Wall clock time and date at job start Sat Apr 11 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35323 * 125.86734 * 2 1 4 4 C 1.35351 * 106.17476 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.75428 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.47271 * 94.99820 * 5 4 3 7 7 C 1.46853 * 110.99847 * 293.95920 * 6 5 4 8 8 C 1.53033 * 109.52330 * 185.83780 * 7 6 5 9 9 C 1.53115 * 109.27835 * 300.82091 * 8 7 6 10 10 C 1.53120 * 109.16354 * 57.65492 * 9 8 7 11 11 H 1.08994 * 109.50558 * 62.32438 * 10 9 8 12 12 N 1.46495 * 109.50624 * 182.40558 * 10 9 8 13 13 C 1.34779 * 120.00259 * 274.99547 * 12 10 9 14 14 O 1.21278 * 119.99541 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00194 * 179.97438 * 13 12 10 16 16 S 1.80999 * 109.47143 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00238 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99622 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00168 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99820 * 180.27733 * 19 17 16 21 21 Si 1.86800 * 119.99759 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 90.00172 * 21 19 17 23 23 H 1.48499 * 109.47026 * 210.00020 * 21 19 17 24 24 H 1.48496 * 109.47474 * 330.00056 * 21 19 17 25 25 C 1.46845 * 110.99789 * 58.16547 * 6 5 4 26 26 N 1.33774 * 106.49661 * 0.25860 * 4 3 2 27 27 N 1.28635 * 108.88826 * 359.57040 * 26 4 3 28 28 H 1.08993 * 109.47404 * 89.99818 * 1 2 3 29 29 H 1.09004 * 109.47216 * 210.00009 * 1 2 3 30 30 H 1.09004 * 109.47342 * 329.99398 * 1 2 3 31 31 H 1.07997 * 126.91038 * 359.95125 * 3 2 1 32 32 H 1.09003 * 109.46629 * 335.00103 * 5 4 3 33 33 H 1.08989 * 109.47299 * 215.00352 * 5 4 3 34 34 H 1.08996 * 109.46214 * 65.82197 * 7 6 5 35 35 H 1.09005 * 109.46244 * 305.85386 * 7 6 5 36 36 H 1.08997 * 109.50652 * 180.87858 * 8 7 6 37 37 H 1.09008 * 109.53786 * 60.77791 * 8 7 6 38 38 H 1.08996 * 109.52419 * 297.74490 * 9 8 7 39 39 H 1.09001 * 109.57861 * 177.58654 * 9 8 7 40 40 H 0.97010 * 120.00097 * 94.99497 * 12 10 9 41 41 H 1.08998 * 109.47229 * 59.99906 * 15 13 12 42 42 H 1.09001 * 109.47211 * 300.00298 * 15 13 12 43 43 H 0.97004 * 119.99711 * 179.72642 * 20 19 17 44 44 H 1.08994 * 109.46299 * 54.14680 * 25 6 5 45 45 H 1.09004 * 109.46495 * 294.17763 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6405 0.0006 5 6 4.7880 1.4735 0.0014 6 7 5.2621 1.6433 1.3814 7 6 4.3135 2.4407 2.1693 8 6 4.9053 2.7197 3.5527 9 6 5.1923 1.3908 4.2571 10 6 6.1444 0.5593 3.3930 11 1 7.0915 1.0874 3.2835 12 7 6.3788 -0.7377 4.0326 13 6 7.3341 -0.8614 4.9753 14 8 7.9993 0.1012 5.2944 15 6 7.5749 -2.1954 5.6336 16 16 8.9100 -2.0379 6.8455 17 6 8.9778 -3.6941 7.4431 18 1 8.3040 -4.4392 7.0466 19 6 9.8963 -4.0409 8.4243 20 7 9.9506 -5.2793 8.8668 21 14 11.0612 -2.7519 9.1106 22 1 10.4328 -2.0908 10.2826 23 1 12.3283 -3.4029 9.5298 24 1 11.3483 -1.7372 8.0650 25 6 5.5166 0.3429 2.0142 26 7 3.4576 -0.6951 -0.0049 27 7 2.2192 -1.0431 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.9380 2.1282 -0.0007 32 1 4.5762 2.4505 -0.4329 33 1 5.5563 0.9729 -0.5878 34 1 3.3791 1.8902 2.2783 35 1 4.1212 3.3848 1.6594 36 1 4.1945 3.2982 4.1427 37 1 5.8327 3.2825 3.4458 38 1 4.2595 0.8453 4.3998 39 1 5.6537 1.5830 5.2258 40 1 5.8465 -1.5075 3.7777 41 1 7.8548 -2.9286 4.8773 42 1 6.6647 -2.5218 6.1367 43 1 10.5952 -5.5226 9.5496 44 1 6.1982 -0.2367 1.3917 45 1 4.5765 -0.1978 2.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713058428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:12 Heat of formation + Delta-G solvation = 37.996538 kcal Electronic energy + Delta-G solvation = -26799.177049 eV Core-core repulsion = 22978.960539 eV Total energy + Delta-G solvation = -3820.216510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -44.24481 -41.11541 -39.63423 -36.36825 -35.40339 -34.68316 -34.10252 -31.92376 -31.75815 -29.61327 -28.87224 -27.86118 -27.64316 -24.36064 -24.04457 -22.83164 -22.28512 -21.63204 -20.78207 -19.84781 -18.14079 -17.97024 -17.79249 -17.38454 -17.09538 -16.57774 -16.38640 -16.09148 -15.80970 -15.68899 -15.39366 -15.04290 -14.89266 -14.74146 -14.60895 -14.11341 -13.95198 -13.70104 -13.61788 -13.48590 -13.35514 -13.02047 -12.89415 -12.67395 -12.52091 -12.37861 -11.92108 -11.85343 -11.83157 -11.72101 -11.56695 -11.17844 -11.00534 -10.96512 -10.55727 -10.25327 -10.11944 -9.44221 -9.00850 -8.52323 -6.23427 0.65490 0.96761 1.30909 1.44218 1.47696 1.54052 1.55181 1.58953 2.14362 2.25070 2.68970 2.85625 3.07288 3.39469 3.67568 3.73902 3.82092 3.89781 4.03620 4.05008 4.11267 4.19843 4.23150 4.31311 4.32500 4.43771 4.54248 4.58860 4.61426 4.62224 4.69288 4.84472 4.87954 4.94244 5.00831 5.09311 5.17811 5.21619 5.32700 5.44515 5.68533 5.69890 5.97301 6.10377 6.10487 6.41893 6.92428 7.15575 7.52178 8.60230 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.002197 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.155782 B =12740.771287 C =13533.066767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.290 5.290 3 C -0.024 4.024 4 C -0.073 4.073 5 C 0.143 3.857 6 N -0.524 5.524 7 C 0.056 3.944 8 C -0.110 4.110 9 C -0.128 4.128 10 C 0.151 3.849 11 H 0.074 0.926 12 N -0.712 5.712 13 C 0.540 3.460 14 O -0.557 6.557 15 C -0.112 4.112 16 S -0.170 6.170 17 C -0.531 4.531 18 H 0.060 0.940 19 C 0.044 3.956 20 N -0.917 5.917 21 Si 0.916 3.084 22 H -0.261 1.261 23 H -0.258 1.258 24 H -0.237 1.237 25 C 0.070 3.930 26 N -0.299 5.299 27 N -0.131 5.131 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.232 0.768 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.034 0.966 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.411 0.589 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.073 0.927 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.316 20.469 -22.664 39.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.177 4.177 4 C -0.215 4.215 5 C 0.013 3.987 6 N -0.247 5.247 7 C -0.071 4.071 8 C -0.148 4.148 9 C -0.167 4.167 10 C 0.046 3.954 11 H 0.092 0.908 12 N -0.365 5.365 13 C 0.325 3.675 14 O -0.435 6.435 15 C -0.263 4.263 16 S 0.057 5.943 17 C -0.678 4.678 18 H 0.079 0.921 19 C -0.161 4.161 20 N -0.555 5.555 21 Si 0.738 3.262 22 H -0.186 1.186 23 H -0.182 1.182 24 H -0.161 1.161 25 C -0.059 4.059 26 N -0.165 5.165 27 N -0.110 5.110 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.249 0.751 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.247 0.753 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.716 20.610 -22.056 37.779 hybrid contribution -1.317 -1.445 0.286 1.976 sum -24.033 19.164 -21.770 37.667 Atomic orbital electron populations 1.22707 0.70130 1.07559 1.06624 1.47702 1.10945 1.04474 1.45208 1.24100 0.89923 0.96109 1.07596 1.23340 0.98137 0.91389 1.08585 1.20759 0.89266 0.99028 0.89641 1.62214 1.45094 1.14994 1.02434 1.22235 0.92677 0.98534 0.93668 1.21540 1.02181 0.95565 0.95531 1.21936 0.98627 0.97459 0.98685 1.20943 0.99300 0.83263 0.91866 0.90825 1.45807 1.37256 1.13436 1.40003 1.19896 0.79315 0.89042 0.79247 1.90678 1.48670 1.40848 1.63294 1.23273 1.02948 0.98572 1.01541 1.84650 1.46064 1.14719 1.48915 1.22466 1.24347 0.94440 1.26563 0.92135 1.25595 0.97865 0.97341 0.95307 1.70020 1.36935 1.18870 1.29657 0.85844 0.79444 0.80130 0.80803 1.18563 1.18193 1.16081 1.21996 0.99307 0.91397 0.93197 1.75075 1.10234 1.13999 1.17221 1.78298 0.96878 1.13822 1.22005 0.87349 0.88209 0.85086 0.75143 0.85211 0.89642 0.94785 0.87221 0.89375 0.91338 0.92063 0.93552 0.75278 0.87037 0.87093 0.91326 0.90832 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.06 11.39 127.77 1.46 1.52 16 2 N -0.29 -3.28 3.74 -369.24 -1.38 -4.66 16 3 C -0.02 -0.20 10.73 83.49 0.90 0.69 16 4 C -0.07 -1.08 4.81 41.60 0.20 -0.88 16 5 C 0.14 1.68 5.94 85.56 0.51 2.19 16 6 N -0.52 -8.04 4.86 -900.92 -4.38 -12.42 16 7 C 0.06 0.64 5.06 86.32 0.44 1.08 16 8 C -0.11 -1.71 6.09 30.64 0.19 -1.52 16 9 C -0.13 -2.88 5.58 30.67 0.17 -2.71 16 10 C 0.15 3.78 2.62 45.05 0.12 3.90 16 11 H 0.07 2.23 7.58 -2.39 -0.02 2.22 16 12 N -0.71 -19.82 5.08 -442.30 -2.25 -22.07 16 13 C 0.54 20.03 7.81 87.65 0.68 20.72 16 14 O -0.56 -24.94 15.53 -3.02 -0.05 -24.98 16 15 C -0.11 -4.52 6.16 71.23 0.44 -4.09 16 16 S -0.17 -8.90 18.55 -56.49 -1.05 -9.95 16 17 C -0.53 -31.82 10.04 67.96 0.68 -31.13 16 18 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 19 C 0.04 2.66 5.50 84.86 0.47 3.13 16 20 N -0.92 -56.97 13.97 21.65 0.30 -56.67 16 21 Si 0.92 45.99 27.74 68.60 1.90 47.89 16 22 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 25 C 0.07 1.44 4.36 86.33 0.38 1.82 16 26 N -0.30 -6.80 11.49 -48.60 -0.56 -7.35 16 27 N -0.13 -2.76 13.17 37.02 0.49 -2.27 16 28 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H 0.23 -0.36 8.06 -2.91 -0.02 -0.39 16 32 H 0.13 0.62 8.06 -2.39 -0.02 0.60 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 0.40 6.91 -2.39 -0.02 0.39 16 35 H 0.11 0.61 8.06 -2.38 -0.02 0.59 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.41 9.47 8.60 -92.70 -0.80 8.67 16 41 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 42 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 43 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 44 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 45 H 0.04 0.83 6.70 -2.38 -0.02 0.82 16 Total: -1.00 -85.29 381.02 -0.18 -85.47 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.17 Total: 12.29 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 6.62 Total: -5.28 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -7.77 Total: -105.45 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.98 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -85.29 -0.18 -85.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713058428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.469 kcal (2) G-P(sol) polarization free energy of solvation -85.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds