Wall clock time and date at job start Sat Apr 11 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30496 * 125.65289 * 2 1 4 4 C 1.34126 * 109.26058 * 179.97438 * 3 2 1 5 5 N 1.48028 * 125.99152 * 179.97438 * 4 3 2 6 6 O 1.21798 * 119.99740 * 0.02562 * 5 4 3 7 7 O 1.21798 * 119.99717 * 180.02562 * 5 4 3 8 8 C 1.34666 * 108.01727 * 359.72411 * 4 3 2 9 9 N 1.35043 * 125.64775 * 179.97438 * 2 1 3 10 10 C 1.46498 * 126.40137 * 0.02562 * 9 2 1 11 11 C 1.52992 * 109.47364 * 84.99694 * 10 9 2 12 12 C 1.50702 * 109.47263 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99854 * 359.72154 * 12 11 10 14 14 O 1.34234 * 119.99997 * 179.97438 * 12 11 10 15 15 C 1.45199 * 116.99947 * 179.72219 * 14 12 11 16 16 C 1.53003 * 109.46980 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47295 * 300.00004 * 16 15 14 18 18 C 1.52996 * 109.46723 * 60.00112 * 16 15 14 19 19 C 1.52999 * 109.46725 * 180.02562 * 16 15 14 20 20 C 1.50707 * 109.46730 * 180.02562 * 19 16 15 21 21 H 1.07993 * 120.00041 * 359.97438 * 20 19 16 22 22 C 1.37878 * 119.99770 * 179.97438 * 20 19 16 23 23 N 1.31516 * 119.99976 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46920 * 60.00473 * 24 22 20 26 26 H 1.48500 * 109.47164 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47273 * 300.00423 * 24 22 20 28 28 H 1.08997 * 109.47383 * 270.00492 * 1 2 3 29 29 H 1.08998 * 109.46946 * 30.01091 * 1 2 3 30 30 H 1.09001 * 109.46962 * 150.00498 * 1 2 3 31 31 H 1.08002 * 126.59444 * 180.26523 * 8 4 3 32 32 H 1.09001 * 109.46865 * 324.99115 * 10 9 2 33 33 H 1.09001 * 109.47115 * 204.99594 * 10 9 2 34 34 H 1.09001 * 109.47602 * 59.99873 * 11 10 9 35 35 H 1.09001 * 109.46922 * 300.00018 * 11 10 9 36 36 H 1.08997 * 109.46967 * 299.99772 * 15 14 12 37 37 H 1.09002 * 109.46640 * 59.99976 * 15 14 12 38 38 H 1.09003 * 109.46899 * 60.00092 * 17 16 15 39 39 H 1.08997 * 109.47216 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.47450 * 300.00471 * 17 16 15 41 41 H 1.09002 * 109.47098 * 60.00096 * 18 16 15 42 42 H 1.09006 * 109.46719 * 179.97438 * 18 16 15 43 43 H 1.08999 * 109.47654 * 299.99443 * 18 16 15 44 44 H 1.08997 * 109.46920 * 299.99829 * 19 16 15 45 45 H 1.08991 * 109.47398 * 60.00345 * 19 16 15 46 46 H 0.96998 * 119.99385 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 0.0006 5 7 4.7269 1.5854 0.0002 6 8 4.5655 2.7926 -0.0002 7 8 5.8531 1.1215 0.0003 8 6 3.5926 -0.6643 0.0071 9 7 2.2940 -1.0974 0.0005 10 6 1.8425 -2.4910 0.0006 11 6 1.5662 -2.9377 -1.4363 12 6 1.1011 -4.3712 -1.4362 13 8 1.0058 -4.9752 -0.3941 14 8 0.7977 -4.9785 -2.5942 15 6 0.3624 -6.3617 -2.5188 16 6 0.0632 -6.8796 -3.9271 17 6 -1.0421 -6.0308 -4.5585 18 6 1.3280 -6.7888 -4.7832 19 6 -0.3960 -8.3369 -3.8476 20 6 -0.6901 -8.8472 -5.2348 21 1 -0.5626 -8.1971 -6.0876 22 6 -1.1218 -10.1442 -5.4150 23 7 -1.2775 -10.9358 -4.3764 24 14 -1.4871 -10.7765 -7.1343 25 1 -0.2594 -10.6884 -7.9653 26 1 -1.9315 -12.1914 -7.0574 27 1 -2.5599 -9.9527 -7.7473 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 4.4776 -1.2832 0.0133 32 1 0.9296 -2.5771 0.5899 33 1 2.6165 -3.1237 0.4352 34 1 2.4791 -2.8517 -2.0256 35 1 0.7923 -2.3051 -1.8710 36 1 1.1497 -6.9663 -2.0686 37 1 -0.5389 -6.4262 -1.9092 38 1 -0.7153 -4.9925 -4.6151 39 1 -1.2549 -6.3995 -5.5619 40 1 -1.9431 -6.0954 -3.9486 41 1 2.1155 -7.3935 -4.3333 42 1 1.1150 -7.1582 -5.7864 43 1 1.6548 -5.7505 -4.8398 44 1 0.3912 -8.9418 -3.3976 45 1 -1.2971 -8.4011 -3.2378 46 1 -1.5809 -11.8483 -4.5033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195043860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:58 Heat of formation + Delta-G solvation = -45.345387 kcal Electronic energy + Delta-G solvation = -28663.182075 eV Core-core repulsion = 24364.305966 eV Total energy + Delta-G solvation = -4298.876109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.55153 -42.02323 -40.68919 -37.67452 -36.78888 -35.97480 -35.57406 -32.88870 -32.47253 -31.74738 -28.93768 -27.67639 -26.99849 -26.57134 -26.29592 -24.96192 -23.09786 -22.23547 -21.27072 -20.79524 -19.45918 -18.75485 -18.48903 -18.06619 -17.91695 -17.01732 -16.87303 -16.54431 -16.36807 -15.78102 -15.23759 -14.97680 -14.64870 -14.31443 -13.92756 -13.68540 -13.65423 -13.32430 -13.16212 -13.00614 -12.60879 -12.49725 -12.18881 -12.15887 -11.87450 -11.70262 -11.43855 -11.38899 -11.08633 -11.06652 -11.01328 -10.94582 -10.77567 -10.74205 -10.53251 -10.48903 -10.34320 -9.91000 -9.66247 -9.36275 -9.08620 -8.46541 -6.10930 -4.12716 -0.13749 0.75432 1.02130 1.62830 1.90389 2.05293 2.58100 3.25468 3.31040 3.32480 3.47908 3.66907 3.75529 3.83146 4.15867 4.34068 4.41341 4.51152 4.62895 4.67728 4.80972 4.91202 4.99415 5.09864 5.23779 5.24521 5.27119 5.31541 5.62098 5.82737 5.91632 6.00546 6.09330 6.19367 6.33865 6.38003 6.55546 6.58141 6.69692 6.95162 6.96111 6.98761 7.47253 7.47398 7.51965 7.58282 7.86705 8.27586 8.91177 9.50958 11.00502 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.001731 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.815528 B =16170.615341 C =16411.986465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.251 3.749 3 N -0.446 5.446 4 C 0.043 3.957 5 N 0.066 4.934 6 O -0.133 6.133 7 O -0.161 6.161 8 C 0.064 3.936 9 N -0.443 5.443 10 C 0.110 3.890 11 C -0.136 4.136 12 C 0.464 3.536 13 O -0.511 6.511 14 O -0.345 6.345 15 C 0.079 3.921 16 C -0.059 4.059 17 C -0.126 4.126 18 C -0.127 4.127 19 C 0.036 3.964 20 C -0.513 4.513 21 H 0.061 0.939 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.208 0.792 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 19.417 9.392 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.014 4.014 3 N -0.167 5.167 4 C -0.166 4.166 5 N 0.588 4.412 6 O -0.354 6.354 7 O -0.372 6.372 8 C -0.078 4.078 9 N -0.125 5.125 10 C -0.011 4.011 11 C -0.175 4.175 12 C 0.306 3.694 13 O -0.401 6.401 14 O -0.261 6.261 15 C 0.007 3.993 16 C -0.059 4.059 17 C -0.184 4.184 18 C -0.184 4.184 19 C -0.002 4.002 20 C -0.551 4.551 21 H 0.079 0.921 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.225 0.775 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.201 19.228 9.726 21.953 hybrid contribution 0.412 -1.198 -0.789 1.492 sum 4.612 18.030 8.937 20.645 Atomic orbital electron populations 1.20457 0.82581 1.05494 1.05021 1.23595 0.96435 0.79256 1.02145 1.69746 0.98816 1.29035 1.19081 1.20601 0.87886 0.87544 1.20559 1.42255 1.00465 1.00909 0.97617 1.94592 1.92548 0.96111 1.52163 1.94572 1.07397 1.80628 1.54582 1.22425 0.89076 0.93961 1.02309 1.45772 1.05364 1.08946 1.52435 1.21962 1.04692 0.76917 0.97507 1.21645 1.05765 0.92273 0.97791 1.22908 0.74757 0.88994 0.82741 1.90713 1.49563 1.66594 1.33200 1.86490 1.75972 1.30475 1.33141 1.23624 0.99432 0.75572 1.00700 1.20844 0.96161 0.98904 0.90027 1.21724 0.97300 0.97370 1.01973 1.21727 0.96292 0.99245 1.01138 1.19123 0.96399 0.86695 0.97935 1.21090 1.44748 0.96774 0.92486 0.92119 1.25017 0.95671 0.97048 0.96749 1.69948 1.46768 1.07181 1.29477 0.86660 0.78759 0.77884 0.84722 1.20235 1.21336 1.20231 0.88714 0.87849 0.89476 0.77492 0.86330 0.86405 0.86573 0.86623 0.91326 0.91311 0.94295 0.91415 0.93698 0.93704 0.91406 0.94287 0.96332 0.96323 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.04 36.01 0.36 0.10 16 2 C 0.25 1.73 7.90 -155.42 -1.23 0.50 16 3 N -0.45 -4.72 11.23 -7.88 -0.09 -4.80 16 4 C 0.04 0.45 8.02 -145.54 -1.17 -0.71 16 5 N 0.07 0.81 4.45 32.62 0.15 0.96 16 6 O -0.13 -1.84 19.24 -29.46 -0.57 -2.41 16 7 O -0.16 -1.93 19.02 -29.46 -0.56 -2.49 16 8 C 0.06 0.44 11.25 -16.56 -0.19 0.25 16 9 N -0.44 -2.48 2.75 -113.91 -0.31 -2.80 16 10 C 0.11 0.46 4.97 -4.05 -0.02 0.44 16 11 C -0.14 -0.72 6.13 -27.89 -0.17 -0.89 16 12 C 0.46 4.72 7.96 36.01 0.29 5.01 16 13 O -0.51 -6.52 15.73 -18.75 -0.29 -6.81 16 14 O -0.35 -4.47 8.88 -39.27 -0.35 -4.82 16 15 C 0.08 1.26 4.32 37.16 0.16 1.42 16 16 C -0.06 -1.08 0.61 -154.51 -0.09 -1.17 16 17 C -0.13 -2.16 8.08 37.16 0.30 -1.86 16 18 C -0.13 -2.18 8.08 37.16 0.30 -1.88 16 19 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 20 C -0.51 -13.15 7.65 -34.44 -0.26 -13.42 16 21 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 22 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 23 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 24 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.15 7.36 -51.93 -0.38 -0.23 16 31 H 0.21 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.41 7.88 -51.93 -0.41 0.00 16 33 H 0.12 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.12 0.45 7.67 -51.93 -0.40 0.05 16 36 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 37 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.04 0.57 7.68 -51.93 -0.40 0.17 16 39 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 43 H 0.04 0.58 7.68 -51.93 -0.40 0.18 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -33.23 394.85 -9.05 -42.28 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -6.75 Total: -5.76 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.93 Total: -10.06 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.48 Total: -31.43 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.77 Total: -16.53 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.23 -9.05 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195043860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.067 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds