Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48505 * 109.46790 * 269.99388 * 3 2 1 5 5 H 1.48499 * 109.47214 * 29.99199 * 3 2 1 6 6 H 1.48502 * 109.47363 * 149.99594 * 3 2 1 7 7 C 1.38810 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00450 * 163.07864 * 7 2 1 9 9 N 1.36946 * 119.99960 * 343.08342 * 7 2 1 10 10 C 1.46924 * 120.62882 * 331.84253 * 9 7 2 11 11 C 1.53193 * 108.77457 * 233.58530 * 10 9 7 12 12 C 1.53035 * 109.31405 * 305.36712 * 11 10 9 13 13 C 1.53000 * 109.46169 * 181.38422 * 12 11 10 14 14 C 1.52996 * 109.47292 * 174.97183 * 13 12 11 15 15 N 1.46507 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.34770 * 119.99830 * 179.97438 * 15 14 13 17 17 O 1.21546 * 120.00400 * 0.02562 * 16 15 14 18 18 C 1.47851 * 119.99424 * 180.02562 * 16 15 14 19 19 C 1.40128 * 120.96076 * 270.00115 * 18 16 15 20 20 F 1.35101 * 120.51838 * 0.25320 * 19 18 16 21 21 C 1.38432 * 118.95535 * 179.97438 * 19 18 16 22 22 N 1.31764 * 120.93234 * 359.97438 * 21 19 18 23 23 C 1.31767 * 122.14246 * 0.02562 * 22 21 19 24 24 C 1.38425 * 120.93119 * 0.02562 * 23 22 21 25 25 F 1.35093 * 120.51952 * 179.97438 * 24 23 22 26 26 C 1.53045 * 109.52895 * 61.37283 * 12 11 10 27 27 C 1.46924 * 120.62766 * 151.82056 * 9 7 2 28 28 H 0.97001 * 119.99623 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58689 * 113.80276 * 10 9 7 30 30 H 1.09005 * 109.70389 * 353.44558 * 10 9 7 31 31 H 1.08995 * 109.49605 * 185.41355 * 11 10 9 32 32 H 1.09000 * 109.49206 * 65.32291 * 11 10 9 33 33 H 1.09000 * 109.45994 * 301.35588 * 12 11 10 34 34 H 1.09005 * 109.47014 * 54.97115 * 13 12 11 35 35 H 1.08999 * 109.47113 * 294.97458 * 13 12 11 36 36 H 1.08998 * 109.46805 * 60.00198 * 14 13 12 37 37 H 1.08999 * 109.47266 * 300.00182 * 14 13 12 38 38 H 0.97000 * 119.99361 * 0.02562 * 15 14 13 39 39 H 1.08000 * 119.53170 * 179.97438 * 21 19 18 40 40 H 1.08004 * 119.52964 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.49671 * 58.57172 * 26 12 11 42 42 H 1.08996 * 109.49813 * 178.67840 * 26 12 11 43 43 H 1.09000 * 109.58837 * 246.19866 * 27 9 7 44 44 H 1.08997 * 109.58886 * 6.48596 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3700 -2.3623 0.3462 10 6 0.2260 -2.3399 1.2677 11 6 0.4972 -3.3191 2.4142 12 6 0.8118 -4.7007 1.8362 13 6 1.0493 -5.6896 2.9793 14 6 1.2398 -7.0953 2.4063 15 7 1.4679 -8.0421 3.5008 16 6 1.6621 -9.3484 3.2323 17 8 1.6485 -9.7411 2.0821 18 6 1.8917 -10.3039 4.3370 19 6 3.1872 -10.5774 4.7960 20 9 4.2557 -9.9667 4.2388 21 6 3.3543 -11.4788 5.8333 22 7 2.3174 -12.0745 6.3866 23 6 1.0826 -11.8471 5.9868 24 6 0.8202 -10.9620 4.9553 25 9 -0.4490 -10.7356 4.5518 26 6 2.0674 -4.6171 0.9652 27 6 1.8139 -3.6529 -0.1980 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6771 -2.6405 0.7365 30 1 0.0966 -1.3346 1.6686 31 1 -0.3834 -3.3840 3.0532 32 1 1.3468 -2.9675 2.9995 33 1 -0.0283 -5.0408 1.2305 34 1 0.1896 -5.6837 3.6493 35 1 1.9426 -5.3983 3.5318 36 1 2.0995 -7.1012 1.7363 37 1 0.3465 -7.3866 1.8537 38 1 1.4784 -7.7287 4.4188 39 1 4.3486 -11.6968 6.1941 40 1 0.2637 -12.3592 6.4702 41 1 2.9021 -4.2531 1.5643 42 1 2.3045 -5.6059 0.5727 43 1 1.0403 -4.0605 -0.8488 44 1 2.7333 -3.5130 -0.7664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698721663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -97.634724 kcal Electronic energy + Delta-G solvation = -28678.430662 eV Core-core repulsion = 24266.199601 eV Total energy + Delta-G solvation = -4412.231061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.38188 -50.35412 -41.56973 -40.51380 -39.52557 -36.86762 -35.23520 -33.97232 -32.97540 -31.96480 -31.60483 -30.12298 -27.33632 -26.10553 -24.80085 -24.56075 -23.62583 -22.31360 -22.11811 -20.67301 -19.60622 -19.40100 -19.15163 -18.72124 -17.82500 -17.19907 -17.11947 -16.84681 -16.80391 -16.66997 -16.52793 -15.78662 -15.51993 -15.32104 -15.29784 -14.91008 -14.86924 -14.84402 -14.41720 -14.37988 -14.05537 -13.89352 -13.36533 -13.04678 -12.96646 -12.89710 -12.55371 -12.33125 -12.20397 -11.99867 -11.88230 -11.82136 -11.50959 -11.22519 -11.06683 -11.02010 -10.95766 -10.53702 -10.35739 -10.18144 -8.67098 -7.87860 -5.33363 -0.71082 -0.52797 1.02425 1.45348 1.46337 1.56563 1.71286 2.12490 2.32315 2.50613 2.72954 3.09395 3.20094 3.26415 3.42424 3.69288 3.71916 3.76226 3.89354 4.08173 4.16820 4.23049 4.25539 4.38001 4.57055 4.59057 4.59742 4.71013 4.74804 4.87143 4.93715 5.01679 5.07194 5.18411 5.21121 5.24129 5.34275 5.38744 5.44992 5.55560 5.66386 5.80305 6.13340 6.37611 6.39249 6.78471 7.15139 7.87167 8.38619 9.18214 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.001968 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.449365 B =14221.319767 C =14585.630509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.174 3.826 11 C -0.120 4.120 12 C -0.070 4.070 13 C -0.108 4.108 14 C 0.120 3.880 15 N -0.697 5.697 16 C 0.559 3.441 17 O -0.559 6.559 18 C -0.167 4.167 19 C 0.103 3.897 20 F -0.119 7.119 21 C 0.087 3.913 22 N -0.425 5.425 23 C 0.087 3.913 24 C 0.104 3.896 25 F -0.118 7.118 26 C -0.118 4.118 27 C 0.137 3.863 28 H 0.250 0.750 29 H -0.008 1.008 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.418 0.582 39 H 0.215 0.785 40 H 0.216 0.784 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.008 0.992 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 -25.298 18.020 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.048 3.952 11 C -0.159 4.159 12 C -0.089 4.089 13 C -0.146 4.146 14 C -0.003 4.003 15 N -0.348 5.348 16 C 0.343 3.657 17 O -0.438 6.438 18 C -0.180 4.180 19 C 0.081 3.919 20 F -0.097 7.097 21 C -0.071 4.071 22 N -0.132 5.132 23 C -0.071 4.071 24 C 0.081 3.919 25 F -0.097 7.097 26 C -0.157 4.157 27 C 0.012 3.988 28 H 0.059 0.941 29 H 0.010 0.990 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.255 0.745 39 H 0.231 0.769 40 H 0.232 0.768 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.026 0.974 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.784 -25.957 17.818 31.711 hybrid contribution -0.123 2.231 -1.275 2.572 sum 3.662 -23.726 16.543 29.155 Atomic orbital electron populations 1.70196 1.06677 1.25824 1.55521 1.25824 0.96086 1.01564 1.01378 0.85279 0.78097 0.79522 0.77566 1.21230 1.21700 1.19504 1.19504 0.92753 0.86173 1.40869 0.91853 1.44351 1.36052 1.02255 1.50915 1.20616 0.87504 0.97800 0.89263 1.22010 1.00912 0.95154 0.97822 1.20880 0.97668 0.94324 0.96049 1.21713 1.03696 0.91180 0.98011 1.21534 1.01746 0.88056 0.88988 1.45920 1.70538 1.06216 1.12149 1.18046 0.76897 0.83054 0.87666 1.90849 1.51650 1.78897 1.22377 1.20590 0.94276 1.03050 1.00080 1.18787 0.81532 0.96140 0.95453 1.91606 1.53024 1.81059 1.84012 1.23528 1.01300 0.91258 0.91035 1.67813 0.98706 1.20928 1.25786 1.23536 0.96403 0.94517 0.92652 1.18770 0.78404 0.98282 0.96394 1.91602 1.35402 1.93128 1.89530 1.21983 0.97703 0.98681 0.97313 1.21074 0.96868 0.86346 0.94503 0.94118 0.99034 0.93036 0.91080 0.92814 0.92102 0.89526 0.90147 0.91465 0.91744 0.74487 0.76859 0.76801 0.92416 0.90749 0.97364 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 11.19 21.65 0.24 -55.96 16 2 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 3 Si 0.97 45.35 29.59 68.60 2.03 47.38 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.26 -14.76 9.58 84.03 0.81 -13.95 16 8 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.61 -31.34 2.99 -699.09 -2.09 -33.43 16 10 C 0.17 8.40 5.30 86.36 0.46 8.86 16 11 C -0.12 -4.22 5.36 30.67 0.16 -4.06 16 12 C -0.07 -2.06 2.15 -10.77 -0.02 -2.08 16 13 C -0.11 -2.23 4.80 30.59 0.15 -2.08 16 14 C 0.12 2.60 5.43 86.38 0.47 3.07 16 15 N -0.70 -13.23 5.55 -465.98 -2.59 -15.82 16 16 C 0.56 13.23 6.74 86.79 0.58 13.81 16 17 O -0.56 -18.26 17.11 -3.86 -0.07 -18.33 16 18 C -0.17 -2.92 5.68 -19.82 -0.11 -3.03 16 19 C 0.10 1.47 7.34 22.78 0.17 1.63 16 20 F -0.12 -2.04 16.92 44.97 0.76 -1.28 16 21 C 0.09 0.77 11.16 84.75 0.95 1.72 16 22 N -0.43 -4.21 10.32 -195.63 -2.02 -6.23 16 23 C 0.09 0.76 11.16 84.75 0.95 1.70 16 24 C 0.10 1.45 7.34 22.77 0.17 1.62 16 25 F -0.12 -1.98 16.91 44.97 0.76 -1.21 16 26 C -0.12 -3.83 5.15 30.68 0.16 -3.67 16 27 C 0.14 5.84 6.52 86.37 0.56 6.40 16 28 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.05 2.83 6.07 -2.38 -0.01 2.81 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.64 6.53 -2.39 -0.02 1.62 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.42 5.35 8.46 -92.71 -0.78 4.56 16 39 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.09 6.50 -2.39 -0.02 2.07 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 Total: -1.00 -74.15 371.61 3.14 -71.01 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.26 Total: 6.54 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.86 Total: 7.33 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -6.46 Total: -111.44 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.07 Total: -18.33 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 1.52 Total: -2.50 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.15 3.14 -71.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698721663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.625 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds