Wall clock time and date at job start Sat Apr 11 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47023 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 120.00267 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99650 * 3 2 1 7 7 C 1.37879 * 119.99619 * 180.27282 * 2 1 3 8 8 H 1.08000 * 119.99747 * 200.75664 * 7 2 1 9 9 C 1.50694 * 120.00510 * 20.76255 * 7 2 1 10 10 H 1.09002 * 109.46712 * 305.39262 * 9 7 2 11 11 N 1.46497 * 109.47320 * 185.39297 * 9 7 2 12 12 C 1.34783 * 119.99988 * 154.99785 * 11 9 7 13 13 O 1.21583 * 119.99880 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99680 * 179.97438 * 12 11 9 15 15 C 1.46505 * 119.99644 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46696 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46645 * 180.02562 * 16 15 14 18 18 N 1.46902 * 109.46902 * 180.02562 * 17 16 15 19 19 C 1.47014 * 110.99890 * 293.63718 * 18 17 16 20 20 C 1.53100 * 109.25296 * 177.60971 * 19 18 17 21 21 O 1.43007 * 109.26077 * 56.84907 * 20 19 18 22 22 C 1.43014 * 113.73888 * 301.32497 * 21 20 19 23 23 C 1.47012 * 110.99680 * 170.00214 * 18 17 16 24 24 C 1.52999 * 109.47389 * 65.38984 * 9 7 2 25 25 F 1.39895 * 109.47124 * 54.83140 * 24 9 7 26 26 F 1.39896 * 109.47342 * 174.83935 * 24 9 7 27 27 F 1.39903 * 109.47058 * 294.83544 * 24 9 7 28 28 H 0.97007 * 120.00535 * 175.54333 * 1 2 3 29 29 H 0.96998 * 120.00026 * 334.99640 * 11 9 7 30 30 H 0.96998 * 120.00335 * 0.02562 * 14 12 11 31 31 H 1.08992 * 109.47280 * 300.00508 * 15 14 12 32 32 H 1.08999 * 109.46480 * 60.00638 * 15 14 12 33 33 H 1.08992 * 109.47417 * 300.00112 * 16 15 14 34 34 H 1.08995 * 109.46918 * 60.00997 * 16 15 14 35 35 H 1.08992 * 109.47246 * 300.00145 * 17 16 15 36 36 H 1.09005 * 109.46975 * 60.00325 * 17 16 15 37 37 H 1.08995 * 109.50822 * 297.53896 * 19 18 17 38 38 H 1.08995 * 109.51051 * 57.67495 * 19 18 17 39 39 H 1.09004 * 109.50337 * 296.90907 * 20 19 18 40 40 H 1.09001 * 109.53940 * 176.80713 * 20 19 18 41 41 H 1.09003 * 109.50853 * 298.73786 * 22 21 20 42 42 H 1.09000 * 109.54425 * 178.62724 * 22 21 20 43 43 H 1.08997 * 109.50631 * 302.32703 * 23 18 17 44 44 H 1.09000 * 109.51035 * 62.41816 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0318 -1.2260 0.3256 9 6 1.3244 -2.4546 -0.4743 10 1 0.4045 -2.6029 0.0913 11 7 2.2163 -3.5976 -0.2645 12 6 1.7029 -4.8354 -0.1198 13 8 0.4995 -5.0033 -0.1638 14 7 2.5235 -5.8870 0.0727 15 6 1.9654 -7.2324 0.2306 16 6 3.1026 -8.2355 0.4343 17 6 2.5197 -9.6406 0.5986 18 7 3.6115 -10.6037 0.7948 19 6 4.4396 -10.7149 -0.4148 20 6 5.5968 -11.6810 -0.1472 21 8 5.0704 -12.9446 0.2665 22 6 4.2593 -12.8733 1.4423 23 6 3.0885 -11.9194 1.1909 24 6 0.9935 -2.3324 -1.9631 25 9 2.1574 -2.0249 -2.6758 26 9 0.4699 -3.5444 -2.4255 27 9 0.0505 -1.3158 -2.1493 28 1 -0.4851 -0.8375 -0.0653 29 1 3.1764 -3.4637 -0.2298 30 1 3.4836 -5.7531 0.1074 31 1 1.3043 -7.2521 1.0969 32 1 1.4012 -7.4987 -0.6632 33 1 3.7639 -8.2159 -0.4318 34 1 3.6664 -7.9689 1.3282 35 1 1.8581 -9.6606 1.4645 36 1 1.9560 -9.9070 -0.2956 37 1 3.8330 -11.0927 -1.2378 38 1 4.8372 -9.7340 -0.6752 39 1 6.2339 -11.2767 0.6395 40 1 6.1814 -11.8108 -1.0581 41 1 4.8575 -12.5038 2.2752 42 1 3.8758 -13.8651 1.6814 43 1 2.4997 -11.8176 2.1025 44 1 2.4597 -12.3161 0.3938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932929678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:36 Heat of formation + Delta-G solvation = -227.829980 kcal Electronic energy + Delta-G solvation = -30139.428891 eV Core-core repulsion = 25290.782916 eV Total energy + Delta-G solvation = -4848.645975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.75469 -46.28901 -46.22475 -40.01065 -39.44068 -36.89639 -35.31500 -34.48360 -32.75099 -31.77516 -31.38467 -28.44660 -27.30366 -24.54005 -24.45557 -24.25766 -21.89844 -21.54918 -20.80212 -20.30845 -18.42068 -17.46860 -17.10330 -17.05202 -16.93274 -16.58135 -16.43505 -16.01632 -15.48800 -15.39963 -15.18186 -14.94096 -14.41291 -14.09639 -13.89779 -13.73911 -13.42899 -13.19971 -13.01255 -12.84731 -12.72430 -12.57797 -12.49399 -12.43444 -12.37234 -12.24973 -11.88310 -11.71371 -11.61362 -11.33861 -11.10983 -11.03309 -10.84800 -10.78367 -10.21318 -10.10185 -9.69966 -9.48321 -8.90234 -8.82998 -8.44693 -8.32556 -6.74992 -4.51033 2.98660 3.30240 3.35285 3.37264 3.49204 3.54343 3.66127 4.20746 4.30495 4.40288 4.49915 4.53875 4.66059 4.72575 4.75426 4.85424 4.91935 4.93157 5.02213 5.09687 5.19516 5.27085 5.35205 5.36988 5.45556 5.48230 5.52495 5.59437 5.60481 5.72925 5.92213 5.96952 6.50268 6.51025 6.58586 6.71026 6.71709 7.04885 7.19194 7.54154 8.08658 8.42400 8.54222 9.07692 9.21414 10.61898 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.002027 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.715401 B =13807.235262 C =14016.490590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.039 3.961 3 Si 1.073 2.927 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.638 4.638 8 H 0.073 0.927 9 C 0.252 3.748 10 H 0.079 0.921 11 N -0.721 5.721 12 C 0.699 3.301 13 O -0.586 6.586 14 N -0.752 5.752 15 C 0.143 3.857 16 C -0.127 4.127 17 C 0.059 3.941 18 N -0.537 5.537 19 C 0.013 3.987 20 C 0.063 3.937 21 O -0.387 6.387 22 C 0.064 3.936 23 C 0.017 3.983 24 C 0.413 3.587 25 F -0.196 7.196 26 F -0.206 7.206 27 F -0.178 7.178 28 H 0.279 0.721 29 H 0.396 0.604 30 H 0.393 0.607 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.124 -20.499 1.784 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.174 4.174 3 Si 0.898 3.102 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.674 4.674 8 H 0.091 0.909 9 C 0.145 3.855 10 H 0.096 0.904 11 N -0.374 5.374 12 C 0.399 3.601 13 O -0.464 6.464 14 N -0.409 5.409 15 C 0.017 3.983 16 C -0.165 4.165 17 C -0.069 4.069 18 N -0.262 5.262 19 C -0.115 4.115 20 C -0.014 4.014 21 O -0.306 6.306 22 C -0.013 4.013 23 C -0.112 4.112 24 C 0.357 3.643 25 F -0.177 7.177 26 F -0.187 7.187 27 F -0.160 7.160 28 H 0.091 0.909 29 H 0.230 0.770 30 H 0.227 0.773 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.061 -19.024 2.061 21.172 hybrid contribution 0.401 -1.571 -0.971 1.890 sum 9.462 -20.595 1.090 22.691 Atomic orbital electron populations 1.70745 1.07140 1.32453 1.38280 1.26004 0.95999 1.03016 0.92366 0.83494 0.75141 0.74521 0.77000 1.20368 1.21022 1.20735 1.21657 1.01690 0.91500 1.52522 0.90912 1.19594 0.94327 0.86009 0.85595 0.90375 1.45082 1.10428 1.05167 1.76678 1.16070 0.85497 0.80699 0.77883 1.90909 1.12969 1.84482 1.58022 1.45028 1.09219 1.06446 1.80204 1.21004 0.95302 0.80122 1.01852 1.21773 0.98252 0.93345 1.03137 1.22022 0.92364 0.91278 1.01285 1.62199 1.22053 1.08227 1.33733 1.22871 0.96087 1.01080 0.91501 1.22680 0.94615 0.83502 1.00576 1.87986 1.67559 1.29989 1.45061 1.22668 0.91266 0.99504 0.87906 1.22795 0.97435 0.89451 1.01479 1.23135 0.73673 0.72405 0.95066 1.93019 1.50018 1.93159 1.81538 1.93092 1.87410 1.46821 1.91423 1.93142 1.65865 1.60786 1.96197 0.90908 0.76985 0.77343 0.91719 0.91962 0.91310 0.90262 0.90030 0.94150 0.93813 0.89129 0.92163 0.88412 0.92172 0.88438 0.89418 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.40 12.43 55.43 0.69 -23.71 16 2 C 0.04 1.03 4.72 -17.82 -0.08 0.95 16 3 Si 1.07 23.51 29.95 -169.99 -5.09 18.42 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.64 -16.39 8.21 -34.44 -0.28 -16.67 16 8 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.25 6.23 1.92 -69.09 -0.13 6.10 16 10 H 0.08 2.16 6.61 -51.93 -0.34 1.82 16 11 N -0.72 -14.72 5.03 -59.82 -0.30 -15.02 16 12 C 0.70 13.87 7.98 -86.91 -0.69 13.17 16 13 O -0.59 -14.06 14.96 5.29 0.08 -13.98 16 14 N -0.75 -10.65 5.56 -65.22 -0.36 -11.01 16 15 C 0.14 1.71 5.67 -4.04 -0.02 1.69 16 16 C -0.13 -1.07 5.26 -26.73 -0.14 -1.21 16 17 C 0.06 0.47 4.96 -3.82 -0.02 0.45 16 18 N -0.54 -4.28 4.73 -234.31 -1.11 -5.39 16 19 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 20 C 0.06 0.45 7.01 37.21 0.26 0.71 16 21 O -0.39 -3.46 10.83 -35.23 -0.38 -3.85 16 22 C 0.06 0.43 7.01 37.21 0.26 0.70 16 23 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 24 C 0.41 10.39 2.82 37.16 0.10 10.50 16 25 F -0.20 -4.73 16.87 2.25 0.04 -4.70 16 26 F -0.21 -5.12 15.54 2.25 0.04 -5.09 16 27 F -0.18 -4.78 14.13 2.25 0.03 -4.75 16 28 H 0.28 8.11 6.04 -40.82 -0.25 7.86 16 29 H 0.40 6.92 8.54 -40.82 -0.35 6.57 16 30 H 0.39 4.35 8.49 -40.82 -0.35 4.00 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.55 6.52 -51.93 -0.34 0.21 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.61 6.38 -51.93 -0.33 0.28 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -32.49 365.90 -7.87 -40.36 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.22 Total: 6.63 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -0.79 Total: 16.55 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -1.08 Total: -55.12 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.30 Total: -17.82 kcal Atomic # 9 Polarization: -14.64 SS G_CDS: 0.10 Total: -14.53 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.09 Total: 18.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.49 -7.87 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932929678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.468 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds