Wall clock time and date at job start Sat Apr 11 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 S 1.81004 * 109.46896 * 179.97438 * 5 3 2 7 7 C 1.76205 * 99.99950 * 180.02562 * 6 5 3 8 8 H 1.07997 * 120.00211 * 359.97438 * 7 6 5 9 9 C 1.38799 * 119.99841 * 179.97438 * 7 6 5 10 10 N 1.31627 * 120.00169 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99783 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47512 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47031 * 120.00162 * 11 9 7 14 14 H 1.48506 * 109.46987 * 239.99996 * 11 9 7 15 15 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 16 16 H 1.09003 * 110.29150 * 180.66995 * 15 2 1 17 17 C 1.54270 * 110.32111 * 58.54252 * 15 2 1 18 18 C 1.54382 * 105.05750 * 241.10518 * 17 15 2 19 19 N 1.48553 * 104.59699 * 23.85508 * 18 17 15 20 20 C 1.46896 * 110.99982 * 200.95880 * 19 18 17 21 21 C 1.50701 * 109.47141 * 290.12440 * 20 19 18 22 22 C 1.35354 * 126.90827 * 94.68437 * 21 20 19 23 23 N 1.33774 * 106.49270 * 179.90483 * 22 21 20 24 24 N 1.28641 * 108.88587 * 0.37004 * 23 22 21 25 25 N 1.28711 * 110.17599 * 359.76181 * 24 23 22 26 26 C 1.46505 * 125.86316 * 180.02562 * 25 24 23 27 27 C 1.48557 * 104.22209 * 320.51412 * 19 18 17 28 28 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 30 30 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 31 31 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 32 32 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 33 33 H 0.97001 * 120.00208 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.32484 * 0.02562 * 17 15 2 35 35 H 1.09002 * 110.32105 * 122.21482 * 17 15 2 36 36 H 1.09000 * 110.40889 * 142.63520 * 18 17 15 37 37 H 1.09003 * 110.40763 * 265.07134 * 18 17 15 38 38 H 1.08996 * 109.47405 * 50.12470 * 20 19 18 39 39 H 1.09000 * 109.47494 * 170.12806 * 20 19 18 40 40 H 1.07994 * 126.75512 * 0.03965 * 22 21 20 41 41 H 1.09000 * 109.47139 * 269.97783 * 26 25 24 42 42 H 1.08997 * 109.47134 * 29.98156 * 26 25 24 43 43 H 1.09000 * 109.46531 * 149.97887 * 26 25 24 44 44 H 1.09005 * 110.41377 * 280.70306 * 27 19 18 45 45 H 1.09004 * 110.41147 * 158.25905 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4415 5.2082 0.0026 8 1 0.3762 5.0306 0.0024 9 6 1.9283 6.5081 0.0039 10 7 3.2266 6.7247 0.0047 11 14 0.7408 7.9500 0.0047 12 1 -0.6547 7.4422 0.0030 13 1 0.9660 8.7761 1.2180 14 1 0.9670 8.7782 -1.2071 15 6 2.1975 -1.2687 -0.0006 16 1 3.2719 -1.0849 0.0115 17 6 1.8116 -2.1096 -1.2350 18 6 1.1979 -3.4051 -0.6619 19 7 0.7230 -3.0265 0.6938 20 6 0.5714 -4.2115 1.5485 21 6 -0.5963 -5.0329 1.0660 22 6 -0.5533 -6.0881 0.2194 23 7 -1.8146 -6.5088 0.0724 24 7 -2.5883 -5.7585 0.7749 25 7 -1.8993 -4.8602 1.3872 26 6 -2.4341 -3.8283 2.2792 27 6 1.7845 -2.1269 1.2144 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8901 0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 3.5668 7.6331 0.0060 34 1 1.0775 -1.5782 -1.8407 35 1 2.6968 -2.3401 -1.8278 36 1 0.3623 -3.7352 -1.2790 37 1 1.9545 -4.1869 -0.5951 38 1 1.4806 -4.8110 1.5032 39 1 0.3943 -3.8975 2.5772 40 1 0.3265 -6.5092 -0.2443 41 1 -2.6803 -2.9388 1.6992 42 1 -3.3326 -4.2023 2.7699 43 1 -1.6872 -3.5761 3.0319 44 1 2.6328 -2.7087 1.5749 45 1 1.3904 -1.4946 2.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698556071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:53 Heat of formation + Delta-G solvation = 85.725489 kcal Electronic energy + Delta-G solvation = -26977.373626 eV Core-core repulsion = 23159.226798 eV Total energy + Delta-G solvation = -3818.146827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.60241 -40.26447 -38.49727 -35.40920 -34.90273 -33.07455 -32.45189 -30.72333 -29.68923 -28.41421 -28.11658 -26.79488 -25.76741 -25.44388 -22.90799 -22.05440 -21.44208 -20.70505 -19.06681 -17.78130 -17.55262 -17.15473 -17.01472 -16.34780 -15.89397 -15.45102 -15.35930 -15.12877 -14.82741 -14.31672 -14.25112 -13.81207 -13.68809 -13.36508 -13.33768 -13.07181 -12.79039 -12.54031 -12.45743 -12.30635 -12.20031 -12.11086 -11.89210 -11.79277 -11.54944 -11.15016 -11.09159 -11.07419 -11.03161 -10.77136 -10.42575 -9.81834 -9.61067 -9.39505 -9.09633 -9.05488 -8.52786 -8.24722 -6.52614 -6.24095 -3.94647 1.18473 2.01305 2.22349 2.89825 2.99866 3.19568 3.24362 3.29240 3.50608 3.58241 3.86355 4.10508 4.18014 4.23889 4.35612 4.46444 4.58664 4.63792 4.81991 4.85685 4.90860 4.95498 4.99108 5.04789 5.10091 5.11254 5.24864 5.33019 5.41764 5.46241 5.49850 5.52439 5.63080 5.74382 5.79076 5.83989 5.88286 5.91309 6.11701 6.16555 6.30294 6.38791 6.66668 7.52595 7.57815 8.17440 8.33130 8.52161 9.21460 10.83371 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.002163 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.901777 B =12943.726811 C =13745.690504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.534 3.466 4 O -0.519 6.519 5 C -0.148 4.148 6 S -0.063 6.063 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.141 3.859 16 H 0.110 0.890 17 C -0.136 4.136 18 C 0.035 3.965 19 N -0.508 5.508 20 C 0.114 3.886 21 C -0.005 4.005 22 C -0.046 4.046 23 N -0.272 5.272 24 N -0.088 5.088 25 N -0.278 5.278 26 C 0.082 3.918 27 C 0.023 3.977 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.186 0.814 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.880 -24.092 4.356 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.348 5.348 3 C 0.322 3.678 4 O -0.393 6.393 5 C -0.299 4.299 6 S 0.163 5.837 7 C -0.682 4.682 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.036 3.964 16 H 0.128 0.872 17 C -0.175 4.175 18 C -0.093 4.093 19 N -0.233 5.233 20 C -0.016 4.016 21 C -0.139 4.139 22 C -0.205 4.205 23 N -0.137 5.137 24 N -0.068 5.068 25 N -0.072 5.072 26 C -0.059 4.059 27 C -0.105 4.105 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.203 0.797 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.077 0.923 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.919 -24.253 4.122 25.844 hybrid contribution -0.502 1.049 0.274 1.195 sum -8.421 -23.203 4.396 25.073 Atomic orbital electron populations 1.21779 0.79472 1.03522 1.01677 1.47851 1.06906 1.04822 1.75258 1.20390 0.87921 0.84647 0.74866 1.90683 1.13793 1.86790 1.48054 1.23543 1.04487 0.97163 1.04701 1.85392 1.08141 0.93425 1.96702 1.22890 0.94310 0.92171 1.58815 0.90913 1.24996 0.95676 0.98401 0.94556 1.70025 1.11728 1.21565 1.46950 0.86120 0.80346 0.81129 0.77916 1.19621 1.20563 1.20560 1.21671 0.98339 0.83236 0.93183 0.87188 1.22737 1.01563 0.95260 0.97907 1.23151 0.98936 0.96885 0.90290 1.65452 1.42157 1.13196 1.02509 1.20636 0.92904 0.90560 0.97461 1.21941 0.86786 1.01175 1.03974 1.23355 0.97170 0.97809 1.02148 1.75103 1.01211 1.20602 1.16758 1.78337 1.20749 0.99379 1.08318 1.47174 1.05351 1.22838 1.31828 1.22274 1.01544 0.89083 0.92983 1.23544 0.93308 0.95329 0.98333 0.93306 0.91184 0.89745 0.89317 0.89285 0.92237 0.90116 0.90320 0.89994 0.93113 0.91149 0.89183 0.79735 0.88520 0.88225 0.88398 0.92293 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 9.30 59.85 0.56 1.36 16 2 N -0.61 -7.94 2.74 -172.34 -0.47 -8.41 16 3 C 0.53 9.65 7.69 -10.98 -0.08 9.56 16 4 O -0.52 -11.32 15.22 5.56 0.08 -11.23 16 5 C -0.15 -2.93 4.71 36.00 0.17 -2.76 16 6 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 7 C -0.53 -14.99 9.50 30.94 0.29 -14.70 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 10 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 11 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.14 1.49 3.47 -66.54 -0.23 1.26 16 16 H 0.11 1.39 6.96 -51.93 -0.36 1.03 16 17 C -0.14 -1.18 6.48 -25.34 -0.16 -1.34 16 18 C 0.04 0.24 5.86 -2.18 -0.01 0.23 16 19 N -0.51 -3.31 4.24 -231.42 -0.98 -4.29 16 20 C 0.11 0.59 5.04 -4.98 -0.03 0.56 16 21 C -0.01 -0.04 6.03 -82.09 -0.50 -0.54 16 22 C -0.05 -0.39 11.85 -17.73 -0.21 -0.60 16 23 N -0.27 -3.19 12.41 30.23 0.38 -2.81 16 24 N -0.09 -0.99 13.17 60.35 0.79 -0.20 16 25 N -0.28 -2.23 3.74 -63.79 -0.24 -2.47 16 26 C 0.08 0.33 11.21 59.85 0.67 1.01 16 27 C 0.02 0.18 5.42 -2.18 -0.01 0.17 16 28 H 0.05 0.49 7.91 -51.93 -0.41 0.08 16 29 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 30 H 0.08 0.72 6.27 -51.93 -0.33 0.40 16 31 H 0.09 1.65 8.11 -51.91 -0.42 1.23 16 32 H 0.09 1.62 7.40 -51.91 -0.38 1.24 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.08 0.79 7.24 -51.93 -0.38 0.41 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.05 0.29 7.82 -51.93 -0.41 -0.12 16 38 H 0.07 0.29 7.88 -51.93 -0.41 -0.12 16 39 H 0.09 0.36 7.31 -51.93 -0.38 -0.02 16 40 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 0.21 7.22 -51.93 -0.38 -0.17 16 44 H 0.06 0.39 8.00 -51.93 -0.42 -0.03 16 45 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -36.33 381.54 -7.50 -43.83 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.67 Total: -3.41 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 0.36 Total: -3.83 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.21 Total: -43.34 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.33 -7.50 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698556071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.552 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds