Wall clock time and date at job start Sat Apr 11 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00152 * 2 1 4 4 H 1.48501 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47160 * 300.00194 * 3 2 1 6 6 H 1.48500 * 109.46805 * 60.00346 * 3 2 1 7 7 C 1.38816 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00168 * 163.07718 * 7 2 1 9 9 N 1.36942 * 119.99940 * 343.08296 * 7 2 1 10 10 C 1.46925 * 120.62769 * 331.80829 * 9 7 2 11 11 C 1.53195 * 108.77106 * 233.62930 * 10 9 7 12 12 C 1.53041 * 109.31650 * 305.36677 * 11 10 9 13 13 F 1.39895 * 109.45916 * 301.34708 * 12 11 10 14 14 F 1.39895 * 109.46053 * 181.38565 * 12 11 10 15 15 C 1.53039 * 109.53475 * 61.36471 * 12 11 10 16 16 H 1.08998 * 109.52481 * 58.60358 * 15 12 11 17 17 C 1.53006 * 109.49807 * 178.68424 * 15 12 11 18 18 N 1.46494 * 109.47529 * 184.83717 * 17 15 12 19 19 C 1.34768 * 120.00265 * 179.97438 * 18 17 15 20 20 O 1.21785 * 120.00284 * 0.02562 * 19 18 17 21 21 C 1.41525 * 120.00113 * 179.97438 * 19 18 17 22 22 C 1.35612 * 119.99898 * 180.02562 * 21 19 18 23 23 C 1.41678 * 120.00193 * 180.02562 * 22 21 19 24 24 C 1.38281 * 126.26135 * 180.19421 * 23 22 21 25 25 C 1.39787 * 107.07595 * 180.25541 * 24 23 22 26 26 C 1.35505 * 107.90901 * 359.73751 * 25 24 23 27 27 N 1.35750 * 108.91412 * 359.97438 * 26 25 24 28 28 H 0.96993 * 125.69479 * 180.02562 * 27 26 25 29 29 C 1.46926 * 120.62859 * 151.83159 * 9 7 2 30 30 H 0.97001 * 120.00097 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.58686 * 353.41846 * 10 9 7 32 32 H 1.08995 * 109.58396 * 113.84479 * 10 9 7 33 33 H 1.09004 * 109.49947 * 65.32190 * 11 10 9 34 34 H 1.08995 * 109.49625 * 185.41451 * 11 10 9 35 35 H 1.08999 * 109.46903 * 64.83810 * 17 15 12 36 36 H 1.09003 * 109.46934 * 304.83830 * 17 15 12 37 37 H 0.97007 * 119.99521 * 0.02562 * 18 17 15 38 38 H 1.07991 * 119.99843 * 0.02562 * 21 19 18 39 39 H 1.08007 * 120.00410 * 0.02562 * 22 21 19 40 40 H 1.07996 * 126.46264 * 359.96911 * 24 23 22 41 41 H 1.07999 * 126.04416 * 179.71772 * 25 24 23 42 42 H 1.08004 * 125.54058 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.59003 * 6.57897 * 29 9 7 44 44 H 1.09004 * 109.58364 * 246.15521 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3699 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2683 11 6 0.4985 -3.3187 2.4150 12 6 0.8132 -4.7005 1.8372 13 9 -0.2653 -5.1377 1.0609 14 9 1.0313 -5.6042 2.8826 15 6 2.0682 -4.6169 0.9653 16 1 2.9036 -4.2530 1.5634 17 6 2.4008 -6.0051 0.4146 18 7 3.6646 -5.9475 -0.3241 19 6 4.1593 -7.0606 -0.9009 20 8 3.5555 -8.1142 -0.8085 21 6 5.3799 -7.0048 -1.6150 22 6 5.8774 -8.1247 -2.1959 23 6 7.0996 -8.0690 -2.9103 24 6 7.7202 -9.1246 -3.5528 25 6 8.8970 -8.6260 -4.1188 26 6 8.9730 -7.3050 -3.8262 27 7 7.8844 -6.9529 -3.0956 28 1 7.6935 -6.0643 -2.7568 29 6 1.8138 -3.6530 -0.1978 30 1 -0.4850 0.8400 0.0004 31 1 0.0994 -1.3342 1.6687 32 1 -0.6769 -2.6410 0.7376 33 1 1.3484 -2.9667 2.9998 34 1 -0.3817 -3.3837 3.0545 35 1 1.6039 -6.3314 -0.2536 36 1 2.4944 -6.7106 1.2403 37 1 4.1457 -5.1084 -0.3974 38 1 5.9150 -6.0704 -1.6974 39 1 5.3419 -9.0591 -2.1139 40 1 7.3652 -10.1433 -3.6034 41 1 9.6183 -9.1932 -4.6883 42 1 9.7696 -6.6403 -4.1263 43 1 2.7343 -3.5135 -0.7647 44 1 1.0400 -4.0610 -0.8480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699889471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:39 Heat of formation + Delta-G solvation = -75.692209 kcal Electronic energy + Delta-G solvation = -29125.609893 eV Core-core repulsion = 24714.330332 eV Total energy + Delta-G solvation = -4411.279562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.00518 -47.96160 -42.02503 -40.87526 -38.98431 -36.43786 -34.82659 -34.38284 -32.41620 -32.00455 -31.98116 -29.55111 -27.31101 -26.89859 -24.70133 -23.94365 -22.88005 -21.90719 -21.28860 -21.17179 -20.61751 -18.98329 -18.73206 -18.31595 -17.90767 -17.55809 -17.00467 -16.93987 -16.52456 -16.37523 -15.63334 -15.44658 -15.18624 -15.17211 -14.83271 -14.80201 -14.64961 -14.46999 -14.30328 -14.26308 -13.82000 -13.31881 -13.26765 -13.20852 -13.18442 -13.07322 -13.03871 -12.91008 -12.61939 -12.26908 -12.17000 -11.92102 -11.64093 -11.38321 -11.30955 -11.04117 -10.59140 -10.16625 -9.89173 -8.81443 -8.61129 -7.91603 -5.38923 -0.33543 1.49213 1.52349 1.56525 1.61583 2.03262 2.16067 2.36082 2.48833 2.55425 2.80995 3.16028 3.22432 3.29238 3.51024 3.58176 3.88353 3.91490 4.01622 4.09008 4.23889 4.38062 4.44274 4.45029 4.49452 4.53589 4.55590 4.66523 4.75642 4.83115 4.87844 4.96530 5.08411 5.14070 5.27621 5.33369 5.37428 5.40273 5.57765 5.65434 5.94810 6.07419 6.33001 6.54239 6.63786 7.07390 7.22881 7.74939 8.28149 9.16727 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.002762 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.651189 B =10135.898665 C =12360.335701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.168 4.168 12 C 0.298 3.702 13 F -0.210 7.210 14 F -0.207 7.207 15 C -0.137 4.137 16 H 0.119 0.881 17 C 0.136 3.864 18 N -0.712 5.712 19 C 0.550 3.450 20 O -0.599 6.599 21 C -0.260 4.260 22 C 0.043 3.957 23 C -0.025 4.025 24 C -0.150 4.150 25 C -0.229 4.229 26 C 0.031 3.969 27 N -0.539 5.539 28 H 0.428 0.572 29 C 0.156 3.844 30 H 0.251 0.749 31 H 0.074 0.926 32 H 0.003 0.997 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.415 0.585 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.203 0.797 43 H 0.083 0.917 44 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.398 -12.007 -3.185 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.225 1.225 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.051 3.949 11 C -0.208 4.208 12 C 0.262 3.738 13 F -0.192 7.192 14 F -0.188 7.188 15 C -0.159 4.159 16 H 0.138 0.862 17 C 0.011 3.989 18 N -0.364 5.364 19 C 0.343 3.657 20 O -0.483 6.483 21 C -0.282 4.282 22 C 0.022 3.978 23 C -0.134 4.134 24 C -0.175 4.175 25 C -0.253 4.253 26 C -0.106 4.106 27 N -0.134 5.134 28 H 0.268 0.732 29 C 0.029 3.971 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.021 0.979 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.252 0.748 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.169 0.831 41 H 0.174 0.826 42 H 0.220 0.780 43 H 0.101 0.899 44 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 16.796 -12.439 -3.048 21.122 hybrid contribution -0.415 1.528 0.152 1.590 sum 16.381 -10.912 -2.896 19.894 Atomic orbital electron populations 1.70180 1.06865 1.26047 1.54995 1.25854 0.95954 1.01716 1.00845 0.85192 0.78940 0.79697 0.76465 1.18392 1.22476 1.21967 1.19591 0.93210 0.85126 1.41271 0.90126 1.44334 1.35647 1.02365 1.50437 1.20562 0.88468 0.97687 0.88174 1.23099 1.04750 0.92128 1.00787 1.21084 0.85098 0.87184 0.80478 1.92951 1.58815 1.91202 1.76194 1.92966 1.95102 1.70936 1.59803 1.22766 0.96945 0.96730 0.99417 0.86247 1.21040 0.86548 0.95309 0.95993 1.45741 1.23818 1.12451 1.54359 1.17390 0.86289 0.83024 0.79003 1.90811 1.63063 1.31085 1.63357 1.21647 0.98344 1.00899 1.07293 1.20828 0.90240 0.98853 0.87891 1.18243 0.96451 0.88565 1.10189 1.21884 0.96699 0.98644 1.00323 1.21241 1.00517 0.95199 1.08316 1.22727 0.92269 0.97623 0.97966 1.42289 1.18427 1.10737 1.41992 0.73226 1.20956 0.98903 0.85059 0.92143 0.93978 0.90731 0.97858 0.88135 0.89002 0.92499 0.91323 0.74778 0.83762 0.84360 0.83144 0.82571 0.78026 0.89870 0.96833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.48 11.20 21.65 0.24 -52.23 16 2 C -0.05 -2.48 4.92 84.86 0.42 -2.06 16 3 Si 0.97 41.52 29.59 68.60 2.03 43.55 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.30 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.26 -12.95 9.58 84.03 0.81 -12.15 16 8 H 0.08 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.61 -27.62 2.99 -699.10 -2.09 -29.72 16 10 C 0.18 8.04 5.10 86.36 0.44 8.48 16 11 C -0.17 -5.97 5.62 30.67 0.17 -5.80 16 12 C 0.30 10.29 1.63 30.62 0.05 10.34 16 13 F -0.21 -8.16 15.73 44.97 0.71 -7.45 16 14 F -0.21 -6.86 16.41 44.97 0.74 -6.12 16 15 C -0.14 -4.30 2.03 -10.71 -0.02 -4.32 16 16 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 17 C 0.14 4.09 4.83 86.38 0.42 4.51 16 18 N -0.71 -18.03 5.32 -472.21 -2.51 -20.54 16 19 C 0.55 15.20 7.56 85.05 0.64 15.84 16 20 O -0.60 -21.52 16.11 -4.62 -0.07 -21.60 16 21 C -0.26 -5.24 9.39 22.47 0.21 -5.03 16 22 C 0.04 0.84 9.40 22.51 0.21 1.06 16 23 C -0.02 -0.42 6.74 39.08 0.26 -0.16 16 24 C -0.15 -2.41 10.86 22.66 0.25 -2.16 16 25 C -0.23 -2.93 10.81 22.01 0.24 -2.69 16 26 C 0.03 0.31 11.90 83.45 0.99 1.30 16 27 N -0.54 -6.47 5.94 -187.32 -1.11 -7.58 16 28 H 0.43 3.19 7.87 -92.71 -0.73 2.46 16 29 C 0.16 5.80 5.40 86.36 0.47 6.27 16 30 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.07 3.78 6.06 -2.39 -0.01 3.77 16 32 H 0.00 0.17 7.92 -2.39 -0.02 0.15 16 33 H 0.10 3.30 8.14 -2.38 -0.02 3.29 16 34 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.06 1.93 7.97 -2.39 -0.02 1.91 16 36 H 0.07 2.14 7.63 -2.39 -0.02 2.12 16 37 H 0.41 8.33 7.65 -92.70 -0.71 7.62 16 38 H 0.14 1.94 6.93 -2.92 -0.02 1.92 16 39 H 0.14 3.00 7.46 -2.91 -0.02 2.98 16 40 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.20 0.53 8.06 -2.91 -0.02 0.50 16 43 H 0.08 2.77 7.13 -2.39 -0.02 2.75 16 44 H 0.01 0.57 7.92 -2.38 -0.02 0.55 16 Total: -1.00 -68.91 369.71 3.09 -65.82 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.39 Total: 22.44 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.55 Total: 13.43 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -5.47 Total: -110.07 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.07 Total: -21.60 kcal Atomic # 9 Polarization: -15.01 SS G_CDS: 1.45 Total: -13.57 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -68.91 3.09 -65.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699889471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.873 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds