Wall clock time and date at job start Sat Apr 11 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38232 * 120.00249 * 2 1 4 4 C 1.38238 * 120.00155 * 179.72811 * 3 2 1 5 5 C 1.38242 * 120.00011 * 0.27212 * 4 3 2 6 6 C 1.50697 * 120.00130 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46791 * 90.00037 * 6 5 4 8 8 H 1.08995 * 109.47188 * 304.99967 * 7 6 5 9 9 C 1.53002 * 109.46781 * 184.99973 * 7 6 5 10 10 O 1.42900 * 109.47345 * 304.99992 * 9 7 6 11 11 N 1.46503 * 109.46936 * 65.00187 * 7 6 5 12 12 C 1.34776 * 119.99621 * 204.99479 * 11 7 6 13 13 O 1.21548 * 120.00028 * 0.02562 * 12 11 7 14 14 C 1.47885 * 119.99759 * 179.97438 * 12 11 7 15 15 C 1.39918 * 120.02541 * 359.73035 * 14 12 11 16 16 C 1.38331 * 120.35842 * 179.71030 * 15 14 12 17 17 C 1.37748 * 120.40999 * 0.56485 * 16 15 14 18 18 C 1.40749 * 120.04052 * 359.71918 * 17 16 15 19 19 C 1.41438 * 120.17955 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00081 * 150.17579 * 19 18 17 21 21 C 1.39940 * 119.99895 * 330.17970 * 19 18 17 22 22 N 1.30826 * 119.99941 * 161.73155 * 21 19 18 23 23 Si 1.86797 * 119.99850 * 341.72554 * 21 19 18 24 24 H 1.48500 * 109.47018 * 95.41603 * 23 21 19 25 25 H 1.48500 * 109.47078 * 215.41686 * 23 21 19 26 26 H 1.48496 * 109.47151 * 335.41525 * 23 21 19 27 27 C 1.38992 * 120.02562 * 180.02562 * 14 12 11 28 28 C 1.38241 * 119.99684 * 359.97438 * 5 4 3 29 29 C 1.38232 * 120.00095 * 359.97438 * 28 5 4 30 30 H 1.08997 * 109.47342 * 89.99994 * 1 2 3 31 31 H 1.08993 * 109.47102 * 210.00259 * 1 2 3 32 32 H 1.08998 * 109.46906 * 330.00130 * 1 2 3 33 33 H 1.07996 * 120.00154 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.00107 * 180.25194 * 4 3 2 35 35 H 1.08998 * 109.47017 * 210.00180 * 6 5 4 36 36 H 1.09000 * 109.46726 * 330.00349 * 6 5 4 37 37 H 1.08994 * 109.47067 * 65.00038 * 9 7 6 38 38 H 1.08996 * 109.46908 * 185.00387 * 9 7 6 39 39 H 0.96697 * 114.00052 * 179.97438 * 10 9 7 40 40 H 0.97003 * 120.00080 * 24.99764 * 11 7 6 41 41 H 1.08001 * 119.82324 * 359.97438 * 15 14 12 42 42 H 1.08001 * 119.79546 * 180.25777 * 16 15 14 43 43 H 1.08005 * 119.98205 * 179.73766 * 17 16 15 44 44 H 0.96998 * 119.99696 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.20526 * 359.97438 * 27 14 12 46 46 H 1.07991 * 119.99879 * 179.97438 * 28 5 4 47 47 H 1.07997 * 119.99721 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0057 5 6 4.2718 -0.0001 0.0057 6 6 5.7787 -0.0002 0.0113 7 6 6.2833 -0.0033 1.4558 8 1 5.8467 0.8373 1.9949 9 6 7.8081 0.1224 1.4635 10 8 8.3756 -0.9137 0.6595 11 7 5.8932 -1.2566 2.1065 12 6 5.7614 -1.3072 3.4469 13 8 5.9658 -0.3131 4.1156 14 6 5.3672 -2.5722 4.1038 15 6 5.1253 -3.7151 3.3338 16 6 4.7620 -4.9035 3.9416 17 6 4.6227 -4.9726 5.3102 18 6 4.8560 -3.8317 6.1007 19 6 4.7144 -3.8995 7.5064 20 1 5.3112 -3.2608 8.1406 21 6 3.8011 -4.7942 8.0752 22 7 3.9078 -5.1241 9.3367 23 14 2.4296 -5.5173 7.0334 24 1 2.8498 -6.8431 6.5130 25 1 1.2084 -5.6756 7.8635 26 1 2.1402 -4.6080 5.8957 27 6 5.2306 -2.6249 5.4859 28 6 3.5805 -1.1973 0.0005 29 6 2.1982 -1.1972 -0.0041 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1324 -0.0004 34 1 4.1206 2.1324 0.0098 35 1 6.1439 -0.8890 -0.5031 36 1 6.1439 0.8909 -0.4992 37 1 8.0947 1.0935 1.0601 38 1 8.1750 0.0310 2.4858 39 1 9.3415 -0.8953 0.6184 40 1 5.7299 -2.0499 1.5727 41 1 5.2270 -3.6705 2.2595 42 1 4.5815 -5.7813 3.3388 43 1 4.3346 -5.9029 5.7772 44 1 3.2745 -5.7440 9.7311 45 1 5.4120 -1.7440 6.0839 46 1 4.1204 -2.1325 0.0001 47 1 1.6582 -2.1325 -0.0085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191056003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:48 Heat of formation + Delta-G solvation = -58.712467 kcal Electronic energy + Delta-G solvation = -28824.676217 eV Core-core repulsion = 24936.069731 eV Total energy + Delta-G solvation = -3888.606486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.02679 -39.16536 -37.67017 -36.86170 -35.08684 -33.70994 -33.10998 -31.19301 -30.94178 -30.17409 -29.67116 -27.81908 -25.21380 -24.84336 -23.38125 -22.77379 -21.32945 -20.77054 -20.44400 -19.92197 -17.96604 -17.49689 -16.49393 -16.23182 -15.89031 -15.50165 -15.31607 -15.19722 -14.85688 -14.64901 -14.22450 -13.89753 -13.70010 -13.61924 -13.47058 -13.45024 -12.89336 -12.77774 -12.73180 -12.66981 -12.27295 -12.06937 -11.91010 -11.79287 -11.58244 -11.29078 -11.03295 -10.97548 -10.95873 -10.76213 -10.53025 -10.13655 -9.99137 -9.70408 -9.40063 -9.11541 -8.96245 -8.79069 -8.48855 -7.84602 -7.73676 -6.99346 -4.53906 1.28282 1.38595 1.94625 2.53478 3.06143 3.18095 3.26927 3.51328 3.64237 3.68442 3.94304 4.21083 4.50254 4.59889 4.71794 4.82439 4.91935 4.96647 5.07600 5.21467 5.27400 5.35005 5.35743 5.41641 5.43716 5.46830 5.61122 5.66017 5.72170 5.74238 5.87774 5.96191 6.05291 6.05843 6.10340 6.37749 6.40740 6.54958 6.57063 6.68194 6.69244 6.78823 6.98302 7.00127 7.23183 7.43051 7.50091 7.52168 7.76834 7.84486 8.05379 8.29554 8.54940 8.71463 8.76464 10.03000 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.010275 B = 0.003503 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.304949 B = 7992.233272 C = 9729.870021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.086 4.086 6 C -0.082 4.082 7 C 0.156 3.844 8 H 0.099 0.901 9 C 0.063 3.937 10 O -0.568 6.568 11 N -0.717 5.717 12 C 0.565 3.435 13 O -0.553 6.553 14 C -0.107 4.107 15 C -0.212 4.212 16 C -0.084 4.084 17 C -0.222 4.222 18 C 0.082 3.918 19 C -0.444 4.444 20 H 0.093 0.907 21 C 0.084 3.916 22 N -0.805 5.805 23 Si 0.910 3.090 24 H -0.269 1.269 25 H -0.289 1.289 26 H -0.244 1.244 27 C -0.136 4.136 28 C -0.104 4.104 29 C -0.115 4.115 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.377 0.623 40 H 0.401 0.599 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.286 0.714 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.425 8.386 -20.398 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.132 4.132 5 C -0.086 4.086 6 C -0.120 4.120 7 C 0.050 3.950 8 H 0.117 0.883 9 C -0.016 4.016 10 O -0.373 6.373 11 N -0.370 5.370 12 C 0.356 3.644 13 O -0.432 6.432 14 C -0.110 4.110 15 C -0.232 4.232 16 C -0.102 4.102 17 C -0.241 4.241 18 C 0.079 3.921 19 C -0.472 4.472 20 H 0.111 0.889 21 C -0.135 4.135 22 N -0.429 5.429 23 Si 0.736 3.264 24 H -0.196 1.196 25 H -0.217 1.217 26 H -0.167 1.167 27 C -0.157 4.157 28 C -0.122 4.122 29 C -0.133 4.133 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.223 0.777 40 H 0.237 0.763 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.132 0.868 46 H 0.137 0.863 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.977 8.852 -19.720 21.638 hybrid contribution -0.063 -0.679 -0.346 0.765 sum -1.040 8.173 -20.067 21.692 Atomic orbital electron populations 1.20782 0.91399 1.02884 1.02008 1.19909 0.96015 0.93285 0.99991 1.20973 0.94167 0.97410 1.01267 1.20989 0.94170 0.97432 1.00624 1.19807 0.95321 0.93310 1.00165 1.20785 0.91025 1.04226 0.95927 1.20947 0.91963 0.89175 0.92884 0.88327 1.22683 0.94226 0.89846 0.94873 1.86456 1.25079 1.53755 1.72013 1.45863 1.71172 1.12791 1.07158 1.18778 0.75509 0.88800 0.81348 1.90680 1.51458 1.36878 1.64158 1.19422 1.05012 0.91986 0.94554 1.20376 1.12523 0.93452 0.96896 1.20505 0.98905 0.96245 0.94537 1.21171 1.11213 0.97976 0.93746 1.17691 0.90500 0.90283 0.93590 1.19513 1.19330 1.17901 0.90453 0.88890 1.26152 0.98714 0.93381 0.95261 1.69692 1.33406 1.26081 1.13692 0.86323 0.79228 0.80234 0.80580 1.19556 1.21675 1.16700 1.21266 1.05004 0.97390 0.91996 1.21000 0.94150 0.97467 0.99564 1.21035 0.94246 0.97564 1.00488 0.91417 0.91474 0.91655 0.86341 0.86251 0.89557 0.89833 0.93104 0.92667 0.77699 0.76311 0.88716 0.88338 0.87933 0.90355 0.86759 0.86270 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.09 -1.04 5.88 -104.62 -0.62 -1.66 16 3 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 4 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 5 C -0.09 -0.99 4.95 -104.62 -0.52 -1.51 16 6 C -0.08 -0.84 4.61 -27.88 -0.13 -0.97 16 7 C 0.16 1.97 2.36 -67.92 -0.16 1.81 16 8 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 9 C 0.06 0.70 6.85 37.16 0.25 0.96 16 10 O -0.57 -5.94 12.83 -35.23 -0.45 -6.40 16 11 N -0.72 -10.94 4.42 -54.73 -0.24 -11.18 16 12 C 0.57 11.23 7.74 -12.31 -0.10 11.14 16 13 O -0.55 -12.42 16.00 5.32 0.09 -12.34 16 14 C -0.11 -2.32 5.87 -105.04 -0.62 -2.94 16 15 C -0.21 -4.19 9.55 -38.92 -0.37 -4.56 16 16 C -0.08 -1.73 10.01 -39.73 -0.40 -2.13 16 17 C -0.22 -5.22 7.17 -38.81 -0.28 -5.50 16 18 C 0.08 2.10 5.10 -106.87 -0.55 1.55 16 19 C -0.44 -12.06 9.57 -37.73 -0.36 -12.42 16 20 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 21 C 0.08 2.20 5.40 -17.34 -0.09 2.10 16 22 N -0.80 -21.37 13.93 55.55 0.77 -20.60 16 23 Si 0.91 20.56 24.52 -169.99 -4.17 16.39 16 24 H -0.27 -5.83 6.71 56.52 0.38 -5.46 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.24 -5.66 6.86 56.52 0.39 -5.27 16 27 C -0.14 -3.33 9.34 -38.44 -0.36 -3.69 16 28 C -0.10 -1.24 9.10 -39.58 -0.36 -1.60 16 29 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.09 0.88 7.67 -51.93 -0.40 0.49 16 36 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.38 2.40 9.12 45.56 0.42 2.82 16 40 H 0.40 5.61 5.85 -40.82 -0.24 5.37 16 41 H 0.09 1.54 6.38 -52.49 -0.33 1.20 16 42 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.10 2.40 4.72 -52.48 -0.25 2.15 16 44 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 45 H 0.11 2.86 7.64 -52.48 -0.40 2.46 16 46 H 0.12 1.30 7.57 -52.49 -0.40 0.90 16 47 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -31.11 388.75 -9.39 -40.50 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.81 Total: 12.94 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -5.44 Total: -25.17 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.53 Total: -31.78 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.37 Total: -18.73 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.17 Total: 16.39 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.11 -9.39 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191056003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.213 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds