Wall clock time and date at job start Sat Apr 11 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47124 * 2 1 4 4 C 1.36944 * 119.99863 * 275.31259 * 3 2 1 5 5 H 1.08000 * 120.00131 * 37.57167 * 4 3 2 6 6 C 1.38809 * 119.99871 * 217.57791 * 4 3 2 7 7 N 1.31618 * 120.00327 * 21.42675 * 6 4 3 8 8 Si 1.86807 * 120.00052 * 201.42993 * 6 4 3 9 9 H 1.48503 * 109.46585 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47212 * 119.99591 * 8 6 4 11 11 H 1.48495 * 109.46988 * 239.99824 * 8 6 4 12 12 C 1.46499 * 120.00627 * 95.30915 * 3 2 1 13 13 C 1.53002 * 109.47136 * 270.00218 * 12 3 2 14 14 C 1.52997 * 109.46965 * 179.97438 * 13 12 3 15 15 N 1.46506 * 109.47026 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00060 * 179.97438 * 15 14 13 17 17 O 1.21285 * 120.00471 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00266 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.47512 * 180.02562 * 18 16 15 20 20 C 1.38222 * 119.60273 * 125.25448 * 19 18 16 21 21 C 1.38616 * 119.17468 * 180.25019 * 20 19 18 22 22 C 1.50700 * 120.79636 * 179.77558 * 21 20 19 23 23 C 1.38773 * 118.40707 * 359.51121 * 21 20 19 24 24 Cl 1.73606 * 120.43178 * 180.22771 * 23 21 20 25 25 C 1.38308 * 119.13972 * 0.24155 * 23 21 20 26 26 N 1.31853 * 119.60041 * 305.00310 * 19 18 16 27 27 H 1.09004 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47362 * 299.99828 * 1 2 3 29 29 H 1.08996 * 109.47772 * 60.00185 * 1 2 3 30 30 H 1.08998 * 109.46989 * 239.99778 * 2 1 3 31 31 H 1.09006 * 109.47242 * 119.99750 * 2 1 3 32 32 H 0.96995 * 120.00164 * 180.02562 * 7 6 4 33 33 H 1.08992 * 109.47356 * 149.99762 * 12 3 2 34 34 H 1.09000 * 109.46660 * 29.99929 * 12 3 2 35 35 H 1.09001 * 109.46868 * 59.99812 * 13 12 3 36 36 H 1.08996 * 109.47339 * 299.99890 * 13 12 3 37 37 H 1.08992 * 109.47129 * 59.99789 * 14 13 12 38 38 H 1.09000 * 109.47058 * 299.99851 * 14 13 12 39 39 H 0.97001 * 120.00119 * 0.02562 * 15 14 13 40 40 H 1.09001 * 109.46641 * 60.00400 * 18 16 15 41 41 H 1.09000 * 109.47071 * 300.00188 * 18 16 15 42 42 H 1.08004 * 120.41916 * 0.02873 * 20 19 18 43 43 H 1.09003 * 109.47396 * 269.72246 * 22 21 20 44 44 H 1.08999 * 109.46983 * 149.72148 * 22 21 20 45 45 H 1.08998 * 109.47070 * 29.72211 * 22 21 20 46 46 H 1.08000 * 119.62678 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0633 -1.1809 5 1 1.4104 1.9277 -1.9628 6 6 3.2110 2.9289 -1.3729 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2796 -2.6585 9 1 1.7773 4.2134 -3.3322 10 1 3.2548 5.6022 -2.0017 11 1 4.1764 4.0964 -3.6640 12 6 2.3732 2.0328 1.2632 13 6 1.1425 2.7383 1.8365 14 6 1.5130 3.4183 3.1560 15 7 0.3345 4.0934 3.7052 16 6 0.4240 4.7635 4.8711 17 8 1.4803 4.8081 5.4655 18 6 -0.7881 5.4585 5.4358 19 6 -0.4233 6.1281 6.7356 20 6 -0.6685 7.4784 6.9004 21 6 -0.3246 8.0865 8.0977 22 6 -0.5709 9.5573 8.3148 23 6 0.2469 7.3072 9.0937 24 17 0.6924 8.0133 10.6158 25 6 0.4571 5.9606 8.8579 26 7 0.1214 5.4179 7.7038 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.0487 3.4031 -0.7832 33 1 3.1616 2.7641 1.0858 34 1 2.7255 1.2834 1.9720 35 1 0.3541 2.0069 2.0138 36 1 0.7902 3.4876 1.1276 37 1 2.3016 4.1496 2.9790 38 1 1.8651 2.6687 3.8647 39 1 -0.5104 4.0575 3.2302 40 1 -1.5768 4.7271 5.6124 41 1 -1.1399 6.2084 4.7274 42 1 -1.1191 8.0534 6.1050 43 1 0.3046 10.1232 7.9963 44 1 -0.7578 9.7421 9.3726 45 1 -1.4375 9.8703 7.7325 46 1 0.9009 5.3467 9.6276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752187921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:57 Heat of formation + Delta-G solvation = -24.477006 kcal Electronic energy + Delta-G solvation = -26085.162334 eV Core-core repulsion = 22227.900310 eV Total energy + Delta-G solvation = -3857.262024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62953 -40.35829 -38.17416 -37.70028 -36.12169 -34.96670 -33.90150 -33.78400 -32.64010 -30.35779 -29.22297 -28.80116 -26.87990 -25.22405 -24.33393 -22.88880 -22.41775 -22.00277 -21.04268 -18.60992 -18.32842 -17.72686 -17.64038 -17.11756 -16.99901 -16.54955 -16.20238 -15.85195 -15.60772 -15.42030 -15.01957 -14.64743 -14.52652 -14.23305 -14.05130 -13.89546 -13.72903 -13.62828 -13.32620 -13.19912 -13.12219 -12.83395 -12.71092 -12.69654 -12.58509 -12.51172 -12.27659 -12.20163 -12.10872 -11.90549 -11.44511 -11.22901 -10.94506 -10.53467 -10.49297 -10.43699 -10.04503 -9.83835 -8.53470 -7.79325 -5.43842 -0.15361 0.14477 0.98781 1.45169 1.48754 1.58539 1.72340 2.17840 2.52153 2.68241 3.19944 3.25857 3.52687 3.58554 3.69000 3.87165 3.96797 4.17172 4.18262 4.37861 4.38458 4.46904 4.47704 4.57134 4.59909 4.63185 4.71421 4.75360 4.80069 4.86449 4.90679 5.04813 5.06798 5.10346 5.14621 5.18386 5.35449 5.47659 5.51214 5.51318 5.62520 5.71541 5.86081 6.49605 6.64375 6.90435 7.20160 7.34983 7.90166 8.42989 9.15355 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.001942 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.173870 B =14411.561828 C =15101.237284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.260 4.260 5 H 0.057 0.943 6 C -0.039 4.039 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.264 1.264 10 H -0.290 1.290 11 H -0.294 1.294 12 C 0.150 3.850 13 C -0.120 4.120 14 C 0.136 3.864 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.579 6.579 18 C -0.085 4.085 19 C 0.131 3.869 20 C -0.153 4.153 21 C -0.038 4.038 22 C -0.118 4.118 23 C -0.105 4.105 24 Cl -0.050 7.050 25 C 0.105 3.895 26 N -0.482 5.482 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.028 0.972 31 H 0.043 0.957 32 H 0.250 0.750 33 H 0.058 0.942 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.416 0.584 40 H 0.139 0.861 41 H 0.152 0.848 42 H 0.179 0.821 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.622 11.852 18.500 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.391 4.391 5 H 0.074 0.926 6 C -0.236 4.236 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.188 1.188 10 H -0.217 1.217 11 H -0.221 1.221 12 C 0.023 3.977 13 C -0.161 4.161 14 C 0.011 3.989 15 N -0.369 5.369 16 C 0.296 3.704 17 O -0.458 6.458 18 C -0.124 4.124 19 C -0.007 4.007 20 C -0.172 4.172 21 C -0.047 4.047 22 C -0.175 4.175 23 C -0.134 4.134 24 Cl -0.021 7.021 25 C -0.053 4.053 26 N -0.192 5.192 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.196 0.804 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.532 11.099 18.890 26.857 hybrid contribution 0.403 1.226 -0.518 1.390 sum -15.129 12.325 18.372 26.802 Atomic orbital electron populations 1.22160 0.97079 1.00779 1.00931 1.21005 0.93996 0.85724 0.98518 1.43998 1.76457 1.09550 1.02276 1.19221 1.04018 1.21045 0.94807 0.92561 1.25887 0.94023 1.03495 1.00214 1.70146 1.03875 1.38096 1.44302 0.85411 0.77784 0.79517 0.78954 1.18834 1.21660 1.22106 1.20697 0.95471 0.96024 0.85524 1.22138 1.00475 0.99566 0.93877 1.21044 0.87814 0.95300 0.94771 1.45933 1.14177 1.53499 1.23277 1.20994 0.90566 0.78544 0.80287 1.90729 1.32518 1.62176 1.60388 1.20752 0.96270 1.02442 0.92962 1.21096 0.93617 0.91637 0.94346 1.22197 1.02134 0.94411 0.98492 1.20588 0.93808 0.98411 0.91857 1.20970 1.04177 0.88019 1.04291 1.22117 1.05895 0.95021 0.90345 1.98360 1.91164 1.83809 1.28762 1.22915 0.96226 0.91523 0.94679 1.67567 1.10427 1.40510 1.00665 0.91719 0.92907 0.94379 0.95326 0.93901 0.94096 0.92396 0.95772 0.91072 0.92621 0.94267 0.92944 0.74662 0.84305 0.83042 0.80406 0.89439 0.90273 0.88259 0.81530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.21 71.98 0.73 -4.18 16 2 C 0.13 5.42 6.44 86.38 0.56 5.98 16 3 N -0.60 -29.06 2.43 -702.02 -1.71 -30.77 16 4 C -0.26 -13.90 9.45 84.03 0.79 -13.10 16 5 H 0.06 2.99 7.92 -2.91 -0.02 2.97 16 6 C -0.04 -2.14 4.95 84.86 0.42 -1.72 16 7 N -0.92 -53.91 11.47 21.65 0.25 -53.66 16 8 Si 0.96 43.93 29.61 68.60 2.03 45.96 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 C 0.15 6.84 5.33 86.38 0.46 7.30 16 13 C -0.12 -4.28 5.65 30.59 0.17 -4.11 16 14 C 0.14 4.54 5.67 86.38 0.49 5.03 16 15 N -0.72 -18.09 5.56 -463.06 -2.57 -20.67 16 16 C 0.51 13.79 7.76 87.66 0.68 14.47 16 17 O -0.58 -22.09 15.33 -3.05 -0.05 -22.14 16 18 C -0.08 -1.36 6.10 29.10 0.18 -1.18 16 19 C 0.13 2.74 5.76 42.55 0.25 2.99 16 20 C -0.15 -2.35 9.42 22.36 0.21 -2.14 16 21 C -0.04 -0.61 5.92 -19.65 -0.12 -0.73 16 22 C -0.12 -1.14 9.69 71.24 0.69 -0.45 16 23 C -0.10 -2.02 6.34 22.41 0.14 -1.88 16 24 Cl -0.05 -0.82 27.48 -2.72 -0.07 -0.89 16 25 C 0.10 2.40 10.99 84.70 0.93 3.34 16 26 N -0.48 -12.80 9.22 -183.80 -1.70 -14.50 16 27 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.05 1.62 6.64 -2.39 -0.02 1.61 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.04 1.64 7.83 -2.38 -0.02 1.62 16 32 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.06 3.12 5.52 -2.39 -0.01 3.11 16 34 H 0.02 1.07 7.86 -2.39 -0.02 1.05 16 35 H 0.07 2.26 6.64 -2.39 -0.02 2.24 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.42 7.44 8.47 -92.71 -0.79 6.65 16 40 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.15 1.17 7.87 -2.39 -0.02 1.15 16 42 H 0.18 1.36 7.95 -2.91 -0.02 1.33 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 0.75 7.03 -2.39 -0.02 0.73 16 45 H 0.10 0.52 8.10 -2.39 -0.02 0.50 16 46 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -74.68 395.39 2.97 -71.71 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.20 Total: 15.35 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.59 Total: 9.61 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -5.73 Total: -119.59 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.14 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.07 Total: -0.89 kcal Total: -74.68 2.97 -71.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752187921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.228 kcal (2) G-P(sol) polarization free energy of solvation -74.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds