Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47186 * 2 1 4 4 N 1.28596 * 124.61989 * 270.00371 * 3 2 1 5 5 C 1.31380 * 108.72080 * 179.71676 * 4 3 2 6 6 C 1.39687 * 105.89667 * 0.42613 * 5 4 3 7 7 C 1.50701 * 127.04834 * 179.84219 * 6 5 4 8 8 N 1.46899 * 109.46792 * 94.70837 * 7 6 5 9 9 C 1.47966 * 111.00090 * 70.64133 * 8 7 6 10 10 C 1.53934 * 86.17868 * 137.57851 * 9 8 7 11 11 C 1.47961 * 110.99527 * 169.99602 * 8 7 6 12 12 H 1.08995 * 113.86550 * 336.74998 * 11 8 7 13 13 C 1.53010 * 113.75821 * 108.09911 * 11 8 7 14 14 N 1.46500 * 109.47032 * 301.06828 * 13 11 8 15 15 C 1.34770 * 119.99680 * 179.97438 * 14 13 11 16 16 O 1.21284 * 120.00294 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.00005 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47234 * 180.02562 * 17 15 14 19 19 C 1.76194 * 99.99738 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00441 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00052 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99969 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00388 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47228 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46793 * 299.99994 * 23 21 19 26 26 H 1.48500 * 109.47000 * 60.00087 * 23 21 19 27 27 N 1.28603 * 124.61477 * 90.00131 * 3 2 1 28 28 H 1.09004 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47435 * 299.99664 * 1 2 3 30 30 H 1.08996 * 109.47334 * 60.00366 * 1 2 3 31 31 H 1.08998 * 109.47435 * 240.00336 * 2 1 3 32 32 H 1.09005 * 109.47101 * 120.00137 * 2 1 3 33 33 H 1.07995 * 127.05431 * 180.26992 * 5 4 3 34 34 H 1.08998 * 109.46716 * 334.70954 * 7 6 5 35 35 H 1.09002 * 109.46496 * 214.70673 * 7 6 5 36 36 H 1.09004 * 113.75812 * 23.26094 * 9 8 7 37 37 H 1.08991 * 113.85634 * 251.90861 * 9 8 7 38 38 H 1.09007 * 113.73208 * 221.92010 * 10 9 8 39 39 H 1.08999 * 113.73715 * 90.64382 * 10 9 8 40 40 H 1.08992 * 109.47427 * 181.06316 * 13 11 8 41 41 H 1.09001 * 109.46646 * 61.06360 * 13 11 8 42 42 H 0.96995 * 120.00081 * 359.97438 * 14 13 11 43 43 H 1.09000 * 109.47145 * 60.00045 * 17 15 14 44 44 H 1.09001 * 109.46839 * 299.99770 * 17 15 14 45 45 H 0.97005 * 119.99723 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2618 2.0700 -1.0583 5 6 2.6772 3.2633 -0.6984 6 6 2.6830 3.2613 0.6985 7 6 3.0839 4.3953 1.6065 8 7 1.8890 5.1546 1.9983 9 6 1.0437 4.3715 2.9264 10 6 0.8796 5.6811 3.7185 11 6 2.2046 6.1230 3.0715 12 1 3.0871 5.8619 3.6555 13 6 2.2072 7.5804 2.6056 14 7 3.1931 7.7492 1.5352 15 6 3.3706 8.9583 0.9671 16 8 2.7137 9.9067 1.3416 17 6 4.3844 9.1319 -0.1344 18 16 4.3875 10.8560 -0.6854 19 6 5.6256 10.7751 -1.9364 20 1 6.1191 9.8380 -2.1481 21 6 5.9661 11.9154 -2.6506 22 7 5.3637 13.0573 -2.3938 23 14 7.2783 11.8296 -3.9775 24 1 7.4543 13.1721 -4.5872 25 1 8.5618 11.3862 -3.3763 26 1 6.8614 10.8620 -5.0240 27 7 2.2619 2.0700 1.0584 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9591 4.0779 -1.3490 34 1 3.7767 5.0532 1.0818 35 1 3.5676 3.9939 2.4970 36 1 1.5868 3.5963 3.4671 37 1 0.1177 4.0092 2.4801 38 1 0.9410 5.5509 4.7990 39 1 0.0204 6.2762 3.4093 40 1 2.4650 8.2291 3.4427 41 1 1.2175 7.8444 2.2328 42 1 3.7182 6.9907 1.2355 43 1 4.1263 8.4830 -0.9713 44 1 5.3743 8.8681 0.2381 45 1 4.6820 13.1018 -1.7050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754472833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = 102.175071 kcal Electronic energy + Delta-G solvation = -26326.985763 eV Core-core repulsion = 22509.552243 eV Total energy + Delta-G solvation = -3817.433520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.82649 -40.54006 -38.88001 -35.46462 -34.34412 -33.13327 -32.49129 -31.92441 -30.18551 -29.51372 -27.64350 -25.66093 -24.81096 -24.25585 -23.41743 -22.17816 -21.03035 -20.45169 -19.86407 -18.30972 -17.72860 -17.04100 -16.76486 -16.28778 -16.14835 -15.57584 -15.17980 -15.04681 -14.90574 -14.55830 -14.26160 -13.95599 -13.81012 -13.61029 -13.27528 -13.20275 -12.78040 -12.54136 -12.36529 -12.13130 -12.02775 -11.93922 -11.84784 -11.74055 -11.72464 -11.12486 -11.06253 -11.04292 -10.89277 -10.50147 -10.15078 -9.56644 -9.54221 -9.41918 -9.12725 -8.98895 -8.84798 -8.18103 -6.62779 -6.58788 -3.96072 1.51205 1.96498 2.12476 2.95221 3.08457 3.36252 3.40323 3.45699 3.59643 3.67407 3.80137 4.11413 4.28295 4.30230 4.30794 4.37762 4.50295 4.56396 4.77289 4.81281 4.90862 4.93881 4.99026 5.08364 5.13550 5.21150 5.21796 5.25723 5.36477 5.41504 5.46311 5.51709 5.57874 5.73304 5.78566 5.82711 5.88020 5.93142 5.98736 6.06478 6.41778 6.61320 6.65135 7.69934 7.95253 8.06361 8.53508 8.59596 9.30642 10.85153 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.002350 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.339174 B =11913.574472 C =13821.430619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.137 3.863 3 N -0.157 5.157 4 N -0.290 5.290 5 C -0.006 4.006 6 C 0.008 3.992 7 C 0.110 3.890 8 N -0.465 5.465 9 C 0.010 3.990 10 C -0.136 4.136 11 C 0.019 3.981 12 H 0.088 0.912 13 C 0.143 3.857 14 N -0.730 5.730 15 C 0.530 3.470 16 O -0.520 6.520 17 C -0.130 4.130 18 S -0.116 6.116 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.034 3.966 22 N -0.884 5.884 23 Si 1.084 2.916 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.285 1.285 27 N -0.284 5.284 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.198 0.802 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.124 -28.990 11.314 32.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 N -0.058 5.058 4 N -0.131 5.131 5 C -0.189 4.189 6 C -0.155 4.155 7 C -0.021 4.021 8 N -0.189 5.189 9 C -0.119 4.119 10 C -0.174 4.174 11 C -0.091 4.091 12 H 0.106 0.894 13 C 0.018 3.982 14 N -0.385 5.385 15 C 0.316 3.684 16 O -0.395 6.395 17 C -0.282 4.282 18 S 0.110 5.890 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.519 5.519 23 Si 0.910 3.090 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.211 1.211 27 N -0.126 5.126 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.215 0.785 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.140 -27.602 10.180 30.807 hybrid contribution 1.076 -2.130 1.021 2.596 sum -8.064 -29.733 11.201 32.780 Atomic orbital electron populations 1.22176 0.93145 1.03808 1.03743 1.21942 0.96020 0.74642 1.05601 1.48087 1.45159 1.13301 0.99302 1.74082 1.17328 1.05672 1.15989 1.24698 1.04020 0.95482 0.94705 1.22794 1.05109 0.93355 0.94193 1.20871 0.93543 0.90862 0.96777 1.68690 1.12674 1.09511 1.28048 1.23785 0.99036 0.95542 0.93497 1.23362 0.97357 0.96883 0.99787 1.23796 0.98874 0.93800 0.92611 0.89408 1.21190 0.93532 0.93090 0.90347 1.45854 1.42145 1.11195 1.39300 1.20251 0.83380 0.82207 0.82529 1.90701 1.46955 1.39362 1.62439 1.23311 1.00127 1.05765 0.98957 1.84819 1.53610 1.03462 1.47089 1.23699 1.26281 1.01088 1.24394 0.91645 1.26048 1.00431 0.91221 0.99896 1.70800 1.23747 1.26065 1.31246 0.83335 0.74537 0.76301 0.74848 1.20314 1.21165 1.21144 1.73922 1.17311 1.05406 1.16009 0.89643 0.91458 0.91360 0.87475 0.87595 0.78504 0.88546 0.92197 0.90802 0.89739 0.90461 0.88574 0.91065 0.90882 0.77108 0.88959 0.89109 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.14 0.74 7.26 -4.04 -0.03 0.71 16 3 N -0.16 -1.52 3.95 -10.62 -0.04 -1.56 16 4 N -0.29 -3.26 12.05 30.68 0.37 -2.89 16 5 C -0.01 -0.07 12.16 -17.21 -0.21 -0.27 16 6 C 0.01 0.09 6.40 -82.25 -0.53 -0.44 16 7 C 0.11 0.92 5.22 -4.98 -0.03 0.89 16 8 N -0.47 -4.19 5.94 -232.14 -1.38 -5.57 16 9 C 0.01 0.08 7.42 -2.76 -0.02 0.06 16 10 C -0.14 -0.95 7.84 -25.80 -0.20 -1.15 16 11 C 0.02 0.15 3.40 -66.65 -0.23 -0.07 16 12 H 0.09 0.60 7.80 -51.93 -0.40 0.20 16 13 C 0.14 1.63 5.80 -4.04 -0.02 1.61 16 14 N -0.73 -9.74 5.50 -60.29 -0.33 -10.07 16 15 C 0.53 9.93 7.85 -10.99 -0.09 9.85 16 16 O -0.52 -11.87 15.86 5.55 0.09 -11.78 16 17 C -0.13 -2.65 6.16 36.01 0.22 -2.43 16 18 S -0.12 -3.16 19.60 -107.50 -2.11 -5.26 16 19 C -0.61 -17.60 9.50 30.94 0.29 -17.30 16 20 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 21 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.74 13.67 55.49 0.76 -26.98 16 23 Si 1.08 25.11 29.92 -169.99 -5.09 20.03 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 27 N -0.28 -2.94 11.99 33.72 0.40 -2.53 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.20 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.10 0.72 6.55 -51.93 -0.34 0.38 16 35 H 0.06 0.45 7.69 -51.93 -0.40 0.05 16 36 H 0.07 0.55 7.78 -51.93 -0.40 0.14 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.72 7.94 -51.93 -0.41 0.31 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 42 H 0.39 4.24 6.59 -40.82 -0.27 3.98 16 43 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.28 8.90 7.12 -40.82 -0.29 8.61 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -37.82 391.20 -8.77 -46.59 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.79 Total: 2.17 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.55 Total: -8.04 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.22 Total: -49.60 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.03 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.82 -8.77 -46.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754472833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.764 kcal (2) G-P(sol) polarization free energy of solvation -37.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds