Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28714 * 125.86438 * 2 1 4 4 N 1.28637 * 110.18046 * 180.02562 * 3 2 1 5 5 C 1.33775 * 108.88137 * 359.97438 * 4 3 2 6 6 C 1.35309 * 125.87027 * 180.02562 * 2 1 3 7 7 C 1.50695 * 126.91358 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.47563 * 275.00451 * 7 6 2 9 9 C 1.46900 * 111.00105 * 179.97438 * 8 7 6 10 10 C 1.53777 * 113.61625 * 254.13347 * 9 8 7 11 11 C 1.53952 * 87.01995 * 220.04877 * 10 9 8 12 12 C 1.53004 * 113.66275 * 139.93191 * 11 10 9 13 13 N 1.46495 * 109.47249 * 87.44085 * 12 11 10 14 14 C 1.34777 * 120.00371 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99471 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00399 * 180.02562 * 14 13 12 17 17 S 1.80996 * 109.47214 * 180.02562 * 16 14 13 18 18 C 1.76194 * 99.99865 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00466 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99835 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00026 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99798 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47157 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47072 * 120.00273 * 22 20 18 25 25 H 1.48501 * 109.46884 * 239.99827 * 22 20 18 26 26 C 1.53780 * 87.11207 * 25.36344 * 11 10 9 27 27 H 1.08993 * 109.47446 * 89.97585 * 1 2 3 28 28 H 1.09008 * 109.46941 * 209.97793 * 1 2 3 29 29 H 1.08996 * 109.47238 * 329.97421 * 1 2 3 30 30 H 1.08002 * 126.74943 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46843 * 35.00491 * 7 6 2 32 32 H 1.08995 * 109.47407 * 154.99890 * 7 6 2 33 33 H 1.00905 * 110.99099 * 303.94955 * 8 7 6 34 34 H 1.09003 * 112.84781 * 25.33581 * 9 8 7 35 35 H 1.09003 * 113.61116 * 334.57018 * 10 9 8 36 36 H 1.08999 * 113.61311 * 105.46916 * 10 9 8 37 37 H 1.08993 * 113.61640 * 270.79657 * 11 10 9 38 38 H 1.09005 * 109.46676 * 207.44063 * 12 11 10 39 39 H 1.09003 * 109.47357 * 327.43644 * 12 11 10 40 40 H 0.97002 * 120.00080 * 0.02562 * 13 12 11 41 41 H 1.08998 * 109.46617 * 300.00336 * 16 14 13 42 42 H 1.09001 * 109.46556 * 60.00423 * 16 14 13 43 43 H 0.97001 * 119.99735 * 179.97438 * 21 20 18 44 44 H 1.08997 * 113.61394 * 220.09167 * 26 11 10 45 45 H 1.09005 * 113.61555 * 89.18586 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0431 0.0000 4 7 3.4576 0.6954 -0.0005 5 6 3.5322 -0.6403 -0.0004 6 6 2.2578 -1.0965 -0.0005 7 6 1.8118 -2.5359 -0.0017 8 7 1.5509 -2.9690 1.3776 9 6 1.1124 -4.3705 1.4154 10 6 -0.3900 -4.5385 1.6966 11 6 -0.0071 -5.7309 2.5921 12 6 -0.8192 -5.8126 3.8862 13 7 -2.0495 -6.5700 3.6437 14 6 -2.9258 -6.7717 4.6476 15 8 -2.6959 -6.3257 5.7518 16 6 -4.1911 -7.5513 4.3983 17 16 -5.1519 -7.6479 5.9292 18 6 -6.5335 -8.5843 5.3647 19 1 -6.5824 -8.9079 4.3355 20 6 -7.5592 -8.9060 6.2428 21 7 -7.4994 -8.5121 7.4973 22 14 -9.0244 -9.8982 5.6441 23 1 -8.8524 -10.2151 4.2036 24 1 -9.1186 -11.1600 6.4213 25 1 -10.2674 -9.1075 5.8315 26 6 1.3649 -5.0587 2.7672 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3633 -0.8903 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 4.4322 -1.2372 -0.0011 31 1 0.9004 -2.6333 -0.5916 32 1 2.5940 -3.1583 -0.4361 33 1 2.3625 -2.8278 1.9604 34 1 1.4637 -4.9471 0.5596 35 1 -0.8277 -3.7039 2.2443 36 1 -0.9699 -4.8199 0.8176 37 1 0.0368 -6.6807 2.0593 38 1 -0.2296 -6.3135 4.6541 39 1 -1.0719 -4.8065 4.2208 40 1 -2.2332 -6.9270 2.7606 41 1 -4.7809 -7.0506 3.6305 42 1 -3.9380 -8.5573 4.0637 43 1 -8.2164 -8.7367 8.1109 44 1 2.1996 -5.7594 2.7513 45 1 1.4078 -4.3665 3.6083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707286170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = 81.103878 kcal Electronic energy + Delta-G solvation = -25303.473182 eV Core-core repulsion = 21485.125947 eV Total energy + Delta-G solvation = -3818.347235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.66895 -40.05274 -38.82921 -35.96921 -34.92759 -33.98697 -32.44399 -31.46795 -29.80136 -28.40935 -27.28004 -26.26988 -25.61011 -25.32488 -22.98471 -21.98165 -21.29826 -20.56027 -19.70271 -17.87150 -17.75848 -17.13333 -16.61617 -16.29267 -16.12314 -15.62668 -15.30280 -15.20764 -14.82320 -14.78839 -14.60472 -13.93594 -13.75600 -13.73481 -13.45206 -13.26621 -13.03596 -12.81638 -12.61207 -12.49769 -12.11298 -12.05399 -11.75741 -11.33045 -11.17777 -11.08653 -11.04127 -11.03124 -10.75710 -10.67001 -10.49248 -9.81963 -9.69530 -9.39819 -9.11016 -9.09259 -8.87146 -8.24424 -6.51489 -6.23387 -3.93869 1.09955 1.95332 2.14611 3.02437 3.09784 3.20004 3.26823 3.31224 3.54491 3.69915 3.82729 4.03152 4.11944 4.18761 4.26805 4.37641 4.38309 4.49222 4.51641 4.53897 4.75115 4.87145 4.91573 5.00041 5.04075 5.11891 5.17492 5.33562 5.35831 5.39404 5.50846 5.54544 5.61512 5.70969 5.79274 5.82060 5.88843 5.98921 6.11435 6.12266 6.42963 6.62922 6.67967 7.58212 7.70721 8.09822 8.33746 8.61412 9.22075 10.84096 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023631 B = 0.001528 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.581377 B =18324.128278 C =18814.034358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.276 5.276 3 N -0.086 5.086 4 N -0.272 5.272 5 C -0.047 4.047 6 C -0.016 4.016 7 C 0.130 3.870 8 N -0.676 5.676 9 C 0.058 3.942 10 C -0.120 4.120 11 C -0.122 4.122 12 C 0.134 3.866 13 N -0.738 5.738 14 C 0.530 3.470 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.131 4.131 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.187 0.813 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.349 0.651 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.071 0.929 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.368 10.066 -19.614 30.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.070 5.070 3 N -0.066 5.066 4 N -0.137 5.137 5 C -0.205 4.205 6 C -0.149 4.149 7 C -0.001 4.001 8 N -0.308 5.308 9 C -0.052 4.052 10 C -0.159 4.159 11 C -0.141 4.141 12 C 0.010 3.990 13 N -0.392 5.392 14 C 0.316 3.684 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.169 4.169 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.204 0.796 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.168 0.832 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.046 12.653 -17.576 29.510 hybrid contribution -0.638 -2.960 -2.284 3.793 sum 19.409 9.693 -19.860 29.412 Atomic orbital electron populations 1.22355 0.72427 1.06706 1.04899 1.47203 1.09538 1.04342 1.45933 1.78348 0.96624 1.11816 1.19799 1.75115 1.09670 1.12403 1.16529 1.23408 0.97064 0.92178 1.07891 1.22063 0.91116 0.91681 1.10019 1.20368 1.01131 0.86866 0.91687 1.60655 1.40914 1.20502 1.08762 1.23059 0.97394 0.87070 0.97651 1.23212 0.95224 0.97901 0.99537 1.22650 0.96049 0.98715 0.96701 1.21235 0.85006 0.96759 0.96050 1.45988 1.21866 1.57967 1.13422 1.20312 0.84227 0.79665 0.84166 1.90705 1.76083 1.49232 1.23272 1.23528 0.97214 1.01880 1.07772 1.85411 1.19688 1.71630 1.06729 1.22911 1.06646 1.39683 0.99136 0.90884 1.24997 0.98154 0.95891 0.94555 1.70030 1.32966 1.43691 1.03569 0.86117 0.81166 0.79406 0.78798 1.19636 1.20557 1.20564 1.23179 0.96949 0.99418 0.97377 0.89177 0.87372 0.87933 0.79568 0.89450 0.91887 0.83179 0.90550 0.88896 0.91530 0.88562 0.91664 0.91451 0.76921 0.89281 0.89284 0.92228 0.90999 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.14 59.85 0.67 0.97 16 2 N -0.28 -2.09 3.74 -63.79 -0.24 -2.33 16 3 N -0.09 -0.93 13.16 60.35 0.79 -0.14 16 4 N -0.27 -3.04 12.41 30.24 0.38 -2.66 16 5 C -0.05 -0.36 11.99 -17.73 -0.21 -0.57 16 6 C -0.02 -0.10 6.51 -82.09 -0.53 -0.63 16 7 C 0.13 0.49 5.55 -4.98 -0.03 0.46 16 8 N -0.68 -2.98 6.54 -107.13 -0.70 -3.68 16 9 C 0.06 0.25 4.12 -66.90 -0.28 -0.03 16 10 C -0.12 -0.68 7.45 -25.83 -0.19 -0.87 16 11 C -0.12 -0.77 3.75 -89.72 -0.34 -1.11 16 12 C 0.13 1.39 5.51 -4.04 -0.02 1.37 16 13 N -0.74 -9.11 5.56 -60.29 -0.33 -9.44 16 14 C 0.53 9.62 7.85 -10.99 -0.09 9.53 16 15 O -0.52 -11.66 15.86 5.55 0.09 -11.58 16 16 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 22 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.13 -0.67 7.23 -25.92 -0.19 -0.85 16 27 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.11 0.33 7.83 -51.92 -0.41 -0.08 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.19 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.09 0.29 8.04 -51.93 -0.42 -0.13 16 32 H 0.06 0.16 8.13 -51.93 -0.42 -0.26 16 33 H 0.35 1.54 8.56 -39.29 -0.34 1.20 16 34 H 0.08 0.27 7.88 -51.93 -0.41 -0.14 16 35 H 0.09 0.67 7.90 -51.93 -0.41 0.26 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 40 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -37.39 396.26 -8.26 -45.66 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.93 Total: -1.45 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.79 Total: -7.38 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.63 Total: -43.52 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.39 -8.26 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707286170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.759 kcal (2) G-P(sol) polarization free energy of solvation -37.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds