Wall clock time and date at job start Sat Apr 11 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28593 * 124.61784 * 2 1 4 4 C 1.31384 * 108.71783 * 180.19300 * 3 2 1 5 5 C 1.39679 * 105.89641 * 359.60360 * 4 3 2 6 6 C 1.50705 * 127.04833 * 180.21817 * 5 4 3 7 7 N 1.46901 * 109.46946 * 95.00307 * 6 5 4 8 8 C 1.46901 * 110.99628 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46859 * 180.02562 * 8 7 6 10 10 C 1.53784 * 113.61239 * 274.13135 * 9 8 7 11 11 C 1.53955 * 87.02105 * 220.04705 * 10 9 8 12 12 N 1.46503 * 113.54169 * 270.81437 * 11 10 9 13 13 C 1.34776 * 120.00100 * 252.49910 * 12 11 10 14 14 O 1.21287 * 119.99555 * 359.97438 * 13 12 11 15 15 C 1.50692 * 119.99980 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.47058 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00084 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99619 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99907 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00347 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99746 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47425 * 120.00120 * 21 19 17 24 24 H 1.48503 * 109.46873 * 239.99988 * 21 19 17 25 25 C 1.53778 * 87.10967 * 25.36612 * 11 10 9 26 26 N 1.28608 * 124.61541 * 179.74883 * 2 1 3 27 27 H 1.08991 * 109.47473 * 270.24844 * 1 2 3 28 28 H 1.08997 * 109.46747 * 30.25122 * 1 2 3 29 29 H 1.09003 * 109.47146 * 150.24488 * 1 2 3 30 30 H 1.08002 * 127.05419 * 179.87291 * 4 3 2 31 31 H 1.08998 * 109.47264 * 215.00757 * 6 5 4 32 32 H 1.09004 * 109.47028 * 335.00201 * 6 5 4 33 33 H 1.00898 * 110.99749 * 303.95102 * 7 6 5 34 34 H 1.09003 * 109.47332 * 299.99940 * 8 7 6 35 35 H 1.08998 * 109.47588 * 59.99821 * 8 7 6 36 36 H 1.08993 * 112.85221 * 45.32952 * 9 8 7 37 37 H 1.08998 * 113.61676 * 334.57104 * 10 9 8 38 38 H 1.09005 * 113.61312 * 105.47440 * 10 9 8 39 39 H 1.09003 * 113.74145 * 139.94678 * 11 10 9 40 40 H 0.96996 * 120.00051 * 72.48815 * 12 11 10 41 41 H 1.08991 * 109.47290 * 299.99222 * 15 13 12 42 42 H 1.08995 * 109.47436 * 60.00056 * 15 13 12 43 43 H 0.96993 * 120.00096 * 179.97438 * 20 19 17 44 44 H 1.09004 * 113.61393 * 220.08586 * 25 11 10 45 45 H 1.08998 * 113.61701 * 89.18718 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6983 -0.0042 5 6 3.4590 -0.6984 0.0024 6 6 4.6618 -1.6065 0.0057 7 7 4.9810 -1.9913 1.3870 8 6 6.1514 -2.8782 1.4292 9 6 6.4519 -3.2571 2.8808 10 6 7.3373 -2.2353 3.6135 11 6 8.0553 -3.4371 4.2540 12 7 7.4448 -3.8825 5.5091 13 6 8.0647 -3.6442 6.6818 14 8 9.1282 -3.0613 6.6981 15 6 7.4364 -4.1019 7.9728 16 16 8.5023 -3.6380 9.3603 17 6 7.5536 -4.2751 10.7014 18 1 6.6149 -4.7737 10.5098 19 6 8.0126 -4.1361 12.0039 20 7 9.1569 -3.5289 12.2372 21 14 7.0070 -4.8122 13.4256 22 1 5.7706 -5.4452 12.9005 23 1 7.8075 -5.8237 14.1612 24 1 6.6432 -3.7045 14.3454 25 6 7.6125 -4.2550 3.0293 26 7 2.1956 -1.0584 0.0046 27 1 -0.3634 0.0045 1.0275 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 4.3211 1.3490 -0.0072 31 1 4.4442 -2.4999 -0.5794 32 1 5.5126 -1.0841 -0.4318 33 1 5.1237 -1.1770 1.9654 34 1 5.9444 -3.7806 0.8539 35 1 7.0123 -2.3643 1.0018 36 1 5.5589 -3.5400 3.4380 37 1 7.9726 -1.6512 2.9477 38 1 6.7925 -1.6191 4.3289 39 1 9.1357 -3.3137 4.3293 40 1 6.5944 -4.3489 5.4960 41 1 6.4612 -3.6294 8.0898 42 1 7.3156 -5.1849 7.9542 43 1 9.4774 -3.4315 13.1475 44 1 7.2897 -5.2671 3.2736 45 1 8.3233 -4.2242 2.2035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733944420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:51 Heat of formation + Delta-G solvation = 94.210618 kcal Electronic energy + Delta-G solvation = -25178.320154 eV Core-core repulsion = 21360.541269 eV Total energy + Delta-G solvation = -3817.778885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.90836 -40.15693 -38.26195 -36.44520 -34.08253 -33.09533 -32.65331 -32.41682 -29.81956 -28.85090 -27.10529 -25.90992 -25.48833 -24.82771 -22.66149 -22.29844 -21.31116 -20.75917 -19.20519 -17.84163 -17.64187 -17.21571 -16.69386 -16.20021 -15.96147 -15.31857 -15.29672 -14.88982 -14.81133 -14.79435 -14.31651 -13.87621 -13.74821 -13.54825 -13.31180 -13.15020 -13.07979 -12.95287 -12.64496 -12.50846 -12.14141 -11.65000 -11.59241 -11.16273 -11.10059 -11.06274 -11.00831 -10.74768 -10.67619 -10.56397 -10.28493 -9.78928 -9.62173 -9.38661 -9.06733 -8.83563 -8.81714 -8.21942 -6.48707 -6.20838 -3.91118 1.43650 1.93198 1.99708 3.03810 3.08773 3.22354 3.29026 3.33848 3.63330 3.72170 3.85759 4.21325 4.33687 4.38048 4.47685 4.52858 4.54316 4.71275 4.76004 4.77721 4.80768 4.98353 5.11421 5.14470 5.15988 5.21705 5.31544 5.44063 5.52315 5.57241 5.60824 5.71272 5.76264 5.87235 5.89695 5.91246 5.96560 6.14188 6.16932 6.29067 6.59544 6.74811 6.97544 7.61059 7.74470 7.95656 8.36571 8.63838 9.24710 10.86667 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.001669 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.285425 B =16769.054658 C =18108.235137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.160 5.160 3 N -0.291 5.291 4 C -0.022 4.022 5 C 0.003 3.997 6 C 0.149 3.851 7 N -0.684 5.684 8 C 0.071 3.929 9 C -0.108 4.108 10 C -0.152 4.152 11 C 0.125 3.875 12 N -0.721 5.721 13 C 0.534 3.466 14 O -0.517 6.517 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.140 4.140 26 N -0.269 5.269 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.196 0.804 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.345 0.655 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.074 0.926 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 3.974 -29.736 32.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.061 5.061 3 N -0.132 5.132 4 C -0.205 4.205 5 C -0.160 4.160 6 C 0.018 3.982 7 N -0.316 5.316 8 C -0.058 4.058 9 C -0.127 4.127 10 C -0.191 4.191 11 C 0.019 3.981 12 N -0.374 5.374 13 C 0.321 3.679 14 O -0.391 6.391 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.179 4.179 26 N -0.112 5.112 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.213 0.787 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.674 4.498 -29.557 32.876 hybrid contribution -0.797 -0.575 0.745 1.234 sum -14.471 3.923 -28.811 32.479 Atomic orbital electron populations 1.22135 0.70187 1.05777 1.05124 1.47967 1.08961 0.99386 1.49736 1.74054 1.03945 1.16169 1.19039 1.24683 0.94560 0.94745 1.06480 1.23019 0.92654 0.93692 1.06655 1.20049 0.90382 0.96601 0.91157 1.60413 1.39821 1.22205 1.09134 1.21967 0.90426 0.96693 0.96700 1.22627 0.97589 0.97109 0.95350 1.23570 0.98795 0.97059 0.99711 1.21714 0.98793 0.94497 0.83134 1.45703 1.25362 1.61218 1.05115 1.20323 0.84844 0.78286 0.84481 1.90697 1.21610 1.39985 1.86802 1.23531 1.04991 1.04385 0.97513 1.85393 1.27990 1.76320 0.93683 1.22915 1.09299 1.43429 0.92668 0.90867 1.24993 0.95320 0.94993 0.98306 1.70026 1.19028 1.40048 1.21193 0.86117 0.79689 0.78651 0.81038 1.19616 1.20562 1.20581 1.23333 0.97953 0.98637 0.97960 1.74047 1.03642 1.15365 1.18109 0.89135 0.87967 0.87888 0.78726 0.89319 0.92788 0.83710 0.90726 0.94697 0.88355 0.89578 0.90899 0.88084 0.76748 0.89211 0.89194 0.92246 0.90709 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.43 11.57 59.85 0.69 1.13 16 2 N -0.16 -1.41 4.35 -16.64 -0.07 -1.48 16 3 N -0.29 -2.81 12.05 30.68 0.37 -2.44 16 4 C -0.02 -0.18 12.16 -17.21 -0.21 -0.39 16 5 C 0.00 0.03 6.87 -82.25 -0.56 -0.54 16 6 C 0.15 0.99 6.27 -4.97 -0.03 0.96 16 7 N -0.68 -5.09 6.49 -115.05 -0.75 -5.84 16 8 C 0.07 0.46 5.51 -3.82 -0.02 0.44 16 9 C -0.11 -0.83 3.77 -89.80 -0.34 -1.17 16 10 C -0.15 -1.43 7.44 -25.83 -0.19 -1.62 16 11 C 0.13 1.42 4.33 -67.03 -0.29 1.13 16 12 N -0.72 -9.57 5.26 -52.93 -0.28 -9.85 16 13 C 0.53 9.98 7.85 -10.99 -0.09 9.89 16 14 O -0.52 -11.76 15.46 5.55 0.09 -11.67 16 15 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C -0.14 -1.11 7.39 -25.92 -0.19 -1.30 16 26 N -0.27 -2.73 12.05 33.72 0.41 -2.32 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.34 2.59 8.72 -39.29 -0.34 2.24 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.03 0.20 7.88 -51.93 -0.41 -0.21 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.36 7.46 -51.93 -0.39 0.97 16 40 H 0.40 4.24 8.70 -40.82 -0.36 3.88 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -37.56 397.15 -8.51 -46.07 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.94 Total: 1.85 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.81 Total: -7.40 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.41 Total: -47.47 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.56 -8.51 -46.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733944420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.281 kcal (2) G-P(sol) polarization free energy of solvation -37.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds