Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38246 * 119.99746 * 2 1 4 4 C 1.38225 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99859 * 0.02562 * 4 3 2 6 6 C 1.38222 * 119.99728 * 359.76879 * 5 4 3 7 7 C 1.38210 * 119.99939 * 180.02562 * 2 1 3 8 8 C 1.50703 * 119.99953 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47551 * 85.00160 * 8 7 2 10 10 H 1.09011 * 109.46603 * 304.99725 * 9 8 7 11 11 C 1.52996 * 109.47363 * 185.00031 * 9 8 7 12 12 O 1.42895 * 109.47137 * 304.99937 * 11 9 8 13 13 N 1.46502 * 109.47357 * 64.99629 * 9 8 7 14 14 C 1.34773 * 119.99998 * 205.00550 * 13 9 8 15 15 O 1.21547 * 119.99853 * 359.72238 * 14 13 9 16 16 C 1.47884 * 119.99895 * 179.72393 * 14 13 9 17 17 C 1.39924 * 120.02329 * 359.72759 * 16 14 13 18 18 C 1.38332 * 120.35448 * 179.71688 * 17 16 14 19 19 C 1.37746 * 120.41251 * 0.55486 * 18 17 16 20 20 C 1.40753 * 120.04277 * 359.72093 * 19 18 17 21 21 C 1.41434 * 120.17924 * 180.02562 * 20 19 18 22 22 H 1.08001 * 120.00207 * 334.92333 * 21 20 19 23 23 C 1.39942 * 119.99760 * 154.92934 * 21 20 19 24 24 N 1.30820 * 120.00202 * 342.58823 * 23 21 20 25 25 Si 1.86800 * 119.99608 * 162.58665 * 23 21 20 26 26 H 1.48505 * 109.47173 * 60.00268 * 25 23 21 27 27 H 1.48502 * 109.46998 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47724 * 299.99908 * 25 23 21 29 29 C 1.38989 * 120.02464 * 179.97438 * 16 14 13 30 30 H 1.08991 * 109.47533 * 269.97752 * 1 2 3 31 31 H 1.09005 * 109.47180 * 29.98041 * 1 2 3 32 32 H 1.09001 * 109.47297 * 149.97702 * 1 2 3 33 33 H 1.07996 * 120.00544 * 359.97438 * 3 2 1 34 34 H 1.07995 * 119.99882 * 179.97438 * 4 3 2 35 35 H 1.07997 * 120.00152 * 179.97438 * 5 4 3 36 36 H 1.08002 * 119.99472 * 180.25214 * 6 5 4 37 37 H 1.09000 * 109.47029 * 324.99811 * 8 7 2 38 38 H 1.09009 * 109.47106 * 205.00142 * 8 7 2 39 39 H 1.09003 * 109.47348 * 64.99919 * 11 9 8 40 40 H 1.09000 * 109.47469 * 184.99565 * 11 9 8 41 41 H 0.96697 * 114.00035 * 180.02562 * 12 11 9 42 42 H 0.96994 * 119.99344 * 24.72877 * 13 9 8 43 43 H 1.07999 * 119.82154 * 359.97438 * 17 16 14 44 44 H 1.08005 * 119.79112 * 180.25861 * 18 17 16 45 45 H 1.08004 * 119.98171 * 179.74690 * 19 18 17 46 46 H 0.96996 * 120.00198 * 179.97438 * 24 23 21 47 47 H 1.07999 * 120.20318 * 359.97438 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0048 7 6 2.1981 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 6 1.0801 -2.8806 -1.4374 10 1 0.5302 -2.0613 -1.9007 11 6 0.2091 -4.1384 -1.4282 12 8 0.8831 -5.1794 -0.7182 13 7 2.3041 -3.1398 -2.1996 14 6 2.3069 -2.9950 -3.5396 15 8 1.2926 -2.6543 -4.1161 16 6 3.5441 -3.2507 -4.3083 17 6 4.7135 -3.6375 -3.6444 18 6 5.8731 -3.8841 -4.3573 19 6 5.8933 -3.7409 -5.7271 20 6 4.7282 -3.3471 -6.4117 21 6 4.7455 -3.1997 -7.8182 22 1 5.6737 -2.9860 -8.3274 23 6 3.5599 -3.3305 -8.5501 24 7 2.5195 -3.9125 -8.0114 25 14 3.4631 -2.6742 -10.2963 26 1 4.4809 -3.3535 -11.1376 27 1 2.1099 -2.9360 -10.8492 28 1 3.7216 -1.2119 -10.2907 29 6 3.5475 -3.1021 -5.6902 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 0.0001 35 1 5.3517 0.0000 0.0005 36 1 4.1206 -2.1323 0.0089 37 1 0.5341 -2.3959 0.5893 38 1 2.0697 -3.2826 0.4334 39 1 -0.7397 -3.9198 -0.9381 40 1 0.0230 -4.4592 -2.4532 41 1 0.3881 -6.0088 -0.6727 42 1 3.1134 -3.4117 -1.7394 43 1 4.7097 -3.7481 -2.5701 44 1 6.7695 -4.1862 -3.8360 45 1 6.8035 -3.9313 -6.2763 46 1 1.6976 -4.0029 -8.5185 47 1 2.6481 -2.8003 -6.2064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190647266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = -77.156497 kcal Electronic energy + Delta-G solvation = -29223.698512 eV Core-core repulsion = 25334.292233 eV Total energy + Delta-G solvation = -3889.406279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27314 -40.29326 -38.96147 -38.00748 -35.97188 -35.58109 -34.04662 -32.99635 -32.00397 -31.28863 -30.32426 -28.05579 -27.19617 -26.69919 -24.72160 -23.00578 -22.85897 -22.27281 -21.29455 -21.16856 -19.52554 -18.44073 -17.98801 -17.41179 -17.06293 -16.83188 -16.43382 -16.24973 -16.20109 -15.87801 -15.42636 -15.10156 -14.98079 -14.89363 -14.41760 -14.27977 -14.20268 -13.99937 -13.79232 -13.51469 -13.47871 -13.04311 -12.97544 -12.83806 -12.80663 -12.74521 -12.52106 -12.28097 -12.17846 -11.90514 -11.76230 -11.65866 -11.51162 -11.07074 -11.01695 -10.70999 -10.09896 -9.65551 -9.46682 -9.40780 -9.37706 -8.66376 -6.38537 0.39596 0.47311 0.52922 1.01334 1.35403 1.47157 1.49945 2.11960 2.19280 2.26539 2.79388 2.85635 3.37974 3.69160 3.73015 3.91641 3.94985 4.08216 4.12483 4.16778 4.31316 4.34671 4.41342 4.45093 4.49007 4.58347 4.64211 4.74123 4.75459 4.83038 4.89632 4.91234 4.99111 5.05793 5.08699 5.19233 5.23858 5.31263 5.36935 5.50587 5.54218 5.63428 5.66164 5.78661 5.86886 5.93135 6.04993 6.18400 6.28616 6.52099 6.70320 6.87057 6.87796 6.94666 7.34418 8.30415 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.003246 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.410032 B = 8624.978858 C = 9052.103752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.097 4.097 3 C -0.134 4.134 4 C -0.132 4.132 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.096 4.096 8 C -0.069 4.069 9 C 0.151 3.849 10 H 0.081 0.919 11 C 0.069 3.931 12 O -0.575 6.575 13 N -0.697 5.697 14 C 0.562 3.438 15 O -0.590 6.590 16 C -0.138 4.138 17 C -0.196 4.196 18 C -0.095 4.095 19 C -0.218 4.218 20 C 0.069 3.931 21 C -0.500 4.500 22 H 0.084 0.916 23 C 0.031 3.969 24 N -0.826 5.826 25 Si 0.982 3.018 26 H -0.252 1.252 27 H -0.271 1.271 28 H -0.261 1.261 29 C -0.130 4.130 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.395 0.605 42 H 0.408 0.592 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.108 0.892 46 H 0.286 0.714 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 3.805 18.795 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.152 4.152 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.139 4.139 7 C -0.096 4.096 8 C -0.106 4.106 9 C 0.046 3.954 10 H 0.099 0.901 11 C -0.010 4.010 12 O -0.383 6.383 13 N -0.348 5.348 14 C 0.352 3.648 15 O -0.472 6.472 16 C -0.141 4.141 17 C -0.216 4.216 18 C -0.113 4.113 19 C -0.237 4.237 20 C 0.067 3.933 21 C -0.529 4.529 22 H 0.102 0.898 23 C -0.184 4.184 24 N -0.451 5.451 25 Si 0.802 3.198 26 H -0.176 1.176 27 H -0.196 1.196 28 H -0.186 1.186 29 C -0.151 4.151 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.245 0.755 42 H 0.245 0.755 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.908 4.409 18.447 19.365 hybrid contribution -0.220 -0.339 -1.139 1.209 sum -4.129 4.070 17.308 18.253 Atomic orbital electron populations 1.20907 0.90074 1.03152 1.03310 1.20096 0.97199 0.92794 0.99655 1.21294 0.94679 0.98080 1.01184 1.21412 0.94645 0.98789 1.00120 1.21394 1.00799 0.92711 1.00529 1.21263 0.93872 0.98792 0.99942 1.19872 0.94001 0.94890 1.00793 1.20720 1.01988 0.93908 0.93998 1.21143 0.85892 0.96036 0.92314 0.90120 1.22520 0.95292 0.88158 0.95007 1.86395 1.49645 1.25040 1.77187 1.45686 1.14587 1.69301 1.05274 1.18688 0.87858 0.75522 0.82744 1.90649 1.35881 1.49749 1.70923 1.19804 0.93863 1.06405 0.94022 1.20794 0.92270 1.09758 0.98765 1.20899 0.97809 0.99065 0.93532 1.21400 0.98466 1.08773 0.95106 1.17931 0.91713 0.89566 0.94135 1.19845 0.95774 1.45086 0.92238 0.89816 1.26840 0.94213 0.92196 1.05169 1.69884 1.03864 1.30860 1.40505 0.85255 0.78638 0.79731 0.76147 1.17567 1.19581 1.18556 1.21425 0.99182 1.02452 0.92045 0.89271 0.91280 0.91449 0.84779 0.84638 0.84854 0.85307 0.87419 0.89031 0.89767 0.95942 0.75542 0.75493 0.85244 0.84477 0.87355 0.90332 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 9.22 71.24 0.66 -1.43 16 2 C -0.10 -2.22 5.88 -19.87 -0.12 -2.33 16 3 C -0.13 -2.99 9.70 22.27 0.22 -2.77 16 4 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 5 C -0.14 -3.13 10.05 22.27 0.22 -2.91 16 6 C -0.12 -2.85 9.37 22.27 0.21 -2.64 16 7 C -0.10 -2.23 4.88 -19.87 -0.10 -2.33 16 8 C -0.07 -1.40 3.91 29.85 0.12 -1.29 16 9 C 0.15 4.08 2.10 44.99 0.09 4.17 16 10 H 0.08 2.51 6.46 -2.38 -0.02 2.50 16 11 C 0.07 1.66 6.85 71.98 0.49 2.16 16 12 O -0.57 -12.18 12.83 -148.98 -1.91 -14.10 16 13 N -0.70 -23.15 4.58 -445.37 -2.04 -25.19 16 14 C 0.56 25.41 7.74 86.80 0.67 26.08 16 15 O -0.59 -30.95 16.00 -3.86 -0.06 -31.01 16 16 C -0.14 -6.74 5.87 -20.13 -0.12 -6.85 16 17 C -0.20 -8.04 9.55 22.70 0.22 -7.83 16 18 C -0.10 -3.89 10.01 22.18 0.22 -3.67 16 19 C -0.22 -10.41 9.78 22.77 0.22 -10.19 16 20 C 0.07 3.82 5.57 -21.32 -0.12 3.70 16 21 C -0.50 -27.74 9.05 23.47 0.21 -27.53 16 22 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 23 C 0.03 1.63 5.14 85.26 0.44 2.07 16 24 N -0.83 -46.74 10.97 21.82 0.24 -46.50 16 25 Si 0.98 40.19 29.59 68.60 2.03 42.22 16 26 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 27 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 28 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 29 C -0.13 -7.43 8.23 23.01 0.19 -7.24 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 32 H 0.07 1.21 5.49 -2.39 -0.01 1.20 16 33 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.13 2.66 8.02 -2.91 -0.02 2.63 16 37 H 0.11 1.72 6.99 -2.39 -0.02 1.70 16 38 H 0.09 1.80 7.64 -2.38 -0.02 1.78 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.40 5.07 9.12 -74.06 -0.68 4.39 16 42 H 0.41 11.97 6.39 -92.71 -0.59 11.38 16 43 H 0.13 4.19 6.38 -2.91 -0.02 4.17 16 44 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 45 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 46 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 47 H 0.10 6.19 5.76 -2.91 -0.02 6.17 16 Total: -1.00 -73.47 389.47 1.96 -71.51 By element: Atomic # 1 Polarization: 46.85 SS G_CDS: -0.26 Total: 46.60 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 3.96 Total: -43.53 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.80 Total: -71.69 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.97 Total: -45.11 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -73.47 1.96 -71.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190647266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.645 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds