.41 -89.69 -0.75 5.10 16 35 H 0.05 1.31 6.89 -2.38 -0.02 1.29 16 36 H 0.07 1.41 7.60 -2.39 -0.02 1.39 16 37 H 0.42 7.32 8.14 -92.70 -0.75 6.56 16 38 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 39 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 40 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 41 H 0.11 1.40 7.88 -2.38 -0.02 1.38 16 42 H 0.09 1.69 5.80 -2.39 -0.01 1.67 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 45 H 0.10 1.22 8.00 -2.38 -0.02 1.20 16 Total: -1.00 -81.82 392.04 0.25 -81.57 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.52 Total: 16.64 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 6.48 Total: -8.84 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -6.52 Total: -101.56 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal Total: -81.82 0.25 -81.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661107343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.870 kcal (2) G-P(sol) polarization free energy of solvation -81.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds