Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47153 * 2 1 4 4 N 1.28606 * 124.61673 * 269.99520 * 3 2 1 5 5 C 1.31375 * 108.71795 * 179.71642 * 4 3 2 6 6 C 1.39680 * 105.90102 * 0.43079 * 5 4 3 7 7 C 1.50697 * 127.04960 * 179.83706 * 6 5 4 8 8 N 1.46907 * 109.47003 * 94.71147 * 7 6 5 9 9 C 1.47960 * 110.99970 * 269.35874 * 8 7 6 10 10 C 1.53930 * 86.17948 * 222.41657 * 9 8 7 11 11 C 1.47965 * 110.99979 * 169.99884 * 8 7 6 12 12 H 1.08993 * 113.85770 * 23.25175 * 11 8 7 13 13 C 1.52995 * 113.75614 * 251.90178 * 11 8 7 14 14 N 1.46499 * 109.47595 * 58.93335 * 13 11 8 15 15 C 1.34778 * 120.00278 * 179.97438 * 14 13 11 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00123 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00074 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99873 * 23 21 19 27 27 N 1.28598 * 124.62182 * 89.99753 * 3 2 1 28 28 H 1.09001 * 109.47704 * 300.00186 * 1 2 3 29 29 H 1.09002 * 109.46972 * 60.00316 * 1 2 3 30 30 H 1.08996 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47629 * 239.99233 * 2 1 3 32 32 H 1.09002 * 109.46972 * 119.99684 * 2 1 3 33 33 H 1.08003 * 127.04877 * 180.26816 * 5 4 3 34 34 H 1.08999 * 109.47035 * 334.71387 * 7 6 5 35 35 H 1.09000 * 109.47102 * 214.70594 * 7 6 5 36 36 H 1.08998 * 113.75583 * 108.09835 * 9 8 7 37 37 H 1.09004 * 113.85783 * 336.74656 * 9 8 7 38 38 H 1.08994 * 113.73625 * 269.35930 * 10 9 8 39 39 H 1.09008 * 113.82959 * 138.09031 * 10 9 8 40 40 H 1.09008 * 109.47218 * 298.93167 * 13 11 8 41 41 H 1.09007 * 109.47175 * 178.93516 * 13 11 8 42 42 H 0.97000 * 119.99972 * 359.97438 * 14 13 11 43 43 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 44 44 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 45 45 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2619 2.0700 -1.0584 5 6 2.6772 3.2633 -0.6985 6 6 2.6830 3.2614 0.6983 7 6 3.0839 4.3954 1.6062 8 7 1.8890 5.1549 1.9979 9 6 1.6288 6.2604 1.0496 10 6 1.3243 7.1170 2.2917 11 6 2.2045 6.1234 3.0711 12 1 3.2559 6.4076 3.1133 13 6 1.6357 5.7363 4.4376 14 7 2.1642 4.4287 4.8341 15 6 1.7985 3.8826 6.0107 16 8 1.0315 4.4734 6.7411 17 6 2.3427 2.5379 6.4188 18 16 1.6696 2.0799 8.0353 19 6 2.4480 0.5150 8.2587 20 1 3.1130 0.1294 7.5000 21 6 2.2115 -0.2194 9.4125 22 7 1.4014 0.2508 10.3374 23 14 3.0429 -1.8748 9.6529 24 1 4.3441 -1.6800 10.3413 25 1 2.1726 -2.7507 10.4779 26 1 3.2727 -2.5099 8.3303 27 7 2.2618 2.0701 1.0583 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8898 32 1 1.8932 -0.5138 0.8900 33 1 2.9592 4.0778 -1.3493 34 1 3.7767 5.0533 1.0815 35 1 3.5675 3.9942 2.4968 36 1 0.7635 6.0940 0.4080 37 1 2.5111 6.5848 0.4978 38 1 0.2759 7.1013 2.5892 39 1 1.7372 8.1247 2.2437 40 1 0.5484 5.6856 4.3774 41 1 1.9242 6.4840 5.1764 42 1 2.7774 3.9560 4.2497 43 1 3.4299 2.5888 6.4787 44 1 2.0542 1.7899 5.6803 45 1 1.2359 -0.2626 11.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754472834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = 78.207594 kcal Electronic energy + Delta-G solvation = -26641.554300 eV Core-core repulsion = 22823.081472 eV Total energy + Delta-G solvation = -3818.472828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.47367 -41.25716 -40.17835 -36.00515 -35.52089 -34.58859 -33.79590 -32.54350 -31.47061 -30.13844 -28.67043 -27.62636 -26.22230 -24.84410 -24.15268 -22.79531 -21.86595 -21.59905 -20.57394 -19.79437 -18.32187 -17.86188 -17.66166 -17.39126 -16.91667 -16.88404 -16.46163 -16.07808 -15.90805 -15.86148 -15.48658 -15.06617 -14.65498 -14.63193 -14.46116 -14.26541 -13.69862 -13.66932 -13.19266 -13.17036 -13.11299 -12.90150 -12.82169 -12.63383 -12.42537 -12.36448 -12.02663 -11.89318 -11.76251 -11.71168 -11.65025 -11.19634 -11.14730 -10.92633 -10.29154 -10.13710 -10.05765 -9.71279 -8.67133 -8.34978 -6.13163 0.87521 1.26127 1.41734 1.43444 1.46084 1.48340 1.57130 1.62972 2.25294 2.29564 2.97059 2.98816 3.18473 3.32268 3.60915 3.76701 3.86923 3.88093 3.91810 4.01646 4.15221 4.17750 4.23738 4.26590 4.35558 4.42389 4.48131 4.49273 4.51760 4.68299 4.70836 4.77037 4.87727 4.91393 5.05835 5.06458 5.14902 5.26621 5.31068 5.39313 5.40970 5.54038 5.81182 6.11502 6.19386 6.49180 7.05914 7.24840 7.42410 8.74421 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009205 B = 0.003026 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.090015 B = 9250.670729 C =11683.228260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 N -0.163 5.163 4 N -0.311 5.311 5 C -0.021 4.021 6 C 0.004 3.996 7 C 0.108 3.892 8 N -0.495 5.495 9 C 0.010 3.990 10 C -0.127 4.127 11 C 0.027 3.973 12 H 0.114 0.886 13 C 0.139 3.861 14 N -0.706 5.706 15 C 0.532 3.468 16 O -0.566 6.566 17 C -0.128 4.128 18 S -0.146 6.146 19 C -0.548 4.548 20 H 0.080 0.920 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.259 1.259 27 N -0.304 5.304 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.225 0.775 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.408 0.592 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.626 9.415 -28.622 30.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.008 3.992 3 N -0.065 5.065 4 N -0.152 5.152 5 C -0.204 4.204 6 C -0.159 4.159 7 C -0.022 4.022 8 N -0.219 5.219 9 C -0.118 4.118 10 C -0.165 4.165 11 C -0.083 4.083 12 H 0.132 0.868 13 C 0.015 3.985 14 N -0.359 5.359 15 C 0.318 3.682 16 O -0.445 6.445 17 C -0.279 4.279 18 S 0.081 5.919 19 C -0.696 4.696 20 H 0.098 0.902 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.183 1.183 27 N -0.146 5.146 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.130 0.870 33 H 0.242 0.758 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.244 0.756 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.328 8.517 -27.187 28.684 hybrid contribution 2.056 -0.658 -0.627 2.248 sum 5.384 7.859 -27.815 29.401 Atomic orbital electron populations 1.22115 0.92872 1.05010 1.02071 1.22269 0.96312 0.73661 1.06929 1.48463 1.45065 1.14123 0.98869 1.73968 1.17961 1.06432 1.16825 1.25124 1.04563 0.95995 0.94730 1.23255 1.04476 0.93727 0.94445 1.20992 0.92616 0.91472 0.97072 1.68521 1.31244 1.16322 1.05846 1.24011 1.02854 0.89674 0.95271 1.23296 1.00344 0.98587 0.94323 1.23774 1.01060 0.93104 0.90311 0.86787 1.21382 0.98251 0.83593 0.95290 1.45688 1.49305 1.21655 1.19256 1.20021 0.80381 0.86317 0.81485 1.90675 1.36551 1.63697 1.53597 1.23341 1.04852 0.97359 1.02348 1.85513 1.63412 1.24402 1.18583 1.23196 1.32893 1.05037 1.08427 0.90176 1.26132 0.95655 1.03006 0.94270 1.70188 1.35608 1.40023 1.08891 0.84953 0.78021 0.76204 0.78787 1.19149 1.20124 1.18327 1.74050 1.17130 1.06727 1.16703 0.93689 0.92145 0.87163 0.85424 0.86988 0.75841 0.87866 0.90210 0.90082 0.87923 0.90078 0.87919 0.93089 0.91031 0.75566 0.87439 0.88232 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.24 71.98 0.74 -1.68 16 2 C 0.13 1.98 7.26 86.38 0.63 2.61 16 3 N -0.16 -3.67 3.95 -187.52 -0.74 -4.41 16 4 N -0.31 -6.71 12.05 -56.86 -0.69 -7.40 16 5 C -0.02 -0.37 12.16 85.11 1.03 0.67 16 6 C 0.00 0.09 6.91 42.97 0.30 0.38 16 7 C 0.11 1.53 5.23 85.55 0.45 1.98 16 8 N -0.50 -7.82 5.83 -888.41 -5.18 -13.00 16 9 C 0.01 0.10 7.95 86.40 0.69 0.78 16 10 C -0.13 -1.31 7.84 31.24 0.24 -1.07 16 11 C 0.03 0.37 3.38 45.02 0.15 0.52 16 12 H 0.11 1.04 7.93 -2.39 -0.02 1.02 16 13 C 0.14 3.24 5.80 86.38 0.50 3.75 16 14 N -0.71 -20.05 5.50 -463.06 -2.55 -22.59 16 15 C 0.53 21.29 7.85 87.66 0.69 21.98 16 16 O -0.57 -27.67 15.86 -3.02 -0.05 -27.72 16 17 C -0.13 -5.48 6.16 71.23 0.44 -5.04 16 18 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 19 C -0.55 -32.22 9.50 67.96 0.65 -31.58 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.82 5.49 84.86 0.47 1.29 16 22 N -0.91 -56.85 13.22 21.65 0.29 -56.57 16 23 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 N -0.30 -7.72 12.05 -47.25 -0.57 -8.29 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.23 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.10 0.72 7.38 -2.39 -0.02 0.70 16 35 H 0.08 1.23 6.40 -2.39 -0.02 1.21 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 0.41 7.48 -2.39 -0.02 0.40 16 38 H 0.08 1.10 7.94 -2.39 -0.02 1.08 16 39 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.05 1.42 7.91 -2.38 -0.02 1.40 16 41 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.41 9.71 6.54 -92.71 -0.61 9.10 16 43 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 44 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 45 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -86.04 392.85 -1.25 -87.30 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.40 Total: 21.30 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.97 Total: -5.41 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -9.43 Total: -112.25 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -86.04 -1.25 -87.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754472834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.504 kcal (2) G-P(sol) polarization free energy of solvation -86.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds