Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28598 * 124.61789 * 2 1 4 4 C 1.31377 * 108.71899 * 180.02562 * 3 2 1 5 5 C 1.39676 * 105.90043 * 359.97438 * 4 3 2 6 6 C 1.50706 * 127.04749 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46517 * 95.00526 * 6 5 4 8 8 C 1.46901 * 110.99519 * 175.30093 * 7 6 5 9 9 C 1.52992 * 112.85109 * 290.69147 * 8 7 6 10 10 N 1.46507 * 109.47424 * 312.17793 * 9 8 7 11 11 C 1.34775 * 119.99985 * 174.70238 * 10 9 8 12 12 O 1.21278 * 120.00248 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99711 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.47048 * 180.02562 * 13 11 10 15 15 C 1.76201 * 99.99868 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.38799 * 119.99914 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00304 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46957 * 59.99810 * 19 17 15 21 21 H 1.48495 * 109.47014 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46948 * 300.00163 * 19 17 15 23 23 C 1.53787 * 113.61126 * 159.38566 * 8 7 6 24 24 C 1.53780 * 87.08068 * 220.01823 * 23 8 7 25 25 C 1.53776 * 113.61604 * 61.89079 * 8 7 6 26 26 N 1.28601 * 124.62169 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46905 * 269.95562 * 1 2 3 28 28 H 1.08991 * 109.47323 * 29.95734 * 1 2 3 29 29 H 1.09006 * 109.47210 * 149.96060 * 1 2 3 30 30 H 1.08001 * 127.05112 * 180.02562 * 4 3 2 31 31 H 1.08994 * 109.46942 * 214.99840 * 6 5 4 32 32 H 1.08994 * 109.47089 * 335.00583 * 6 5 4 33 33 H 1.00899 * 111.00105 * 299.25697 * 7 6 5 34 34 H 1.08999 * 109.47144 * 72.17947 * 9 8 7 35 35 H 1.09004 * 109.47626 * 192.17958 * 9 8 7 36 36 H 0.97001 * 119.99710 * 354.70553 * 10 9 8 37 37 H 1.09007 * 109.47120 * 300.00436 * 13 11 10 38 38 H 1.08998 * 109.46914 * 59.99991 * 13 11 10 39 39 H 0.97003 * 120.00395 * 179.97438 * 18 17 15 40 40 H 1.08996 * 113.61180 * 334.56696 * 23 8 7 41 41 H 1.08996 * 113.61473 * 105.47022 * 23 8 7 42 42 H 1.08996 * 113.61736 * 270.88664 * 24 23 8 43 43 H 1.08997 * 113.61609 * 139.97992 * 24 23 8 44 44 H 1.09003 * 113.61692 * 254.53070 * 25 8 7 45 45 H 1.09004 * 113.61745 * 25.42795 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6984 -0.0006 5 6 3.4591 -0.6983 -0.0003 6 6 4.6620 -1.6063 -0.0013 7 7 4.9812 -1.9974 1.3783 8 6 6.0802 -2.9717 1.4082 9 6 5.6797 -4.3367 0.8454 10 7 4.4053 -4.7536 1.4357 11 6 3.8007 -5.8796 1.0079 12 8 4.3119 -6.5481 0.1346 13 6 2.4901 -6.3087 1.6156 14 16 1.9388 -7.8467 0.8367 15 6 0.4322 -8.1098 1.7118 16 1 0.1186 -7.4078 2.4703 17 6 -0.3521 -9.2186 1.4255 18 7 0.0299 -10.0739 0.5008 19 14 -1.9496 -9.4972 2.3527 20 1 -2.8601 -8.3459 2.1271 21 1 -2.5948 -10.7423 1.8642 22 1 -1.6636 -9.6251 3.8043 23 6 6.7974 -3.0496 2.7664 24 6 8.1117 -3.1690 1.9769 25 6 7.3991 -2.4305 0.8316 26 7 2.1956 -1.0583 -0.0005 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3633 0.8903 -0.5131 29 1 -0.3634 -0.8897 -0.5145 30 1 4.3210 1.3491 -0.0003 31 1 4.4442 -2.4971 -0.5903 32 1 5.5126 -1.0819 -0.4364 33 1 5.1987 -1.1894 1.9421 34 1 5.5729 -4.2662 -0.2371 35 1 6.4492 -5.0697 1.0875 36 1 3.9966 -4.2191 2.1344 37 1 2.6214 -6.4704 2.6856 38 1 1.7433 -5.5313 1.4546 39 1 -0.5180 -10.8491 0.3010 40 1 6.7221 -2.1341 3.3530 41 1 6.5501 -3.9427 3.3401 42 1 8.3824 -4.1961 1.7323 43 1 8.9361 -2.6054 2.4135 44 1 7.6375 -2.8237 -0.1567 45 1 7.4883 -1.3457 0.8893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733712946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = 69.488871 kcal Electronic energy + Delta-G solvation = -26778.475064 eV Core-core repulsion = 22959.624164 eV Total energy + Delta-G solvation = -3818.850900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.47489 -41.23974 -39.96681 -36.01064 -35.26274 -34.57834 -33.99955 -33.17823 -31.28999 -29.28307 -27.92767 -27.43068 -26.88389 -26.03233 -23.48014 -23.09375 -21.83573 -21.60444 -20.12242 -19.47081 -18.16283 -17.85203 -17.70418 -17.49512 -17.01186 -16.87454 -16.38530 -16.16174 -15.71066 -15.59190 -15.49231 -14.85538 -14.60335 -14.52271 -14.35272 -14.25042 -13.80023 -13.64624 -13.45443 -13.16556 -13.13055 -13.09675 -12.86402 -12.71019 -12.60745 -12.22824 -11.80873 -11.75175 -11.72848 -11.50166 -11.31326 -11.13649 -11.12559 -10.91057 -10.27677 -10.14649 -9.98425 -9.31212 -8.65551 -8.33830 -6.11860 0.86283 1.27444 1.43221 1.43698 1.47129 1.52933 1.57509 1.67416 2.27374 2.35449 2.99762 3.12021 3.27922 3.36745 3.55466 3.66178 3.70002 3.91839 3.97887 4.08580 4.17916 4.28140 4.29972 4.33731 4.50266 4.51611 4.52995 4.57734 4.61881 4.66978 4.78418 4.87834 4.93075 5.13720 5.15084 5.18888 5.21545 5.27879 5.41517 5.44170 5.54532 5.78128 6.00716 6.20103 6.51434 6.61405 7.06867 7.31744 7.40121 8.75287 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008914 B = 0.003105 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.277173 B = 9016.706773 C =11563.990549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.167 5.167 3 N -0.312 5.312 4 C -0.019 4.019 5 C -0.002 4.002 6 C 0.157 3.843 7 N -0.673 5.673 8 C 0.089 3.911 9 C 0.151 3.849 10 N -0.695 5.695 11 C 0.532 3.468 12 O -0.571 6.571 13 C -0.126 4.126 14 S -0.147 6.147 15 C -0.548 4.548 16 H 0.080 0.920 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.155 4.155 26 N -0.302 5.302 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.229 0.771 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.359 0.641 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.416 0.584 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.271 0.729 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 27.176 4.073 30.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.068 5.068 3 N -0.153 5.153 4 C -0.202 4.202 5 C -0.166 4.166 6 C 0.026 3.974 7 N -0.306 5.306 8 C -0.002 4.002 9 C 0.026 3.974 10 N -0.348 5.348 11 C 0.318 3.682 12 O -0.450 6.450 13 C -0.277 4.277 14 S 0.080 5.920 15 C -0.696 4.696 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.163 4.163 24 C -0.176 4.176 25 C -0.195 4.195 26 N -0.145 5.145 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.245 0.755 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.180 0.820 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.253 0.747 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.954 25.487 2.567 27.859 hybrid contribution -0.271 0.863 1.182 1.488 sum 10.683 26.350 3.748 28.679 Atomic orbital electron populations 1.22441 0.68670 1.06894 1.06160 1.48341 1.09975 0.98929 1.49602 1.73992 1.04756 1.16667 1.19865 1.25183 0.94952 0.94542 1.05490 1.23319 0.92435 0.94441 1.06363 1.19940 0.90712 0.95785 0.90920 1.59970 1.42119 1.17773 1.10725 1.22398 0.88437 0.90837 0.98573 1.21088 0.84867 0.94258 0.97181 1.45507 1.23523 1.24199 1.41579 1.19996 0.85449 0.80937 0.81858 1.90670 1.66483 1.55167 1.32667 1.23322 0.97705 1.02388 1.04317 1.85496 1.27262 1.25847 1.53349 1.23173 1.07885 1.13338 1.25227 0.90178 1.26125 1.02442 0.94341 0.96134 1.70179 1.39822 1.13037 1.31719 0.85013 0.76565 0.77985 0.78480 1.18679 1.20214 1.18632 1.23137 0.94976 1.03376 0.94805 1.22751 0.97040 1.00981 0.96830 1.23598 0.94996 1.01693 0.99189 1.74125 1.04993 1.16502 1.18916 0.88058 0.86108 0.87711 0.75457 0.91927 0.89745 0.82023 0.92925 0.91531 0.74724 0.87649 0.88180 0.91961 0.87768 0.91787 0.90730 0.89592 0.91283 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 11.57 127.77 1.48 2.81 16 2 N -0.17 -3.69 4.35 -206.56 -0.90 -4.59 16 3 N -0.31 -6.56 12.05 -56.87 -0.69 -7.25 16 4 C -0.02 -0.32 12.16 85.11 1.03 0.72 16 5 C 0.00 -0.05 6.91 42.98 0.30 0.25 16 6 C 0.16 2.56 5.89 85.56 0.50 3.06 16 7 N -0.67 -9.54 5.76 -471.54 -2.72 -12.26 16 8 C 0.09 1.26 0.80 4.05 0.00 1.27 16 9 C 0.15 3.52 4.62 86.38 0.40 3.92 16 10 N -0.70 -19.76 5.38 -463.06 -2.49 -22.25 16 11 C 0.53 21.23 7.85 87.66 0.69 21.91 16 12 O -0.57 -27.77 15.86 -3.02 -0.05 -27.82 16 13 C -0.13 -5.42 6.16 71.24 0.44 -4.98 16 14 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 15 C -0.55 -32.34 9.50 67.95 0.65 -31.69 16 16 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 17 C 0.01 0.83 5.49 84.86 0.47 1.30 16 18 N -0.91 -57.02 13.22 21.65 0.29 -56.73 16 19 Si 1.00 44.42 29.55 68.60 2.03 46.44 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 C -0.13 -1.44 7.33 31.12 0.23 -1.21 16 24 C -0.14 -1.43 7.73 31.12 0.24 -1.19 16 25 C -0.15 -1.53 6.44 31.12 0.20 -1.33 16 26 N -0.30 -7.83 12.05 -47.25 -0.57 -8.40 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.23 1.76 8.06 -2.91 -0.02 1.73 16 31 H 0.06 1.42 6.97 -2.39 -0.02 1.40 16 32 H 0.08 0.87 7.54 -2.39 -0.02 0.85 16 33 H 0.36 3.62 8.51 -89.69 -0.76 2.86 16 34 H 0.05 1.41 7.40 -2.39 -0.02 1.39 16 35 H 0.07 1.63 7.36 -2.38 -0.02 1.61 16 36 H 0.42 10.26 8.10 -92.71 -0.75 9.51 16 37 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 38 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 39 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.10 0.84 7.95 -2.39 -0.02 0.82 16 41 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 42 H 0.07 0.95 7.67 -2.39 -0.02 0.94 16 43 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 45 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -84.32 391.41 -0.12 -84.44 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.49 Total: 23.21 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.62 Total: -5.17 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -7.07 Total: -111.47 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -84.32 -0.12 -84.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733712946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.929 kcal (2) G-P(sol) polarization free energy of solvation -84.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds