Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47023 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 120.00267 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99650 * 3 2 1 7 7 C 1.37879 * 119.99619 * 180.27282 * 2 1 3 8 8 H 1.08000 * 119.99747 * 200.75664 * 7 2 1 9 9 C 1.50694 * 120.00510 * 20.76255 * 7 2 1 10 10 H 1.09002 * 109.46712 * 305.39262 * 9 7 2 11 11 N 1.46497 * 109.47320 * 185.39297 * 9 7 2 12 12 C 1.34783 * 119.99988 * 154.99785 * 11 9 7 13 13 O 1.21583 * 119.99880 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99680 * 179.97438 * 12 11 9 15 15 C 1.46505 * 119.99644 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46696 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46645 * 180.02562 * 16 15 14 18 18 N 1.46902 * 109.46902 * 180.02562 * 17 16 15 19 19 C 1.47014 * 110.99890 * 293.63718 * 18 17 16 20 20 C 1.53100 * 109.25296 * 177.60971 * 19 18 17 21 21 O 1.43007 * 109.26077 * 56.84907 * 20 19 18 22 22 C 1.43014 * 113.73888 * 301.32497 * 21 20 19 23 23 C 1.47012 * 110.99680 * 170.00214 * 18 17 16 24 24 C 1.52999 * 109.47389 * 65.38984 * 9 7 2 25 25 F 1.39895 * 109.47124 * 54.83140 * 24 9 7 26 26 F 1.39896 * 109.47342 * 174.83935 * 24 9 7 27 27 F 1.39903 * 109.47058 * 294.83544 * 24 9 7 28 28 H 0.97007 * 120.00535 * 175.54333 * 1 2 3 29 29 H 0.96998 * 120.00026 * 334.99640 * 11 9 7 30 30 H 0.96998 * 120.00335 * 0.02562 * 14 12 11 31 31 H 1.08992 * 109.47280 * 300.00508 * 15 14 12 32 32 H 1.08999 * 109.46480 * 60.00638 * 15 14 12 33 33 H 1.08992 * 109.47417 * 300.00112 * 16 15 14 34 34 H 1.08995 * 109.46918 * 60.00997 * 16 15 14 35 35 H 1.08992 * 109.47246 * 300.00145 * 17 16 15 36 36 H 1.09005 * 109.46975 * 60.00325 * 17 16 15 37 37 H 1.08995 * 109.50822 * 297.53896 * 19 18 17 38 38 H 1.08995 * 109.51051 * 57.67495 * 19 18 17 39 39 H 1.09004 * 109.50337 * 296.90907 * 20 19 18 40 40 H 1.09001 * 109.53940 * 176.80713 * 20 19 18 41 41 H 1.09003 * 109.50853 * 298.73786 * 22 21 20 42 42 H 1.09000 * 109.54425 * 178.62724 * 22 21 20 43 43 H 1.08997 * 109.50631 * 302.32703 * 23 18 17 44 44 H 1.09000 * 109.51035 * 62.41816 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0318 -1.2260 0.3256 9 6 1.3244 -2.4546 -0.4743 10 1 0.4045 -2.6029 0.0913 11 7 2.2163 -3.5976 -0.2645 12 6 1.7029 -4.8354 -0.1198 13 8 0.4995 -5.0033 -0.1638 14 7 2.5235 -5.8870 0.0727 15 6 1.9654 -7.2324 0.2306 16 6 3.1026 -8.2355 0.4343 17 6 2.5197 -9.6406 0.5986 18 7 3.6115 -10.6037 0.7948 19 6 4.4396 -10.7149 -0.4148 20 6 5.5968 -11.6810 -0.1472 21 8 5.0704 -12.9446 0.2665 22 6 4.2593 -12.8733 1.4423 23 6 3.0885 -11.9194 1.1909 24 6 0.9935 -2.3324 -1.9631 25 9 2.1574 -2.0249 -2.6758 26 9 0.4699 -3.5444 -2.4255 27 9 0.0505 -1.3158 -2.1493 28 1 -0.4851 -0.8375 -0.0653 29 1 3.1764 -3.4637 -0.2298 30 1 3.4836 -5.7531 0.1074 31 1 1.3043 -7.2521 1.0969 32 1 1.4012 -7.4987 -0.6632 33 1 3.7639 -8.2159 -0.4318 34 1 3.6664 -7.9689 1.3282 35 1 1.8581 -9.6606 1.4645 36 1 1.9560 -9.9070 -0.2956 37 1 3.8330 -11.0927 -1.2378 38 1 4.8372 -9.7340 -0.6752 39 1 6.2339 -11.2767 0.6395 40 1 6.1814 -11.8108 -1.0581 41 1 4.8575 -12.5038 2.2752 42 1 3.8758 -13.8651 1.6814 43 1 2.4997 -11.8176 2.1025 44 1 2.4597 -12.3161 0.3938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932929678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -252.917487 kcal Electronic energy + Delta-G solvation = -30140.516767 eV Core-core repulsion = 25290.782916 eV Total energy + Delta-G solvation = -4849.733851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.79545 -48.32659 -48.27260 -41.06829 -40.52960 -37.72784 -36.83843 -35.87704 -34.59276 -32.67341 -32.07719 -30.02773 -28.27157 -26.50341 -25.31514 -24.99125 -23.65424 -22.43099 -21.96730 -21.32591 -20.13512 -19.35555 -19.02762 -18.87807 -18.36475 -17.64216 -17.20378 -16.93478 -16.69987 -16.14662 -15.98661 -15.79029 -15.74843 -15.61386 -15.28250 -15.21846 -15.09023 -14.84675 -14.77083 -14.68739 -14.53382 -14.48121 -14.25810 -13.66561 -13.36950 -13.21557 -12.98325 -12.96879 -12.63920 -12.53289 -12.35819 -12.26206 -11.91276 -11.74296 -11.48266 -11.41292 -11.35978 -10.67583 -10.47656 -10.42030 -9.87485 -9.44884 -8.84165 -6.60874 1.54735 1.61730 1.64916 1.85126 1.98657 2.28209 2.50305 2.68547 2.92354 2.95877 3.20542 3.44785 3.60387 3.77358 3.83131 3.91764 3.96742 4.03723 4.12142 4.19982 4.29376 4.38196 4.49687 4.54653 4.58946 4.65073 4.72684 4.74446 4.81818 4.90373 5.00486 5.10619 5.16025 5.30851 5.33573 5.47613 5.91086 5.92083 5.98048 6.09153 6.17666 6.31185 7.06788 7.19503 7.55749 8.51285 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.002027 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.715401 B =13807.235262 C =14016.490590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C -0.008 4.008 3 Si 1.116 2.884 4 H -0.286 1.286 5 H -0.258 1.258 6 H -0.268 1.268 7 C -0.639 4.639 8 H 0.087 0.913 9 C 0.258 3.742 10 H 0.043 0.957 11 N -0.715 5.715 12 C 0.694 3.306 13 O -0.631 6.631 14 N -0.728 5.728 15 C 0.142 3.858 16 C -0.109 4.109 17 C 0.061 3.939 18 N -0.541 5.541 19 C 0.012 3.988 20 C 0.061 3.939 21 O -0.409 6.409 22 C 0.062 3.938 23 C 0.016 3.984 24 C 0.414 3.586 25 F -0.188 7.188 26 F -0.205 7.205 27 F -0.190 7.190 28 H 0.262 0.738 29 H 0.412 0.588 30 H 0.412 0.588 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.545 -20.990 2.151 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.214 4.214 3 Si 0.936 3.064 4 H -0.212 1.212 5 H -0.183 1.183 6 H -0.194 1.194 7 C -0.675 4.675 8 H 0.105 0.895 9 C 0.149 3.851 10 H 0.060 0.940 11 N -0.370 5.370 12 C 0.394 3.606 13 O -0.512 6.512 14 N -0.386 5.386 15 C 0.017 3.983 16 C -0.147 4.147 17 C -0.068 4.068 18 N -0.267 5.267 19 C -0.116 4.116 20 C -0.015 4.015 21 O -0.328 6.328 22 C -0.015 4.015 23 C -0.112 4.112 24 C 0.358 3.642 25 F -0.169 7.169 26 F -0.187 7.187 27 F -0.172 7.172 28 H 0.073 0.927 29 H 0.249 0.751 30 H 0.249 0.751 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.562 -19.577 2.442 22.867 hybrid contribution -0.347 -1.537 -1.088 1.914 sum 11.215 -21.113 1.355 23.945 Atomic orbital electron populations 1.70869 1.08302 1.31442 1.40981 1.27441 0.95959 1.06650 0.91324 0.82963 0.74363 0.70557 0.78540 1.21176 1.18268 1.19352 1.21950 1.02179 0.91638 1.51748 0.89459 1.19195 0.93660 0.87402 0.84850 0.93965 1.44833 1.10708 1.04545 1.76872 1.16284 0.85359 0.81327 0.77678 1.90882 1.15247 1.85149 1.59954 1.44868 1.09736 1.05783 1.78164 1.21137 0.96616 0.79561 1.00963 1.21615 0.96818 0.92359 1.03944 1.21972 0.92479 0.91042 1.01271 1.62219 1.21941 1.08590 1.33915 1.22906 0.96022 1.01620 0.91017 1.22788 0.94548 0.82903 1.01286 1.87958 1.67954 1.31017 1.45844 1.22793 0.90990 1.00349 0.87362 1.22842 0.97599 0.89067 1.01702 1.23120 0.73628 0.72122 0.95357 1.93024 1.49424 1.93103 1.81373 1.93090 1.87462 1.46713 1.91422 1.93119 1.66445 1.61366 1.96280 0.92680 0.75096 0.75095 0.92558 0.93126 0.90214 0.89472 0.89719 0.94648 0.94738 0.88220 0.91855 0.87156 0.91910 0.86953 0.88309 0.94569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.20 12.43 21.45 0.27 -50.94 16 2 C -0.01 -0.40 4.72 84.66 0.40 0.00 16 3 Si 1.12 45.95 29.95 68.60 2.05 48.01 16 4 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.64 -32.33 8.21 25.60 0.21 -32.12 16 8 H 0.09 4.09 7.81 -2.91 -0.02 4.07 16 9 C 0.26 12.82 1.92 44.24 0.09 12.90 16 10 H 0.04 2.44 6.61 -2.39 -0.02 2.42 16 11 N -0.72 -28.60 5.03 -461.42 -2.32 -30.92 16 12 C 0.69 27.15 7.98 179.05 1.43 28.58 16 13 O -0.63 -30.72 14.96 -3.98 -0.06 -30.78 16 14 N -0.73 -19.41 5.56 -478.53 -2.66 -22.07 16 15 C 0.14 3.23 5.67 86.38 0.49 3.72 16 16 C -0.11 -1.60 5.26 30.60 0.16 -1.44 16 17 C 0.06 0.87 4.96 86.30 0.43 1.30 16 18 N -0.54 -7.67 4.73 -895.21 -4.23 -11.90 16 19 C 0.01 0.16 5.44 86.31 0.47 0.63 16 20 C 0.06 0.78 7.01 72.02 0.50 1.28 16 21 O -0.41 -6.78 10.83 -148.98 -1.61 -8.40 16 22 C 0.06 0.75 7.01 72.02 0.50 1.26 16 23 C 0.02 0.20 5.64 86.32 0.49 0.69 16 24 C 0.41 20.86 2.82 71.98 0.20 21.07 16 25 F -0.19 -8.87 16.87 44.97 0.76 -8.11 16 26 F -0.21 -10.27 15.54 44.97 0.70 -9.57 16 27 F -0.19 -10.39 14.13 44.97 0.64 -9.75 16 28 H 0.26 15.80 6.04 -92.70 -0.56 15.24 16 29 H 0.41 13.56 8.54 -92.71 -0.79 12.77 16 30 H 0.41 7.96 8.49 -92.71 -0.79 7.18 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.04 6.52 -2.39 -0.02 1.02 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.18 8.04 -2.39 -0.02 1.16 16 36 H 0.04 0.55 8.12 -2.38 -0.02 0.53 16 37 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 1.10 6.38 -2.39 -0.02 1.09 16 39 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.01 8.09 -2.39 -0.02 0.99 16 44 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -70.26 365.90 -1.42 -71.68 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -0.32 Total: 24.86 kcal Atomic # 6 Polarization: 32.51 SS G_CDS: 5.37 Total: 37.88 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -8.95 Total: -115.82 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.67 Total: -39.18 kcal Atomic # 9 Polarization: -29.53 SS G_CDS: 2.09 Total: -27.44 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.05 Total: 48.01 kcal Total: -70.26 -1.42 -71.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932929678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.237 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds