Wall clock time and date at job start Sat Apr 11 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28593 * 124.61784 * 2 1 4 4 C 1.31384 * 108.71783 * 180.19300 * 3 2 1 5 5 C 1.39679 * 105.89641 * 359.60360 * 4 3 2 6 6 C 1.50705 * 127.04833 * 180.21817 * 5 4 3 7 7 N 1.46901 * 109.46946 * 95.00307 * 6 5 4 8 8 C 1.46901 * 110.99628 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46859 * 180.02562 * 8 7 6 10 10 C 1.53784 * 113.61239 * 274.13135 * 9 8 7 11 11 C 1.53955 * 87.02105 * 220.04705 * 10 9 8 12 12 N 1.46503 * 113.54169 * 270.81437 * 11 10 9 13 13 C 1.34776 * 120.00100 * 252.49910 * 12 11 10 14 14 O 1.21287 * 119.99555 * 359.97438 * 13 12 11 15 15 C 1.50692 * 119.99980 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.47058 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00084 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99619 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99907 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00347 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99746 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47425 * 120.00120 * 21 19 17 24 24 H 1.48503 * 109.46873 * 239.99988 * 21 19 17 25 25 C 1.53778 * 87.10967 * 25.36612 * 11 10 9 26 26 N 1.28608 * 124.61541 * 179.74883 * 2 1 3 27 27 H 1.08991 * 109.47473 * 270.24844 * 1 2 3 28 28 H 1.08997 * 109.46747 * 30.25122 * 1 2 3 29 29 H 1.09003 * 109.47146 * 150.24488 * 1 2 3 30 30 H 1.08002 * 127.05419 * 179.87291 * 4 3 2 31 31 H 1.08998 * 109.47264 * 215.00757 * 6 5 4 32 32 H 1.09004 * 109.47028 * 335.00201 * 6 5 4 33 33 H 1.00898 * 110.99749 * 303.95102 * 7 6 5 34 34 H 1.09003 * 109.47332 * 299.99940 * 8 7 6 35 35 H 1.08998 * 109.47588 * 59.99821 * 8 7 6 36 36 H 1.08993 * 112.85221 * 45.32952 * 9 8 7 37 37 H 1.08998 * 113.61676 * 334.57104 * 10 9 8 38 38 H 1.09005 * 113.61312 * 105.47440 * 10 9 8 39 39 H 1.09003 * 113.74145 * 139.94678 * 11 10 9 40 40 H 0.96996 * 120.00051 * 72.48815 * 12 11 10 41 41 H 1.08991 * 109.47290 * 299.99222 * 15 13 12 42 42 H 1.08995 * 109.47436 * 60.00056 * 15 13 12 43 43 H 0.96993 * 120.00096 * 179.97438 * 20 19 17 44 44 H 1.09004 * 113.61393 * 220.08586 * 25 11 10 45 45 H 1.08998 * 113.61701 * 89.18718 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6983 -0.0042 5 6 3.4590 -0.6984 0.0024 6 6 4.6618 -1.6065 0.0057 7 7 4.9810 -1.9913 1.3870 8 6 6.1514 -2.8782 1.4292 9 6 6.4519 -3.2571 2.8808 10 6 7.3373 -2.2353 3.6135 11 6 8.0553 -3.4371 4.2540 12 7 7.4448 -3.8825 5.5091 13 6 8.0647 -3.6442 6.6818 14 8 9.1282 -3.0613 6.6981 15 6 7.4364 -4.1019 7.9728 16 16 8.5023 -3.6380 9.3603 17 6 7.5536 -4.2751 10.7014 18 1 6.6149 -4.7737 10.5098 19 6 8.0126 -4.1361 12.0039 20 7 9.1569 -3.5289 12.2372 21 14 7.0070 -4.8122 13.4256 22 1 5.7706 -5.4452 12.9005 23 1 7.8075 -5.8237 14.1612 24 1 6.6432 -3.7045 14.3454 25 6 7.6125 -4.2550 3.0293 26 7 2.1956 -1.0584 0.0046 27 1 -0.3634 0.0045 1.0275 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 4.3211 1.3490 -0.0072 31 1 4.4442 -2.4999 -0.5794 32 1 5.5126 -1.0841 -0.4318 33 1 5.1237 -1.1770 1.9654 34 1 5.9444 -3.7806 0.8539 35 1 7.0123 -2.3643 1.0018 36 1 5.5589 -3.5400 3.4380 37 1 7.9726 -1.6512 2.9477 38 1 6.7925 -1.6191 4.3289 39 1 9.1357 -3.3137 4.3293 40 1 6.5944 -4.3489 5.4960 41 1 6.4612 -3.6294 8.0898 42 1 7.3156 -5.1849 7.9542 43 1 9.4774 -3.4315 13.1475 44 1 7.2897 -5.2671 3.2736 45 1 8.3233 -4.2242 2.2035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733944420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:51 Heat of formation + Delta-G solvation = 64.952432 kcal Electronic energy + Delta-G solvation = -25179.588884 eV Core-core repulsion = 21360.541269 eV Total energy + Delta-G solvation = -3819.047615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.49888 -41.20271 -39.44826 -37.07341 -34.76966 -34.58671 -34.06626 -33.38770 -30.94079 -29.77873 -27.80502 -27.56991 -26.61873 -25.47058 -23.25495 -22.99910 -22.11780 -21.86160 -20.10481 -19.82354 -18.19529 -17.92358 -17.78090 -17.11557 -16.99955 -16.88265 -16.41610 -16.06925 -15.82690 -15.73515 -15.42206 -14.86933 -14.72858 -14.46928 -14.30169 -14.06174 -13.81708 -13.61267 -13.50064 -13.41653 -13.28390 -13.16273 -12.91783 -12.61054 -12.53834 -12.16483 -11.82290 -11.77709 -11.69193 -11.41742 -11.26453 -11.16127 -11.02444 -10.93154 -10.27768 -10.17411 -10.00398 -9.30919 -8.66908 -8.35136 -6.13121 0.82226 1.26877 1.39811 1.41143 1.46881 1.52364 1.58269 1.60408 2.25595 2.30245 2.99017 3.13469 3.30871 3.32379 3.60615 3.77685 3.88164 3.92811 4.00749 4.04567 4.20864 4.28921 4.30571 4.31608 4.48500 4.50443 4.54725 4.58387 4.69168 4.75466 4.83062 4.86670 4.95111 4.97500 5.13694 5.15856 5.23612 5.25744 5.36417 5.41939 5.71168 5.76551 6.10445 6.19832 6.44523 6.52909 7.06294 7.26604 7.35289 8.74382 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.001669 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.285425 B =16769.054658 C =18108.235137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.165 5.165 3 N -0.315 5.315 4 C -0.027 4.027 5 C -0.005 4.005 6 C 0.153 3.847 7 N -0.696 5.696 8 C 0.076 3.924 9 C -0.094 4.094 10 C -0.146 4.146 11 C 0.103 3.897 12 N -0.696 5.696 13 C 0.536 3.464 14 O -0.566 6.566 15 C -0.130 4.130 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.121 4.121 26 N -0.297 5.297 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.221 0.779 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.343 0.657 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.415 0.585 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.483 2.980 -31.180 34.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.067 5.067 3 N -0.156 5.156 4 C -0.209 4.209 5 C -0.168 4.168 6 C 0.023 3.977 7 N -0.329 5.329 8 C -0.052 4.052 9 C -0.113 4.113 10 C -0.185 4.185 11 C -0.002 4.002 12 N -0.348 5.348 13 C 0.322 3.678 14 O -0.444 6.444 15 C -0.281 4.281 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.160 4.160 26 N -0.140 5.140 27 H 0.117 0.883 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.238 0.762 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.252 0.748 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.499 3.483 -31.058 34.885 hybrid contribution -0.285 -0.245 1.057 1.122 sum -15.783 3.238 -30.001 34.053 Atomic orbital electron populations 1.22497 0.68304 1.07287 1.06165 1.48405 1.10122 0.98868 1.49283 1.74022 1.04803 1.16894 1.19901 1.25172 0.94929 0.95090 1.05704 1.23395 0.92818 0.94293 1.06258 1.20097 0.90340 0.96504 0.90806 1.60389 1.40402 1.22404 1.09660 1.21923 0.90663 0.96987 0.95645 1.22486 0.96888 0.95918 0.96000 1.23553 0.98895 0.96553 0.99515 1.22020 0.97680 0.97308 0.83194 1.45451 1.25349 1.59722 1.04319 1.20055 0.84346 0.78056 0.85360 1.90684 1.23749 1.42518 1.87445 1.23374 1.03834 1.05643 0.95282 1.85562 1.31696 1.77419 0.97662 1.23243 1.09533 1.43491 0.93166 0.89951 1.26131 0.96487 0.95052 1.01499 1.70186 1.21041 1.41467 1.22055 0.84900 0.78210 0.78006 0.76792 1.18072 1.19847 1.19934 1.23285 0.97987 0.98506 0.96190 1.74004 1.04581 1.16324 1.19129 0.88297 0.86386 0.86553 0.76227 0.89437 0.90531 0.83908 0.90028 0.93332 0.89086 0.88120 0.92699 0.90475 0.74837 0.87404 0.87200 0.91975 0.89966 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.57 127.77 1.48 2.17 16 2 N -0.16 -2.81 4.35 -206.56 -0.90 -3.71 16 3 N -0.31 -5.84 12.05 -56.86 -0.69 -6.53 16 4 C -0.03 -0.40 12.16 85.11 1.03 0.63 16 5 C 0.00 -0.08 6.87 42.98 0.30 0.22 16 6 C 0.15 1.70 6.27 85.56 0.54 2.24 16 7 N -0.70 -8.82 6.49 -517.92 -3.36 -12.19 16 8 C 0.08 0.76 5.51 86.30 0.48 1.24 16 9 C -0.09 -1.20 3.77 -10.27 -0.04 -1.24 16 10 C -0.15 -2.52 7.44 31.18 0.23 -2.29 16 11 C 0.10 2.22 4.33 45.58 0.20 2.42 16 12 N -0.70 -17.63 5.26 -439.76 -2.31 -19.94 16 13 C 0.54 20.00 7.85 87.65 0.69 20.68 16 14 O -0.57 -26.52 15.46 -3.05 -0.05 -26.57 16 15 C -0.13 -5.22 6.16 71.23 0.44 -4.78 16 16 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 17 C -0.55 -31.51 9.50 67.95 0.65 -30.86 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.75 5.49 84.86 0.47 1.21 16 20 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 21 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 C -0.12 -1.56 7.39 31.12 0.23 -1.33 16 26 N -0.30 -5.81 12.05 -47.24 -0.57 -6.38 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.22 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.34 4.50 8.72 -89.70 -0.78 3.72 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.38 7.88 -2.39 -0.02 0.36 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.45 7.92 -2.39 -0.02 1.43 16 38 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.08 2.07 7.46 -2.39 -0.02 2.05 16 40 H 0.41 7.89 8.70 -92.71 -0.81 7.09 16 41 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 42 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.11 1.08 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -84.39 397.15 -0.62 -85.01 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.57 Total: 19.68 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 6.68 Total: -9.69 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -7.54 Total: -104.77 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -84.39 -0.62 -85.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733944420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.964 kcal (2) G-P(sol) polarization free energy of solvation -84.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds