Wall clock time and date at job start Sat Apr 11 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 119.99793 * 2 1 4 4 C 1.38212 * 119.99845 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00147 * 0.02649 * 4 3 2 6 6 C 1.38203 * 120.00163 * 359.95369 * 5 4 3 7 7 C 1.50699 * 120.00301 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47340 * 89.99733 * 7 6 5 9 9 H 1.08994 * 109.46543 * 305.00221 * 8 7 6 10 10 C 1.52997 * 109.46979 * 184.99846 * 8 7 6 11 11 O 1.42892 * 109.47471 * 305.00463 * 10 8 7 12 12 N 1.46498 * 109.46898 * 65.00314 * 8 7 6 13 13 C 1.34774 * 119.99669 * 205.00092 * 12 8 7 14 14 O 1.21550 * 120.00221 * 359.97438 * 13 12 8 15 15 C 1.47886 * 120.00168 * 180.27493 * 13 12 8 16 16 C 1.39920 * 120.02326 * 359.44637 * 15 13 12 17 17 C 1.38327 * 120.36048 * 179.71545 * 16 15 13 18 18 C 1.37753 * 120.40898 * 0.56504 * 17 16 15 19 19 C 1.40746 * 120.04035 * 359.71592 * 18 17 16 20 20 C 1.41437 * 120.17923 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99845 * 334.92899 * 20 19 18 22 22 C 1.39936 * 120.00340 * 154.93332 * 20 19 18 23 23 N 1.30823 * 119.99598 * 342.58086 * 22 20 19 24 24 Si 1.86795 * 120.00306 * 162.58558 * 22 20 19 25 25 H 1.48494 * 109.47345 * 89.99634 * 24 22 20 26 26 H 1.48501 * 109.47433 * 209.99919 * 24 22 20 27 27 H 1.48504 * 109.47118 * 329.99571 * 24 22 20 28 28 C 1.38993 * 120.02928 * 179.72332 * 15 13 12 29 29 C 1.38215 * 120.00289 * 180.21118 * 2 1 3 30 30 H 1.09000 * 109.47237 * 90.00441 * 1 2 3 31 31 H 1.08999 * 109.46960 * 209.99798 * 1 2 3 32 32 H 1.08996 * 109.47433 * 329.99953 * 1 2 3 33 33 H 1.07990 * 120.00346 * 0.02562 * 3 2 1 34 34 H 1.08010 * 120.00054 * 180.02562 * 4 3 2 35 35 H 1.08000 * 119.99811 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46857 * 329.99368 * 7 6 5 37 37 H 1.08999 * 109.47050 * 210.00160 * 7 6 5 38 38 H 1.09002 * 109.47022 * 65.00473 * 10 8 7 39 39 H 1.08992 * 109.46993 * 184.99719 * 10 8 7 40 40 H 0.96699 * 114.00095 * 180.02562 * 11 10 8 41 41 H 0.97005 * 120.00200 * 24.99770 * 12 8 7 42 42 H 1.08006 * 119.82294 * 359.97438 * 16 15 13 43 43 H 1.08002 * 119.79624 * 180.26411 * 17 16 15 44 44 H 1.08003 * 119.98315 * 179.74613 * 18 17 16 45 45 H 0.97002 * 120.00192 * 180.02562 * 23 22 20 46 46 H 1.07998 * 120.20203 * 359.97438 * 28 15 13 47 47 H 1.08003 * 120.00220 * 0.04549 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3343 -2.5020 0.0015 8 6 4.5892 -2.9431 1.4442 9 1 5.1009 -2.1456 1.9828 10 6 5.4605 -4.2008 1.4465 11 8 4.8441 -5.2088 0.6429 12 7 3.3114 -3.2332 2.0992 13 6 3.2065 -3.1467 3.4401 14 8 4.1724 -2.8285 4.1059 15 6 1.9182 -3.4454 4.1019 16 6 0.8047 -3.8066 3.3355 17 6 -0.4022 -4.0932 3.9477 18 6 -0.5251 -4.0151 5.3176 19 6 0.5825 -3.6478 6.1045 20 6 0.4598 -3.5673 7.5112 21 1 -0.5055 -3.3832 7.9595 22 6 1.5890 -3.7260 8.3224 23 7 2.6717 -4.2762 7.8359 24 14 1.5505 -3.1526 10.0997 25 1 1.0780 -4.2612 10.9674 26 1 2.9156 -2.7441 10.5179 27 1 0.6271 -1.9965 10.2269 28 6 1.8110 -3.3620 5.4852 29 6 2.1981 -1.1969 -0.0044 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1328 0.0010 35 1 5.3517 0.0001 0.0005 36 1 5.2866 -2.3718 -0.5124 37 1 3.7452 -3.2618 -0.5121 38 1 6.4434 -3.9626 1.0398 39 1 5.5687 -4.5659 2.4677 40 1 5.3426 -6.0362 0.5991 41 1 2.5406 -3.4874 1.5678 42 1 0.8889 -3.8661 2.2604 43 1 -1.2548 -4.3752 3.3477 44 1 -1.4717 -4.2364 5.7880 45 1 3.4543 -4.3866 8.3982 46 1 2.6668 -3.0797 6.0803 47 1 1.6582 -2.1323 -0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191252645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:55 Heat of formation + Delta-G solvation = -59.872065 kcal Electronic energy + Delta-G solvation = -29113.913424 eV Core-core repulsion = 25225.256654 eV Total energy + Delta-G solvation = -3888.656770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.88960 -38.98708 -37.43314 -36.62509 -34.85081 -33.73032 -32.94063 -31.78863 -30.45296 -29.43994 -29.01755 -26.92797 -26.04217 -25.27778 -23.10720 -22.07293 -21.26493 -20.88803 -20.09867 -19.50318 -17.77958 -17.35603 -16.50186 -16.22012 -15.74826 -15.24473 -15.14909 -15.03895 -14.73035 -14.48253 -14.07015 -13.76587 -13.56208 -13.35820 -13.21160 -13.15330 -12.89706 -12.69067 -12.50779 -12.45451 -12.14086 -11.86851 -11.72014 -11.58858 -11.26750 -11.13608 -11.05540 -10.94343 -10.79829 -10.71183 -10.47575 -10.04330 -9.97058 -9.66309 -9.19057 -8.96502 -8.72803 -8.66534 -8.46530 -7.59129 -7.48542 -6.77691 -4.38984 1.38128 1.43820 2.25437 2.83684 3.08737 3.11798 3.17961 3.70415 3.76516 3.89315 3.94114 4.33831 4.63612 4.69703 4.80682 4.90424 5.00495 5.13152 5.28395 5.30374 5.36485 5.39608 5.53754 5.60087 5.61158 5.64171 5.68465 5.79367 5.85952 5.89445 6.07047 6.12495 6.13473 6.22775 6.31183 6.48645 6.59986 6.66625 6.74772 6.94611 7.01702 7.05202 7.06720 7.23923 7.41364 7.61585 7.73607 7.80113 7.95831 8.15252 8.23456 8.53437 8.82944 8.86399 9.01437 10.17155 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003385 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.969450 B = 8270.740225 C = 9122.496849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.075 4.075 7 C -0.083 4.083 8 C 0.157 3.843 9 H 0.098 0.902 10 C 0.063 3.937 11 O -0.568 6.568 12 N -0.720 5.720 13 C 0.566 3.434 14 O -0.551 6.551 15 C -0.126 4.126 16 C -0.213 4.213 17 C -0.098 4.098 18 C -0.212 4.212 19 C 0.099 3.901 20 C -0.462 4.462 21 H 0.080 0.920 22 C 0.074 3.926 23 N -0.785 5.785 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.260 1.260 28 C -0.092 4.092 29 C -0.108 4.108 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.376 0.624 41 H 0.399 0.601 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.284 0.716 46 H 0.133 0.867 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 4.643 -16.075 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.143 4.143 6 C -0.075 4.075 7 C -0.120 4.120 8 C 0.051 3.949 9 H 0.115 0.885 10 C -0.016 4.016 11 O -0.373 6.373 12 N -0.373 5.373 13 C 0.357 3.643 14 O -0.430 6.430 15 C -0.129 4.129 16 C -0.234 4.234 17 C -0.117 4.117 18 C -0.232 4.232 19 C 0.097 3.903 20 C -0.491 4.491 21 H 0.098 0.902 22 C -0.145 4.145 23 N -0.409 5.409 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.184 1.184 28 C -0.112 4.112 29 C -0.126 4.126 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.222 0.778 41 H 0.235 0.765 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.095 0.905 46 H 0.150 0.850 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.853 5.270 -15.600 16.911 hybrid contribution 0.204 -0.409 0.680 0.819 sum 4.056 4.861 -14.921 16.208 Atomic orbital electron populations 1.20806 0.91189 1.03292 1.01974 1.19914 0.96138 0.93117 0.98889 1.20993 0.94273 0.97436 1.01806 1.21068 0.94327 0.97823 1.00204 1.20977 0.99596 0.92084 1.01610 1.19815 0.93811 0.94788 0.99080 1.20798 1.00869 0.94210 0.96152 1.20896 0.86045 0.95306 0.92637 0.88458 1.22689 0.94788 0.89237 0.94926 1.86452 1.52514 1.26232 1.72081 1.45866 1.12456 1.71740 1.07217 1.18840 0.89008 0.75373 0.81124 1.90678 1.39769 1.48260 1.64289 1.19466 0.91679 1.06950 0.94828 1.20327 0.93695 1.12846 0.96488 1.20422 0.95865 1.00681 0.94695 1.21094 0.99186 1.09661 0.93216 1.17586 0.90768 0.88546 0.93423 1.19570 0.95172 1.43430 0.90884 0.90155 1.25945 0.94713 0.92523 1.01308 1.69791 1.03418 1.29380 1.38322 0.86306 0.78704 0.80116 0.81615 1.19461 1.19982 1.18390 1.21621 0.99306 0.99125 0.91177 1.20906 0.93466 0.97569 1.00656 0.91420 0.91047 0.91592 0.86421 0.86345 0.86355 0.89901 0.89590 0.93261 0.92590 0.77797 0.76491 0.89382 0.88983 0.88688 0.90528 0.84952 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 10.01 36.00 0.36 -0.86 16 2 C -0.08 -1.01 5.88 -104.62 -0.62 -1.62 16 3 C -0.13 -1.51 9.70 -39.58 -0.38 -1.89 16 4 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 5 C -0.12 -1.49 9.70 -39.59 -0.38 -1.87 16 6 C -0.07 -0.94 4.95 -104.62 -0.52 -1.46 16 7 C -0.08 -0.94 4.61 -27.88 -0.13 -1.07 16 8 C 0.16 2.23 2.36 -67.93 -0.16 2.07 16 9 H 0.10 1.53 7.58 -51.93 -0.39 1.14 16 10 C 0.06 0.81 6.85 37.16 0.25 1.06 16 11 O -0.57 -6.78 12.83 -35.23 -0.45 -7.24 16 12 N -0.72 -12.27 4.43 -54.74 -0.24 -12.52 16 13 C 0.57 12.54 7.74 -12.31 -0.10 12.44 16 14 O -0.55 -13.82 16.00 5.32 0.09 -13.74 16 15 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 16 C -0.21 -4.56 9.55 -38.92 -0.37 -4.93 16 17 C -0.10 -2.12 10.01 -39.73 -0.40 -2.52 16 18 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 19 C 0.10 2.65 5.57 -106.87 -0.59 2.06 16 20 C -0.46 -12.26 9.05 -37.73 -0.34 -12.60 16 21 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 22 C 0.07 1.89 5.14 -17.35 -0.09 1.80 16 23 N -0.78 -20.98 10.97 55.55 0.61 -20.37 16 24 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 28 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 29 C -0.11 -1.39 8.76 -39.58 -0.35 -1.74 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.38 2.93 9.12 45.56 0.42 3.35 16 41 H 0.40 6.30 5.87 -40.82 -0.24 6.06 16 42 H 0.09 1.59 6.38 -52.48 -0.33 1.25 16 43 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 45 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 46 H 0.13 3.87 5.76 -52.49 -0.30 3.57 16 47 H 0.12 1.44 7.59 -52.48 -0.40 1.04 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -31.60 394.08 -10.46 -42.06 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -5.84 Total: 16.73 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -5.52 Total: -24.78 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.37 Total: -32.89 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.37 Total: -20.97 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.60 -10.46 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191252645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.811 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds