Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00152 * 2 1 4 4 H 1.48501 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47160 * 300.00194 * 3 2 1 6 6 H 1.48500 * 109.46805 * 60.00346 * 3 2 1 7 7 C 1.38816 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00168 * 163.07718 * 7 2 1 9 9 N 1.36942 * 119.99940 * 343.08296 * 7 2 1 10 10 C 1.46925 * 120.62769 * 331.80829 * 9 7 2 11 11 C 1.53195 * 108.77106 * 233.62930 * 10 9 7 12 12 C 1.53041 * 109.31650 * 305.36677 * 11 10 9 13 13 F 1.39895 * 109.45916 * 301.34708 * 12 11 10 14 14 F 1.39895 * 109.46053 * 181.38565 * 12 11 10 15 15 C 1.53039 * 109.53475 * 61.36471 * 12 11 10 16 16 H 1.08998 * 109.52481 * 58.60358 * 15 12 11 17 17 C 1.53006 * 109.49807 * 178.68424 * 15 12 11 18 18 N 1.46494 * 109.47529 * 184.83717 * 17 15 12 19 19 C 1.34768 * 120.00265 * 179.97438 * 18 17 15 20 20 O 1.21785 * 120.00284 * 0.02562 * 19 18 17 21 21 C 1.41525 * 120.00113 * 179.97438 * 19 18 17 22 22 C 1.35612 * 119.99898 * 180.02562 * 21 19 18 23 23 C 1.41678 * 120.00193 * 180.02562 * 22 21 19 24 24 C 1.38281 * 126.26135 * 180.19421 * 23 22 21 25 25 C 1.39787 * 107.07595 * 180.25541 * 24 23 22 26 26 C 1.35505 * 107.90901 * 359.73751 * 25 24 23 27 27 N 1.35750 * 108.91412 * 359.97438 * 26 25 24 28 28 H 0.96993 * 125.69479 * 180.02562 * 27 26 25 29 29 C 1.46926 * 120.62859 * 151.83159 * 9 7 2 30 30 H 0.97001 * 120.00097 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.58686 * 353.41846 * 10 9 7 32 32 H 1.08995 * 109.58396 * 113.84479 * 10 9 7 33 33 H 1.09004 * 109.49947 * 65.32190 * 11 10 9 34 34 H 1.08995 * 109.49625 * 185.41451 * 11 10 9 35 35 H 1.08999 * 109.46903 * 64.83810 * 17 15 12 36 36 H 1.09003 * 109.46934 * 304.83830 * 17 15 12 37 37 H 0.97007 * 119.99521 * 0.02562 * 18 17 15 38 38 H 1.07991 * 119.99843 * 0.02562 * 21 19 18 39 39 H 1.08007 * 120.00410 * 0.02562 * 22 21 19 40 40 H 1.07996 * 126.46264 * 359.96911 * 24 23 22 41 41 H 1.07999 * 126.04416 * 179.71772 * 25 24 23 42 42 H 1.08004 * 125.54058 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.59003 * 6.57897 * 29 9 7 44 44 H 1.09004 * 109.58364 * 246.15521 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3699 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2683 11 6 0.4985 -3.3187 2.4150 12 6 0.8132 -4.7005 1.8372 13 9 -0.2653 -5.1377 1.0609 14 9 1.0313 -5.6042 2.8826 15 6 2.0682 -4.6169 0.9653 16 1 2.9036 -4.2530 1.5634 17 6 2.4008 -6.0051 0.4146 18 7 3.6646 -5.9475 -0.3241 19 6 4.1593 -7.0606 -0.9009 20 8 3.5555 -8.1142 -0.8085 21 6 5.3799 -7.0048 -1.6150 22 6 5.8774 -8.1247 -2.1959 23 6 7.0996 -8.0690 -2.9103 24 6 7.7202 -9.1246 -3.5528 25 6 8.8970 -8.6260 -4.1188 26 6 8.9730 -7.3050 -3.8262 27 7 7.8844 -6.9529 -3.0956 28 1 7.6935 -6.0643 -2.7568 29 6 1.8138 -3.6530 -0.1978 30 1 -0.4850 0.8400 0.0004 31 1 0.0994 -1.3342 1.6687 32 1 -0.6769 -2.6410 0.7376 33 1 1.3484 -2.9667 2.9998 34 1 -0.3817 -3.3837 3.0545 35 1 1.6039 -6.3314 -0.2536 36 1 2.4944 -6.7106 1.2403 37 1 4.1457 -5.1084 -0.3974 38 1 5.9150 -6.0704 -1.6974 39 1 5.3419 -9.0591 -2.1139 40 1 7.3652 -10.1433 -3.6034 41 1 9.6183 -9.1932 -4.6883 42 1 9.7696 -6.6403 -4.1263 43 1 2.7343 -3.5135 -0.7647 44 1 1.0400 -4.0610 -0.8480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699889471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = -56.595022 kcal Electronic energy + Delta-G solvation = -29124.781777 eV Core-core repulsion = 24714.330332 eV Total energy + Delta-G solvation = -4410.451446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.53187 -46.48291 -41.42527 -39.76422 -37.41577 -35.06484 -33.97948 -32.71555 -31.40500 -30.97422 -30.26366 -28.74885 -25.92023 -25.21408 -23.65338 -22.40090 -21.48901 -21.08695 -20.59142 -19.91797 -19.46538 -17.98289 -17.41065 -16.80937 -16.75265 -16.25095 -15.51469 -15.39611 -15.30746 -14.86117 -14.60147 -14.23953 -14.18264 -14.07900 -13.80387 -13.58375 -13.27031 -13.11568 -12.85011 -12.79461 -12.70902 -12.49526 -12.27463 -12.19982 -11.69762 -11.61244 -11.56906 -11.27100 -10.88046 -10.65158 -10.54542 -10.52110 -10.11525 -10.02779 -9.92903 -9.66441 -9.31445 -8.99124 -8.65481 -7.95177 -6.93059 -5.97482 -3.42534 0.45306 2.22731 2.73142 2.88274 3.25878 3.28340 3.33992 3.35775 3.47507 4.21019 4.33977 4.59704 4.66966 4.68473 4.73112 4.83465 4.89254 5.00858 5.11230 5.18263 5.24890 5.28238 5.40626 5.52776 5.61568 5.64235 5.77993 5.91718 5.96696 6.02530 6.08217 6.14551 6.24746 6.30826 6.41289 6.46335 6.56613 6.67618 6.67789 7.07559 7.12289 7.42130 7.56419 7.61395 8.23184 8.28348 8.99124 9.61595 10.17295 11.11629 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.002762 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.651189 B =10135.898665 C =12360.335701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.261 4.261 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.300 3.700 13 F -0.199 7.199 14 F -0.213 7.213 15 C -0.155 4.155 16 H 0.101 0.899 17 C 0.125 3.875 18 N -0.720 5.720 19 C 0.551 3.449 20 O -0.553 6.553 21 C -0.243 4.243 22 C 0.026 3.974 23 C 0.004 3.996 24 C -0.143 4.143 25 C -0.209 4.209 26 C 0.014 3.986 27 N -0.543 5.543 28 H 0.418 0.582 29 C 0.153 3.847 30 H 0.256 0.744 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.403 0.597 38 H 0.116 0.884 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.168 0.832 43 H 0.065 0.935 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.187 -12.156 -2.983 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.391 4.391 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.180 7.180 14 F -0.194 7.194 15 C -0.177 4.177 16 H 0.119 0.881 17 C 0.001 3.999 18 N -0.371 5.371 19 C 0.342 3.658 20 O -0.434 6.434 21 C -0.265 4.265 22 C 0.005 3.995 23 C -0.106 4.106 24 C -0.168 4.168 25 C -0.233 4.233 26 C -0.121 4.121 27 N -0.138 5.138 28 H 0.256 0.744 29 C 0.026 3.974 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.237 0.763 38 H 0.134 0.866 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.186 0.814 43 H 0.083 0.917 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.557 -12.594 -2.857 18.723 hybrid contribution 0.494 1.689 0.197 1.771 sum 14.051 -10.904 -2.660 17.984 Atomic orbital electron populations 1.70024 1.05330 1.25829 1.52954 1.25100 0.95321 0.98638 1.00237 0.86197 0.79280 0.83656 0.77423 1.20203 1.21578 1.21401 1.19176 0.92608 0.84437 1.42840 0.91347 1.44100 1.35791 1.01491 1.49858 1.20840 0.89385 0.98107 0.87269 1.23271 1.03355 0.92988 1.02247 1.21021 0.84880 0.87472 0.80270 1.92966 1.58087 1.91104 1.75838 1.92955 1.95164 1.71231 1.60089 1.22966 0.97084 0.97014 1.00592 0.88090 1.21301 0.85994 0.96276 0.96324 1.45867 1.24594 1.11855 1.54778 1.16896 0.85677 0.83758 0.79448 1.90835 1.61571 1.29513 1.61520 1.21739 0.99103 0.99386 1.06226 1.20842 0.90204 0.99414 0.89000 1.18315 0.96088 0.87451 1.08709 1.21547 0.96255 0.98185 1.00859 1.20901 1.00414 0.94343 1.07668 1.22090 0.92453 0.97407 1.00137 1.42224 1.18633 1.10670 1.42260 0.74412 1.20908 0.98883 0.86290 0.91297 0.93341 0.88157 0.94929 0.89599 0.90529 0.90671 0.91052 0.76257 0.86645 0.83188 0.83765 0.84188 0.81427 0.91698 0.94927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.64 11.20 55.49 0.62 -24.02 16 2 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 3 Si 0.91 20.30 29.59 -169.99 -5.03 15.27 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.57 9.58 -15.06 -0.14 -6.72 16 8 H 0.07 1.66 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -13.58 2.99 -172.32 -0.52 -14.10 16 10 C 0.17 3.80 5.10 -3.71 -0.02 3.78 16 11 C -0.18 -3.26 5.62 -26.61 -0.15 -3.41 16 12 C 0.30 5.34 1.63 -26.69 -0.04 5.29 16 13 F -0.20 -3.84 15.73 2.25 0.04 -3.81 16 14 F -0.21 -3.71 16.41 2.25 0.04 -3.68 16 15 C -0.16 -2.54 2.03 -90.50 -0.18 -2.72 16 16 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 17 C 0.13 1.93 4.83 -4.04 -0.02 1.91 16 18 N -0.72 -9.57 5.32 -63.25 -0.34 -9.91 16 19 C 0.55 7.77 7.56 -15.01 -0.11 7.65 16 20 O -0.55 -9.79 16.11 5.11 0.08 -9.70 16 21 C -0.24 -2.59 9.39 -39.27 -0.37 -2.96 16 22 C 0.03 0.27 9.40 -39.21 -0.37 -0.10 16 23 C 0.00 0.04 6.74 -83.90 -0.57 -0.52 16 24 C -0.14 -1.25 10.86 -38.99 -0.42 -1.68 16 25 C -0.21 -1.60 10.81 -39.98 -0.43 -2.03 16 26 C 0.01 0.10 11.90 -16.79 -0.20 -0.10 16 27 N -0.54 -4.01 5.94 -10.56 -0.06 -4.07 16 28 H 0.42 2.21 7.87 -40.82 -0.32 1.88 16 29 C 0.15 2.93 5.40 -3.71 -0.02 2.91 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.10 2.48 6.06 -51.93 -0.31 2.17 16 32 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.27 7.97 -51.93 -0.41 0.85 16 36 H 0.07 1.14 7.63 -51.93 -0.40 0.74 16 37 H 0.40 4.51 7.65 -40.82 -0.31 4.19 16 38 H 0.12 0.92 6.93 -52.49 -0.36 0.55 16 39 H 0.15 1.58 7.46 -52.48 -0.39 1.19 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.06 1.14 7.13 -51.93 -0.37 0.77 16 44 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -31.49 369.71 -8.53 -40.02 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.79 Total: 7.04 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.14 Total: 1.39 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.29 Total: -52.10 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.49 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.49 -8.53 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699889471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.579 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds