Wall clock time and date at job start Sat Apr 11 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30496 * 125.65289 * 2 1 4 4 C 1.34126 * 109.26058 * 179.97438 * 3 2 1 5 5 N 1.48028 * 125.99152 * 179.97438 * 4 3 2 6 6 O 1.21798 * 119.99740 * 0.02562 * 5 4 3 7 7 O 1.21798 * 119.99717 * 180.02562 * 5 4 3 8 8 C 1.34666 * 108.01727 * 359.72411 * 4 3 2 9 9 N 1.35043 * 125.64775 * 179.97438 * 2 1 3 10 10 C 1.46498 * 126.40137 * 0.02562 * 9 2 1 11 11 C 1.52992 * 109.47364 * 84.99694 * 10 9 2 12 12 C 1.50702 * 109.47263 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99854 * 359.72154 * 12 11 10 14 14 O 1.34234 * 119.99997 * 179.97438 * 12 11 10 15 15 C 1.45199 * 116.99947 * 179.72219 * 14 12 11 16 16 C 1.53003 * 109.46980 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47295 * 300.00004 * 16 15 14 18 18 C 1.52996 * 109.46723 * 60.00112 * 16 15 14 19 19 C 1.52999 * 109.46725 * 180.02562 * 16 15 14 20 20 C 1.50707 * 109.46730 * 180.02562 * 19 16 15 21 21 H 1.07993 * 120.00041 * 359.97438 * 20 19 16 22 22 C 1.37878 * 119.99770 * 179.97438 * 20 19 16 23 23 N 1.31516 * 119.99976 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46920 * 60.00473 * 24 22 20 26 26 H 1.48500 * 109.47164 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47273 * 300.00423 * 24 22 20 28 28 H 1.08997 * 109.47383 * 270.00492 * 1 2 3 29 29 H 1.08998 * 109.46946 * 30.01091 * 1 2 3 30 30 H 1.09001 * 109.46962 * 150.00498 * 1 2 3 31 31 H 1.08002 * 126.59444 * 180.26523 * 8 4 3 32 32 H 1.09001 * 109.46865 * 324.99115 * 10 9 2 33 33 H 1.09001 * 109.47115 * 204.99594 * 10 9 2 34 34 H 1.09001 * 109.47602 * 59.99873 * 11 10 9 35 35 H 1.09001 * 109.46922 * 300.00018 * 11 10 9 36 36 H 1.08997 * 109.46967 * 299.99772 * 15 14 12 37 37 H 1.09002 * 109.46640 * 59.99976 * 15 14 12 38 38 H 1.09003 * 109.46899 * 60.00092 * 17 16 15 39 39 H 1.08997 * 109.47216 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.47450 * 300.00471 * 17 16 15 41 41 H 1.09002 * 109.47098 * 60.00096 * 18 16 15 42 42 H 1.09006 * 109.46719 * 179.97438 * 18 16 15 43 43 H 1.08999 * 109.47654 * 299.99443 * 18 16 15 44 44 H 1.08997 * 109.46920 * 299.99829 * 19 16 15 45 45 H 1.08991 * 109.47398 * 60.00345 * 19 16 15 46 46 H 0.96998 * 119.99385 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 0.0006 5 7 4.7269 1.5854 0.0002 6 8 4.5655 2.7926 -0.0002 7 8 5.8531 1.1215 0.0003 8 6 3.5926 -0.6643 0.0071 9 7 2.2940 -1.0974 0.0005 10 6 1.8425 -2.4910 0.0006 11 6 1.5662 -2.9377 -1.4363 12 6 1.1011 -4.3712 -1.4362 13 8 1.0058 -4.9752 -0.3941 14 8 0.7977 -4.9785 -2.5942 15 6 0.3624 -6.3617 -2.5188 16 6 0.0632 -6.8796 -3.9271 17 6 -1.0421 -6.0308 -4.5585 18 6 1.3280 -6.7888 -4.7832 19 6 -0.3960 -8.3369 -3.8476 20 6 -0.6901 -8.8472 -5.2348 21 1 -0.5626 -8.1971 -6.0876 22 6 -1.1218 -10.1442 -5.4150 23 7 -1.2775 -10.9358 -4.3764 24 14 -1.4871 -10.7765 -7.1343 25 1 -0.2594 -10.6884 -7.9653 26 1 -1.9315 -12.1914 -7.0574 27 1 -2.5599 -9.9527 -7.7473 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 4.4776 -1.2832 0.0133 32 1 0.9296 -2.5771 0.5899 33 1 2.6165 -3.1237 0.4352 34 1 2.4791 -2.8517 -2.0256 35 1 0.7923 -2.3051 -1.8710 36 1 1.1497 -6.9663 -2.0686 37 1 -0.5389 -6.4262 -1.9092 38 1 -0.7153 -4.9925 -4.6151 39 1 -1.2549 -6.3995 -5.5619 40 1 -1.9431 -6.0954 -3.9486 41 1 2.1155 -7.3935 -4.3333 42 1 1.1150 -7.1582 -5.7864 43 1 1.6548 -5.7505 -4.8398 44 1 0.3912 -8.9418 -3.3976 45 1 -1.2971 -8.4011 -3.2378 46 1 -1.5809 -11.8483 -4.5033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195043860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:57 Heat of formation + Delta-G solvation = -62.014106 kcal Electronic energy + Delta-G solvation = -28663.904885 eV Core-core repulsion = 24364.305966 eV Total energy + Delta-G solvation = -4299.598919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.13690 -42.85321 -41.60881 -38.88651 -37.67988 -37.03592 -36.34340 -34.41507 -33.34528 -32.33176 -29.53165 -29.31691 -28.17844 -27.95372 -27.17004 -25.72817 -24.76662 -22.93369 -22.04732 -21.38457 -20.13784 -19.92618 -19.58524 -18.88707 -18.75551 -18.34736 -17.77911 -17.62891 -17.13881 -16.58343 -16.51204 -15.89502 -15.59604 -15.09693 -15.00972 -14.76392 -14.57228 -14.18679 -13.96644 -13.86156 -13.70511 -13.51228 -13.28710 -12.95838 -12.80491 -12.77707 -12.66663 -12.57616 -12.55307 -12.34149 -12.30704 -12.24477 -11.99819 -11.84084 -11.76169 -11.66648 -11.41330 -11.35335 -11.02183 -10.89970 -10.52125 -10.22585 -8.16353 -6.23613 -0.96512 0.05808 0.45399 1.07333 1.11898 1.40119 1.42909 1.44042 1.51389 1.78852 2.43558 2.99149 3.18468 3.20527 3.32784 3.48932 3.62458 3.76618 3.93031 3.95321 4.12189 4.20952 4.23636 4.30086 4.54198 4.57053 4.60986 4.62565 4.63809 4.68095 4.73640 5.01007 5.01373 5.09756 5.14286 5.24018 5.43239 5.46860 5.47411 5.51740 5.53527 5.54582 5.75234 5.87588 6.09807 6.28058 6.62481 6.64454 6.90404 7.44071 8.95629 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.001731 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.815528 B =16170.615341 C =16411.986465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.261 3.739 3 N -0.495 5.495 4 C 0.006 3.994 5 N 0.068 4.932 6 O -0.201 6.201 7 O -0.145 6.145 8 C 0.096 3.904 9 N -0.434 5.434 10 C 0.112 3.888 11 C -0.124 4.124 12 C 0.466 3.534 13 O -0.538 6.538 14 O -0.347 6.347 15 C 0.092 3.908 16 C -0.057 4.057 17 C -0.120 4.120 18 C -0.121 4.121 19 C 0.039 3.961 20 C -0.516 4.516 21 H 0.070 0.930 22 C -0.003 4.003 23 N -0.936 5.936 24 Si 0.957 3.043 25 H -0.268 1.268 26 H -0.290 1.290 27 H -0.267 1.267 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.241 0.759 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.068 0.932 44 H -0.010 1.010 45 H -0.009 1.009 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.060 19.788 8.641 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 N -0.216 5.216 4 C -0.203 4.203 5 N 0.583 4.417 6 O -0.406 6.406 7 O -0.363 6.363 8 C -0.048 4.048 9 N -0.115 5.115 10 C -0.008 4.008 11 C -0.162 4.162 12 C 0.309 3.691 13 O -0.428 6.428 14 O -0.263 6.263 15 C 0.018 3.982 16 C -0.057 4.057 17 C -0.177 4.177 18 C -0.178 4.178 19 C 0.002 3.998 20 C -0.554 4.554 21 H 0.088 0.912 22 C -0.200 4.200 23 N -0.576 5.576 24 Si 0.782 3.218 25 H -0.193 1.193 26 H -0.216 1.216 27 H -0.192 1.192 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.257 0.743 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.008 0.992 45 H 0.010 0.990 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.084 19.748 8.968 22.070 hybrid contribution 0.435 -1.420 -0.479 1.561 sum 4.519 18.328 8.489 20.698 Atomic orbital electron populations 1.20690 0.80174 1.06633 1.06253 1.24203 0.97505 0.78725 0.99981 1.69664 0.99438 1.31209 1.21250 1.20700 0.87306 0.88231 1.24021 1.42560 1.01195 1.01005 0.96904 1.94590 1.92896 0.97402 1.55753 1.94513 1.08439 1.80379 1.52989 1.22938 0.90437 0.92685 0.98754 1.45878 1.04725 1.09280 1.51616 1.22096 1.05773 0.75825 0.97103 1.21701 1.07026 0.88595 0.98885 1.23784 0.73536 0.90355 0.81386 1.90719 1.50604 1.67599 1.33878 1.86461 1.76415 1.28539 1.34839 1.23100 0.98988 0.77541 0.98568 1.20630 0.97136 0.95800 0.92134 1.21652 0.96721 0.98727 1.00631 1.21658 0.95477 1.00952 0.99709 1.18984 0.94321 0.90211 0.96250 1.21518 1.43282 0.96827 0.93747 0.91178 1.25905 0.95924 0.97654 1.00522 1.70091 1.48400 1.07449 1.31705 0.85621 0.78961 0.77028 0.80173 1.19297 1.21632 1.19208 0.87368 0.87904 0.87097 0.74256 0.85063 0.85322 0.84863 0.84429 0.92224 0.92000 0.91208 0.93016 0.94096 0.94264 0.92978 0.91269 0.99161 0.99031 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.04 71.24 0.71 0.44 16 2 C 0.26 2.91 7.90 138.13 1.09 4.00 16 3 N -0.49 -10.02 11.23 -178.84 -2.01 -12.03 16 4 C 0.01 0.11 8.02 128.16 1.03 1.14 16 5 N 0.07 1.72 4.45 -50.71 -0.23 1.49 16 6 O -0.20 -6.01 19.24 18.89 0.36 -5.65 16 7 O -0.15 -3.40 19.02 18.89 0.36 -3.04 16 8 C 0.10 1.00 11.25 83.08 0.93 1.93 16 9 N -0.43 -3.19 2.75 -514.30 -1.42 -4.61 16 10 C 0.11 0.42 4.97 86.38 0.43 0.85 16 11 C -0.12 -0.69 6.13 29.85 0.18 -0.51 16 12 C 0.47 7.80 7.96 71.24 0.57 8.37 16 13 O -0.54 -12.26 15.73 21.98 0.35 -11.91 16 14 O -0.35 -7.85 8.88 -51.46 -0.46 -8.30 16 15 C 0.09 2.79 4.32 71.98 0.31 3.10 16 16 C -0.06 -2.02 0.61 -52.18 -0.03 -2.05 16 17 C -0.12 -3.88 8.08 71.98 0.58 -3.29 16 18 C -0.12 -3.95 8.08 71.98 0.58 -3.37 16 19 C 0.04 1.89 4.04 29.85 0.12 2.01 16 20 C -0.52 -26.62 7.65 25.60 0.20 -26.42 16 21 H 0.07 3.42 5.68 -2.91 -0.02 3.40 16 22 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 23 N -0.94 -54.66 13.29 21.45 0.28 -54.38 16 24 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 -0.13 7.36 -2.39 -0.02 -0.15 16 31 H 0.24 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.13 0.28 7.88 -2.39 -0.02 0.26 16 33 H 0.13 0.33 8.09 -2.39 -0.02 0.31 16 34 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.14 0.28 7.67 -2.39 -0.02 0.26 16 36 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 37 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 38 H 0.07 1.81 7.68 -2.39 -0.02 1.80 16 39 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.85 6.62 -2.38 -0.02 1.83 16 43 H 0.07 1.84 7.68 -2.39 -0.02 1.82 16 44 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -76.41 394.85 7.43 -68.98 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: 0.99 Total: -1.26 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 7.17 Total: -13.51 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -3.36 Total: -69.53 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: 0.61 Total: -28.91 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -76.41 7.43 -68.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195043860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.966 kcal (2) G-P(sol) polarization free energy of solvation -76.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds