Wall clock time and date at job start Sat Apr 11 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47186 * 2 1 4 4 N 1.28596 * 124.61989 * 270.00371 * 3 2 1 5 5 C 1.31380 * 108.72080 * 179.71676 * 4 3 2 6 6 C 1.39687 * 105.89667 * 0.42613 * 5 4 3 7 7 C 1.50701 * 127.04834 * 179.84219 * 6 5 4 8 8 N 1.46899 * 109.46792 * 94.70837 * 7 6 5 9 9 C 1.47966 * 111.00090 * 70.64133 * 8 7 6 10 10 C 1.53934 * 86.17868 * 137.57851 * 9 8 7 11 11 C 1.47961 * 110.99527 * 169.99602 * 8 7 6 12 12 H 1.08995 * 113.86550 * 336.74998 * 11 8 7 13 13 C 1.53010 * 113.75821 * 108.09911 * 11 8 7 14 14 N 1.46500 * 109.47032 * 301.06828 * 13 11 8 15 15 C 1.34770 * 119.99680 * 179.97438 * 14 13 11 16 16 O 1.21284 * 120.00294 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.00005 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47234 * 180.02562 * 17 15 14 19 19 C 1.76194 * 99.99738 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00441 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00052 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99969 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00388 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47228 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46793 * 299.99994 * 23 21 19 26 26 H 1.48500 * 109.47000 * 60.00087 * 23 21 19 27 27 N 1.28603 * 124.61477 * 90.00131 * 3 2 1 28 28 H 1.09004 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47435 * 299.99664 * 1 2 3 30 30 H 1.08996 * 109.47334 * 60.00366 * 1 2 3 31 31 H 1.08998 * 109.47435 * 240.00336 * 2 1 3 32 32 H 1.09005 * 109.47101 * 120.00137 * 2 1 3 33 33 H 1.07995 * 127.05431 * 180.26992 * 5 4 3 34 34 H 1.08998 * 109.46716 * 334.70954 * 7 6 5 35 35 H 1.09002 * 109.46496 * 214.70673 * 7 6 5 36 36 H 1.09004 * 113.75812 * 23.26094 * 9 8 7 37 37 H 1.08991 * 113.85634 * 251.90861 * 9 8 7 38 38 H 1.09007 * 113.73208 * 221.92010 * 10 9 8 39 39 H 1.08999 * 113.73715 * 90.64382 * 10 9 8 40 40 H 1.08992 * 109.47427 * 181.06316 * 13 11 8 41 41 H 1.09001 * 109.46646 * 61.06360 * 13 11 8 42 42 H 0.96995 * 120.00081 * 359.97438 * 14 13 11 43 43 H 1.09000 * 109.47145 * 60.00045 * 17 15 14 44 44 H 1.09001 * 109.46839 * 299.99770 * 17 15 14 45 45 H 0.97005 * 119.99723 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2618 2.0700 -1.0583 5 6 2.6772 3.2633 -0.6984 6 6 2.6830 3.2613 0.6985 7 6 3.0839 4.3953 1.6065 8 7 1.8890 5.1546 1.9983 9 6 1.0437 4.3715 2.9264 10 6 0.8796 5.6811 3.7185 11 6 2.2046 6.1230 3.0715 12 1 3.0871 5.8619 3.6555 13 6 2.2072 7.5804 2.6056 14 7 3.1931 7.7492 1.5352 15 6 3.3706 8.9583 0.9671 16 8 2.7137 9.9067 1.3416 17 6 4.3844 9.1319 -0.1344 18 16 4.3875 10.8560 -0.6854 19 6 5.6256 10.7751 -1.9364 20 1 6.1191 9.8380 -2.1481 21 6 5.9661 11.9154 -2.6506 22 7 5.3637 13.0573 -2.3938 23 14 7.2783 11.8296 -3.9775 24 1 7.4543 13.1721 -4.5872 25 1 8.5618 11.3862 -3.3763 26 1 6.8614 10.8620 -5.0240 27 7 2.2619 2.0700 1.0584 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9591 4.0779 -1.3490 34 1 3.7767 5.0532 1.0818 35 1 3.5676 3.9939 2.4970 36 1 1.5868 3.5963 3.4671 37 1 0.1177 4.0092 2.4801 38 1 0.9410 5.5509 4.7990 39 1 0.0204 6.2762 3.4093 40 1 2.4650 8.2291 3.4427 41 1 1.2175 7.8444 2.2328 42 1 3.7182 6.9907 1.2355 43 1 4.1263 8.4830 -0.9713 44 1 5.3743 8.8681 0.2381 45 1 4.6820 13.1018 -1.7050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754472833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:05 Heat of formation + Delta-G solvation = 72.412286 kcal Electronic energy + Delta-G solvation = -26328.276374 eV Core-core repulsion = 22509.552243 eV Total energy + Delta-G solvation = -3818.724131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.54318 -41.32565 -40.24628 -36.05232 -35.57343 -34.71727 -33.85006 -32.58119 -31.55613 -30.18584 -28.73797 -27.02372 -26.25186 -24.86332 -24.25736 -22.82967 -21.86121 -21.67156 -20.68377 -20.29456 -18.36257 -18.08866 -17.72347 -17.55856 -16.99922 -16.54784 -16.32387 -16.13784 -15.82368 -15.70121 -15.55630 -15.08375 -14.80982 -14.68233 -14.47668 -14.41982 -13.87603 -13.74053 -13.62861 -13.17280 -13.00153 -12.76135 -12.71116 -12.63393 -12.42953 -12.32575 -11.94215 -11.86755 -11.81713 -11.74262 -11.51581 -11.26994 -11.07266 -10.98992 -10.29174 -10.21186 -10.09745 -9.77729 -8.89779 -8.83542 -6.24394 0.78484 1.23872 1.36719 1.42492 1.53928 1.58009 1.62449 1.82407 2.20964 2.37264 2.88773 3.04785 3.10566 3.18622 3.49220 3.70615 3.75575 3.87825 3.91635 3.97003 4.09554 4.15102 4.20700 4.22641 4.31671 4.36544 4.41846 4.47076 4.50424 4.66783 4.70264 4.74500 4.77637 4.88186 4.97226 4.99408 5.10525 5.19465 5.23627 5.28741 5.46468 5.67175 5.77560 6.00701 6.17565 6.47168 7.09095 7.21127 7.32674 8.53641 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.002350 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.339174 B =11913.574472 C =13821.430619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.125 3.875 3 N -0.157 5.157 4 N -0.312 5.312 5 C -0.024 4.024 6 C 0.001 3.999 7 C 0.111 3.889 8 N -0.485 5.485 9 C 0.015 3.985 10 C -0.127 4.127 11 C 0.029 3.971 12 H 0.112 0.888 13 C 0.142 3.858 14 N -0.703 5.703 15 C 0.532 3.468 16 O -0.568 6.568 17 C -0.109 4.109 18 S -0.197 6.197 19 C -0.612 4.612 20 H 0.076 0.924 21 C -0.021 4.021 22 N -0.914 5.914 23 Si 1.136 2.864 24 H -0.281 1.281 25 H -0.262 1.262 26 H -0.264 1.264 27 N -0.292 5.292 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.208 0.792 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.411 0.589 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 -31.886 11.881 34.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.007 3.993 3 N -0.059 5.059 4 N -0.153 5.153 5 C -0.206 4.206 6 C -0.161 4.161 7 C -0.019 4.019 8 N -0.209 5.209 9 C -0.113 4.113 10 C -0.165 4.165 11 C -0.081 4.081 12 H 0.129 0.871 13 C 0.018 3.982 14 N -0.357 5.357 15 C 0.318 3.682 16 O -0.447 6.447 17 C -0.261 4.261 18 S 0.030 5.970 19 C -0.759 4.759 20 H 0.094 0.906 21 C -0.224 4.224 22 N -0.549 5.549 23 Si 0.954 3.046 24 H -0.206 1.206 25 H -0.187 1.187 26 H -0.189 1.189 27 N -0.135 5.135 28 H 0.132 0.868 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.225 0.775 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.248 0.752 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.074 -30.579 10.778 33.413 hybrid contribution 0.648 -1.404 0.919 1.799 sum -7.426 -31.983 11.698 34.856 Atomic orbital electron populations 1.22133 0.92570 1.05192 1.02205 1.22370 0.96489 0.73149 1.07262 1.48556 1.44425 1.14198 0.98755 1.74040 1.18030 1.06273 1.16959 1.25000 1.04405 0.95790 0.95421 1.23067 1.05021 0.93767 0.94240 1.20948 0.93400 0.90497 0.97085 1.68658 1.13311 1.10174 1.28785 1.23722 0.98400 0.95917 0.93278 1.23324 0.96285 0.95923 1.00977 1.23759 1.00523 0.91228 0.92564 0.87083 1.21342 0.91884 0.95646 0.89365 1.45626 1.41741 1.09777 1.38528 1.19993 0.82718 0.83199 0.82310 1.90692 1.48728 1.41289 1.63962 1.23225 1.02104 1.00520 1.00214 1.85067 1.53892 1.10339 1.47688 1.24028 1.26083 1.01549 1.24266 0.90627 1.27832 1.01973 0.90649 1.01927 1.70920 1.24701 1.27456 1.31840 0.82723 0.72619 0.76716 0.72562 1.20629 1.18703 1.18862 1.73892 1.17556 1.05702 1.16398 0.86801 0.92637 0.93098 0.86097 0.85692 0.77527 0.87700 0.90884 0.89950 0.91027 0.88260 0.89388 0.90981 0.92555 0.75196 0.87162 0.86943 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.24 71.98 0.74 -0.54 16 2 C 0.13 1.15 7.26 86.38 0.63 1.78 16 3 N -0.16 -2.86 3.95 -187.50 -0.74 -3.60 16 4 N -0.31 -6.81 12.05 -56.86 -0.69 -7.50 16 5 C -0.02 -0.49 12.16 85.11 1.03 0.54 16 6 C 0.00 0.03 6.40 42.98 0.28 0.30 16 7 C 0.11 1.58 5.22 85.56 0.45 2.02 16 8 N -0.49 -7.70 5.94 -888.34 -5.27 -12.98 16 9 C 0.02 0.21 7.42 86.40 0.64 0.85 16 10 C -0.13 -1.48 7.84 31.24 0.24 -1.23 16 11 C 0.03 0.39 3.40 45.02 0.15 0.54 16 12 H 0.11 1.08 7.80 -2.39 -0.02 1.06 16 13 C 0.14 3.00 5.80 86.38 0.50 3.51 16 14 N -0.70 -17.39 5.50 -463.05 -2.55 -19.94 16 15 C 0.53 19.51 7.85 87.66 0.69 20.20 16 16 O -0.57 -26.28 15.86 -3.04 -0.05 -26.33 16 17 C -0.11 -4.31 6.16 71.24 0.44 -3.88 16 18 S -0.20 -10.90 19.60 -56.49 -1.11 -12.00 16 19 C -0.61 -35.40 9.50 67.95 0.65 -34.75 16 20 H 0.08 4.08 7.80 -2.91 -0.02 4.06 16 21 C -0.02 -1.22 5.49 84.86 0.47 -0.75 16 22 N -0.91 -58.54 13.67 21.65 0.30 -58.24 16 23 Si 1.14 49.56 29.92 68.60 2.05 51.61 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 26 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 27 N -0.29 -5.65 11.99 -47.24 -0.57 -6.21 16 28 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.13 0.65 8.14 -2.38 -0.02 0.64 16 33 H 0.21 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.10 1.26 6.55 -2.39 -0.02 1.24 16 35 H 0.07 0.86 7.69 -2.39 -0.02 0.84 16 36 H 0.08 1.00 7.78 -2.38 -0.02 0.98 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.09 1.20 7.94 -2.39 -0.02 1.18 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.43 7.91 -2.39 -0.02 1.41 16 42 H 0.41 7.64 6.59 -92.71 -0.61 7.03 16 43 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 44 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 45 H 0.26 17.35 7.12 -92.70 -0.66 16.69 16 Total: -1.00 -84.50 391.20 -1.22 -85.72 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.50 Total: 20.88 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 6.90 Total: -11.41 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -9.52 Total: -108.47 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Atomic # 16 Polarization: -10.90 SS G_CDS: -1.11 Total: -12.00 kcal Total: -84.50 -1.22 -85.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754472833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.133 kcal (2) G-P(sol) polarization free energy of solvation -84.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds