Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47153 * 2 1 4 4 N 1.28606 * 124.61673 * 269.99520 * 3 2 1 5 5 C 1.31375 * 108.71795 * 179.71642 * 4 3 2 6 6 C 1.39680 * 105.90102 * 0.43079 * 5 4 3 7 7 C 1.50697 * 127.04960 * 179.83706 * 6 5 4 8 8 N 1.46907 * 109.47003 * 94.71147 * 7 6 5 9 9 C 1.47960 * 110.99970 * 269.35874 * 8 7 6 10 10 C 1.53930 * 86.17948 * 222.41657 * 9 8 7 11 11 C 1.47965 * 110.99979 * 169.99884 * 8 7 6 12 12 H 1.08993 * 113.85770 * 23.25175 * 11 8 7 13 13 C 1.52995 * 113.75614 * 251.90178 * 11 8 7 14 14 N 1.46499 * 109.47595 * 58.93335 * 13 11 8 15 15 C 1.34778 * 120.00278 * 179.97438 * 14 13 11 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00123 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00074 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99873 * 23 21 19 27 27 N 1.28598 * 124.62182 * 89.99753 * 3 2 1 28 28 H 1.09001 * 109.47704 * 300.00186 * 1 2 3 29 29 H 1.09002 * 109.46972 * 60.00316 * 1 2 3 30 30 H 1.08996 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47629 * 239.99233 * 2 1 3 32 32 H 1.09002 * 109.46972 * 119.99684 * 2 1 3 33 33 H 1.08003 * 127.04877 * 180.26816 * 5 4 3 34 34 H 1.08999 * 109.47035 * 334.71387 * 7 6 5 35 35 H 1.09000 * 109.47102 * 214.70594 * 7 6 5 36 36 H 1.08998 * 113.75583 * 108.09835 * 9 8 7 37 37 H 1.09004 * 113.85783 * 336.74656 * 9 8 7 38 38 H 1.08994 * 113.73625 * 269.35930 * 10 9 8 39 39 H 1.09008 * 113.82959 * 138.09031 * 10 9 8 40 40 H 1.09008 * 109.47218 * 298.93167 * 13 11 8 41 41 H 1.09007 * 109.47175 * 178.93516 * 13 11 8 42 42 H 0.97000 * 119.99972 * 359.97438 * 14 13 11 43 43 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 44 44 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 45 45 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2619 2.0700 -1.0584 5 6 2.6772 3.2633 -0.6985 6 6 2.6830 3.2614 0.6983 7 6 3.0839 4.3954 1.6062 8 7 1.8890 5.1549 1.9979 9 6 1.6288 6.2604 1.0496 10 6 1.3243 7.1170 2.2917 11 6 2.2045 6.1234 3.0711 12 1 3.2559 6.4076 3.1133 13 6 1.6357 5.7363 4.4376 14 7 2.1642 4.4287 4.8341 15 6 1.7985 3.8826 6.0107 16 8 1.0315 4.4734 6.7411 17 6 2.3427 2.5379 6.4188 18 16 1.6696 2.0799 8.0353 19 6 2.4480 0.5150 8.2587 20 1 3.1130 0.1294 7.5000 21 6 2.2115 -0.2194 9.4125 22 7 1.4014 0.2508 10.3374 23 14 3.0429 -1.8748 9.6529 24 1 4.3441 -1.6800 10.3413 25 1 2.1726 -2.7507 10.4779 26 1 3.2727 -2.5099 8.3303 27 7 2.2618 2.0701 1.0583 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8898 32 1 1.8932 -0.5138 0.8900 33 1 2.9592 4.0778 -1.3493 34 1 3.7767 5.0533 1.0815 35 1 3.5675 3.9942 2.4968 36 1 0.7635 6.0940 0.4080 37 1 2.5111 6.5848 0.4978 38 1 0.2759 7.1013 2.5892 39 1 1.7372 8.1247 2.2437 40 1 0.5484 5.6856 4.3774 41 1 1.9242 6.4840 5.1764 42 1 2.7774 3.9560 4.2497 43 1 3.4299 2.5888 6.4787 44 1 2.0542 1.7899 5.6803 45 1 1.2359 -0.2626 11.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754472834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = 108.278749 kcal Electronic energy + Delta-G solvation = -26640.250317 eV Core-core repulsion = 22823.081472 eV Total energy + Delta-G solvation = -3817.168845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.71436 -40.49977 -38.74001 -35.30690 -34.20586 -33.05445 -32.38231 -31.81228 -30.04640 -29.40147 -27.54247 -25.57838 -25.42937 -24.18182 -23.32893 -22.09445 -20.95011 -20.34174 -19.82671 -17.82858 -17.57576 -16.96108 -16.41697 -16.19502 -16.01861 -15.44320 -15.20488 -14.94142 -14.77279 -14.74149 -14.40718 -13.88471 -13.76894 -13.56387 -13.08879 -13.04754 -12.66711 -12.51653 -12.48277 -12.18917 -11.90416 -11.74314 -11.62565 -11.37172 -11.26371 -11.03327 -10.98757 -10.97531 -10.89718 -10.71522 -10.37836 -9.76533 -9.44588 -9.28842 -9.11638 -9.02541 -8.72196 -8.16775 -6.43586 -6.17195 -3.86647 1.66083 2.10299 2.18414 3.08901 3.23133 3.24976 3.30007 3.33976 3.54579 3.81508 3.86872 4.19165 4.24936 4.41005 4.46860 4.52560 4.57921 4.76038 4.80661 4.85000 4.93886 4.98140 5.03506 5.12542 5.17754 5.25151 5.29606 5.35469 5.37815 5.47101 5.61360 5.69581 5.71119 5.80479 5.86359 5.93130 5.97587 6.00183 6.07722 6.24487 6.53505 6.68046 6.76634 7.64153 7.84050 8.19284 8.40005 8.74456 9.28074 10.90288 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009205 B = 0.003026 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.090015 B = 9250.670729 C =11683.228260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.136 3.864 3 N -0.154 5.154 4 N -0.293 5.293 5 C -0.024 4.024 6 C 0.010 3.990 7 C 0.108 3.892 8 N -0.464 5.464 9 C 0.002 3.998 10 C -0.134 4.134 11 C 0.019 3.981 12 H 0.088 0.912 13 C 0.143 3.857 14 N -0.731 5.731 15 C 0.532 3.468 16 O -0.521 6.521 17 C -0.152 4.152 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.263 5.263 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.191 0.809 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.395 0.605 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 9.220 -26.167 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 N -0.055 5.055 4 N -0.133 5.133 5 C -0.207 4.207 6 C -0.153 4.153 7 C -0.022 4.022 8 N -0.188 5.188 9 C -0.126 4.126 10 C -0.173 4.173 11 C -0.091 4.091 12 H 0.106 0.894 13 C 0.018 3.982 14 N -0.386 5.386 15 C 0.319 3.681 16 O -0.396 6.396 17 C -0.302 4.302 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.105 5.105 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.208 0.792 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.229 0.771 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.208 8.312 -24.672 26.063 hybrid contribution 2.733 -0.686 -1.275 3.093 sum 3.941 7.626 -25.947 27.330 Atomic orbital electron populations 1.22175 0.93013 1.03972 1.03742 1.22000 0.96189 0.74412 1.05763 1.48172 1.44758 1.13405 0.99204 1.73998 1.17305 1.05530 1.16492 1.24538 1.05748 0.95792 0.94628 1.22785 1.05226 0.93841 0.93491 1.20856 0.92356 0.91669 0.97344 1.68576 1.30468 1.15074 1.04674 1.23956 1.01929 0.91075 0.95676 1.23336 1.01375 0.97632 0.94916 1.23787 0.99570 0.92765 0.92957 0.89432 1.21168 0.99195 0.85261 0.92574 1.45879 1.50466 1.21008 1.21210 1.20256 0.80671 0.86901 0.80318 1.90690 1.34350 1.62735 1.51804 1.23512 1.04123 0.96065 1.06537 1.85360 1.61597 1.23340 1.13076 1.22879 1.32656 1.04926 1.07745 0.91000 1.24985 0.95195 0.98515 0.94897 1.70027 1.34054 1.38067 1.08202 0.86185 0.79110 0.82014 0.78287 1.20302 1.20776 1.19729 1.74097 1.15673 1.05310 1.15418 0.91060 0.91656 0.89538 0.87577 0.87173 0.79178 0.91273 0.89400 0.89295 0.90888 0.88589 0.90417 0.91039 0.91132 0.77058 0.89483 0.89248 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.24 37.15 0.38 -0.90 16 2 C 0.14 1.09 7.26 -4.04 -0.03 1.06 16 3 N -0.15 -1.76 3.95 -10.62 -0.04 -1.81 16 4 N -0.29 -3.33 12.05 30.68 0.37 -2.96 16 5 C -0.02 -0.23 12.16 -17.21 -0.21 -0.44 16 6 C 0.01 0.11 6.91 -82.25 -0.57 -0.46 16 7 C 0.11 0.91 5.23 -4.97 -0.03 0.89 16 8 N -0.46 -4.21 5.83 -232.16 -1.35 -5.57 16 9 C 0.00 0.01 7.95 -2.77 -0.02 -0.01 16 10 C -0.13 -0.88 7.84 -25.80 -0.20 -1.08 16 11 C 0.02 0.15 3.38 -66.65 -0.23 -0.07 16 12 H 0.09 0.58 7.93 -51.93 -0.41 0.17 16 13 C 0.14 1.73 5.80 -4.04 -0.02 1.70 16 14 N -0.73 -10.66 5.50 -60.29 -0.33 -10.99 16 15 C 0.53 10.55 7.85 -10.99 -0.09 10.46 16 16 O -0.52 -12.32 15.86 5.56 0.09 -12.23 16 17 C -0.15 -3.24 6.16 36.00 0.22 -3.02 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.54 9.50 30.94 0.29 -15.24 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 23 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 N -0.26 -3.40 12.05 33.71 0.41 -3.00 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.19 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.07 0.40 7.38 -51.93 -0.38 0.02 16 35 H 0.09 0.78 6.40 -51.93 -0.33 0.45 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.33 7.48 -51.93 -0.39 -0.05 16 38 H 0.10 0.71 7.94 -51.93 -0.41 0.29 16 39 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 40 H 0.07 0.98 7.91 -51.92 -0.41 0.57 16 41 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.40 5.00 6.54 -40.82 -0.27 4.73 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -37.95 392.85 -8.84 -46.78 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.80 Total: 1.97 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.59 Total: -5.08 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.22 Total: -50.15 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.95 -8.84 -46.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754472834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.061 kcal (2) G-P(sol) polarization free energy of solvation -37.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds