Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47124 * 2 1 4 4 C 1.36944 * 119.99863 * 275.31259 * 3 2 1 5 5 H 1.08000 * 120.00131 * 37.57167 * 4 3 2 6 6 C 1.38809 * 119.99871 * 217.57791 * 4 3 2 7 7 N 1.31618 * 120.00327 * 21.42675 * 6 4 3 8 8 Si 1.86807 * 120.00052 * 201.42993 * 6 4 3 9 9 H 1.48503 * 109.46585 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47212 * 119.99591 * 8 6 4 11 11 H 1.48495 * 109.46988 * 239.99824 * 8 6 4 12 12 C 1.46499 * 120.00627 * 95.30915 * 3 2 1 13 13 C 1.53002 * 109.47136 * 270.00218 * 12 3 2 14 14 C 1.52997 * 109.46965 * 179.97438 * 13 12 3 15 15 N 1.46506 * 109.47026 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00060 * 179.97438 * 15 14 13 17 17 O 1.21285 * 120.00471 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00266 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.47512 * 180.02562 * 18 16 15 20 20 C 1.38222 * 119.60273 * 125.25448 * 19 18 16 21 21 C 1.38616 * 119.17468 * 180.25019 * 20 19 18 22 22 C 1.50700 * 120.79636 * 179.77558 * 21 20 19 23 23 C 1.38773 * 118.40707 * 359.51121 * 21 20 19 24 24 Cl 1.73606 * 120.43178 * 180.22771 * 23 21 20 25 25 C 1.38308 * 119.13972 * 0.24155 * 23 21 20 26 26 N 1.31853 * 119.60041 * 305.00310 * 19 18 16 27 27 H 1.09004 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47362 * 299.99828 * 1 2 3 29 29 H 1.08996 * 109.47772 * 60.00185 * 1 2 3 30 30 H 1.08998 * 109.46989 * 239.99778 * 2 1 3 31 31 H 1.09006 * 109.47242 * 119.99750 * 2 1 3 32 32 H 0.96995 * 120.00164 * 180.02562 * 7 6 4 33 33 H 1.08992 * 109.47356 * 149.99762 * 12 3 2 34 34 H 1.09000 * 109.46660 * 29.99929 * 12 3 2 35 35 H 1.09001 * 109.46868 * 59.99812 * 13 12 3 36 36 H 1.08996 * 109.47339 * 299.99890 * 13 12 3 37 37 H 1.08992 * 109.47129 * 59.99789 * 14 13 12 38 38 H 1.09000 * 109.47058 * 299.99851 * 14 13 12 39 39 H 0.97001 * 120.00119 * 0.02562 * 15 14 13 40 40 H 1.09001 * 109.46641 * 60.00400 * 18 16 15 41 41 H 1.09000 * 109.47071 * 300.00188 * 18 16 15 42 42 H 1.08004 * 120.41916 * 0.02873 * 20 19 18 43 43 H 1.09003 * 109.47396 * 269.72246 * 22 21 20 44 44 H 1.08999 * 109.46983 * 149.72148 * 22 21 20 45 45 H 1.08998 * 109.47070 * 29.72211 * 22 21 20 46 46 H 1.08000 * 119.62678 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0633 -1.1809 5 1 1.4104 1.9277 -1.9628 6 6 3.2110 2.9289 -1.3729 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2796 -2.6585 9 1 1.7773 4.2134 -3.3322 10 1 3.2548 5.6022 -2.0017 11 1 4.1764 4.0964 -3.6640 12 6 2.3732 2.0328 1.2632 13 6 1.1425 2.7383 1.8365 14 6 1.5130 3.4183 3.1560 15 7 0.3345 4.0934 3.7052 16 6 0.4240 4.7635 4.8711 17 8 1.4803 4.8081 5.4655 18 6 -0.7881 5.4585 5.4358 19 6 -0.4233 6.1281 6.7356 20 6 -0.6685 7.4784 6.9004 21 6 -0.3246 8.0865 8.0977 22 6 -0.5709 9.5573 8.3148 23 6 0.2469 7.3072 9.0937 24 17 0.6924 8.0133 10.6158 25 6 0.4571 5.9606 8.8579 26 7 0.1214 5.4179 7.7038 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.0487 3.4031 -0.7832 33 1 3.1616 2.7641 1.0858 34 1 2.7255 1.2834 1.9720 35 1 0.3541 2.0069 2.0138 36 1 0.7902 3.4876 1.1276 37 1 2.3016 4.1496 2.9790 38 1 1.8651 2.6687 3.8647 39 1 -0.5104 4.0575 3.2302 40 1 -1.5768 4.7271 5.6124 41 1 -1.1399 6.2084 4.7274 42 1 -1.1191 8.0534 6.1050 43 1 0.3046 10.1232 7.9963 44 1 -0.7578 9.7421 9.3726 45 1 -1.4375 9.8703 7.7325 46 1 0.9009 5.3467 9.6276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752187921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -4.331581 kcal Electronic energy + Delta-G solvation = -26084.288762 eV Core-core repulsion = 22227.900310 eV Total energy + Delta-G solvation = -3856.388452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84850 -39.25570 -37.01374 -36.42125 -34.75445 -34.27263 -33.05074 -31.85835 -31.23657 -28.89916 -28.29382 -28.01620 -25.16087 -23.72904 -23.49618 -21.91643 -21.00462 -20.38036 -19.81019 -17.47524 -17.00336 -16.73643 -16.69721 -16.11741 -15.48831 -15.22924 -14.96096 -14.82078 -14.20631 -13.99341 -13.77592 -13.57949 -13.41360 -13.22037 -13.04890 -13.02419 -12.64327 -12.40212 -12.36070 -12.13231 -11.92888 -11.56806 -11.52690 -11.38930 -11.12454 -11.01398 -10.76886 -10.55759 -10.44374 -10.04996 -9.86820 -9.82349 -9.69851 -9.57131 -9.52068 -9.09556 -8.78500 -8.47333 -6.55854 -5.77985 -3.37361 0.58578 0.84441 1.69726 2.79259 3.15528 3.33899 3.43037 3.44954 3.53532 3.92552 4.17301 4.22118 4.47291 4.56234 4.73419 4.93468 4.96609 5.07380 5.12165 5.21443 5.26549 5.27281 5.41241 5.48328 5.63329 5.69270 5.73092 5.86396 6.00445 6.10829 6.18103 6.31028 6.36943 6.44752 6.50591 6.60333 6.76796 6.81778 6.92078 7.10554 7.18757 7.64133 7.69028 7.70487 7.83059 8.40207 8.53065 9.20354 9.82796 10.41769 11.21304 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.001942 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.173870 B =14411.561828 C =15101.237284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.259 4.259 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.122 3.878 15 N -0.727 5.727 16 C 0.513 3.487 17 O -0.526 6.526 18 C -0.095 4.095 19 C 0.155 3.845 20 C -0.158 4.158 21 C -0.033 4.033 22 C -0.120 4.120 23 C -0.098 4.098 24 Cl -0.058 7.058 25 C 0.125 3.875 26 N -0.444 5.444 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.254 0.746 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.398 0.602 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.144 0.856 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.669 10.591 18.658 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.023 3.977 13 C -0.186 4.186 14 C -0.001 4.001 15 N -0.379 5.379 16 C 0.298 3.702 17 O -0.401 6.401 18 C -0.136 4.136 19 C 0.017 3.983 20 C -0.178 4.178 21 C -0.041 4.041 22 C -0.177 4.177 23 C -0.127 4.127 24 Cl -0.029 7.029 25 C -0.033 4.033 26 N -0.152 5.152 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.232 0.768 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.162 0.838 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.513 9.852 19.054 24.833 hybrid contribution -0.540 1.684 -0.623 1.875 sum -13.053 11.536 18.430 25.360 Atomic orbital electron populations 1.22367 1.00176 0.98874 1.01087 1.20848 0.91673 0.87422 0.98720 1.43753 1.76050 1.08188 1.02506 1.19013 1.04603 1.21117 0.94148 0.92307 1.25197 0.94240 1.01359 0.98063 1.70007 1.03212 1.37223 1.42366 0.86373 0.77646 0.82339 0.81291 1.20123 1.21443 1.21646 1.20795 0.94472 0.96656 0.85742 1.22524 1.02327 0.99847 0.93905 1.21457 0.87043 0.96085 0.95547 1.46136 1.14532 1.54062 1.23159 1.20130 0.89739 0.79341 0.81034 1.90745 1.30013 1.60360 1.59017 1.20660 0.98443 1.01319 0.93165 1.20688 0.93075 0.90446 0.94084 1.21837 1.03113 0.95138 0.97724 1.20173 0.94719 0.97056 0.92185 1.20896 1.03061 0.90030 1.03695 1.22025 1.05899 0.95215 0.89595 1.98363 1.91209 1.84088 1.29256 1.22778 0.95374 0.90540 0.94633 1.67626 1.09078 1.38919 0.99608 0.94652 0.93799 0.93286 0.93914 0.94833 0.93567 0.88780 0.95682 0.93063 0.91765 0.91660 0.92037 0.76838 0.86745 0.87116 0.83838 0.89907 0.90402 0.90483 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.14 2.92 6.44 -4.05 -0.03 2.89 16 3 N -0.58 -14.13 2.43 -173.24 -0.42 -14.56 16 4 C -0.26 -6.90 9.45 -15.06 -0.14 -7.04 16 5 H 0.06 1.57 7.92 -52.49 -0.42 1.16 16 6 C 0.01 0.32 4.95 -17.43 -0.09 0.23 16 7 N -0.89 -25.26 11.47 55.49 0.64 -24.62 16 8 Si 0.89 21.19 29.61 -169.99 -5.03 16.16 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 C 0.15 3.39 5.33 -4.04 -0.02 3.37 16 13 C -0.15 -2.65 5.65 -26.73 -0.15 -2.80 16 14 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 15 N -0.73 -9.76 5.56 -60.29 -0.33 -10.09 16 16 C 0.51 7.25 7.76 -10.99 -0.09 7.17 16 17 O -0.53 -9.88 15.33 5.55 0.09 -9.80 16 18 C -0.10 -0.90 6.10 -29.03 -0.18 -1.08 16 19 C 0.15 1.75 5.76 -82.59 -0.48 1.27 16 20 C -0.16 -1.42 9.42 -39.45 -0.37 -1.80 16 21 C -0.03 -0.29 5.92 -104.28 -0.62 -0.91 16 22 C -0.12 -0.74 9.69 36.01 0.35 -0.39 16 23 C -0.10 -0.97 6.34 -39.36 -0.25 -1.22 16 24 Cl -0.06 -0.49 27.48 -51.86 -1.43 -1.92 16 25 C 0.13 1.41 10.99 -17.51 -0.19 1.22 16 26 N -0.44 -5.88 9.22 -9.45 -0.09 -5.97 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.74 6.64 -51.93 -0.34 0.40 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.09 2.44 5.52 -51.93 -0.29 2.15 16 34 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 35 H 0.05 0.87 6.64 -51.93 -0.34 0.53 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.11 0.69 7.87 -51.93 -0.41 0.28 16 42 H 0.14 0.87 7.95 -52.48 -0.42 0.45 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.45 7.03 -51.93 -0.37 0.09 16 45 H 0.08 0.35 8.10 -51.93 -0.42 -0.08 16 46 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -33.06 395.39 -9.61 -42.67 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.10 Total: 1.77 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.89 Total: 0.40 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.21 Total: -55.24 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.43 Total: -1.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.06 -9.61 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752187921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.337 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds