Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.46507 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.46774 * 179.97438 * 16 15 14 18 18 N 1.46900 * 109.46902 * 180.02562 * 17 16 15 19 19 C 1.47016 * 110.99660 * 293.63340 * 18 17 16 20 20 C 1.53100 * 109.25442 * 177.61191 * 19 18 17 21 21 O 1.43020 * 109.26079 * 56.84717 * 20 19 18 22 22 C 1.43012 * 113.73532 * 301.32878 * 21 20 19 23 23 C 1.47013 * 110.99983 * 170.00001 * 18 17 16 24 24 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 25 25 F 1.39903 * 109.47440 * 60.00123 * 24 9 7 26 26 F 1.39899 * 109.47255 * 180.02562 * 24 9 7 27 27 F 1.39900 * 109.47102 * 299.99874 * 24 9 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 30 30 H 0.97001 * 120.00313 * 359.97438 * 14 12 11 31 31 H 1.09005 * 109.46616 * 299.99557 * 15 14 12 32 32 H 1.08993 * 109.46852 * 59.99259 * 15 14 12 33 33 H 1.08996 * 109.47132 * 299.99032 * 16 15 14 34 34 H 1.09000 * 109.47229 * 59.99831 * 16 15 14 35 35 H 1.09005 * 109.46899 * 299.99693 * 17 16 15 36 36 H 1.09003 * 109.46817 * 59.99677 * 17 16 15 37 37 H 1.08999 * 109.50620 * 297.54221 * 19 18 17 38 38 H 1.08997 * 109.50869 * 57.67606 * 19 18 17 39 39 H 1.08998 * 109.50782 * 296.90955 * 20 19 18 40 40 H 1.08997 * 109.53907 * 176.80292 * 20 19 18 41 41 H 1.08992 * 109.50804 * 298.73775 * 22 21 20 42 42 H 1.09005 * 109.53954 * 178.62282 * 22 21 20 43 43 H 1.09001 * 109.50464 * 302.32377 * 23 18 17 44 44 H 1.09009 * 109.50639 * 62.40573 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 2.3147 -7.1408 -1.0299 16 6 3.4848 -8.1194 -0.9116 17 6 3.0690 -9.4813 -1.4715 18 7 4.1923 -10.4212 -1.3574 19 6 5.3068 -10.0182 -2.2273 20 6 6.4751 -10.9884 -2.0331 21 8 6.0317 -12.3210 -2.3035 22 6 4.9474 -12.7463 -1.4737 23 6 3.7636 -11.7940 -1.6622 24 6 0.3719 -2.5805 1.2490 25 9 -0.5373 -1.5171 1.2496 26 9 -0.3272 -3.7922 1.2493 27 9 1.1766 -2.5067 2.3910 28 1 -0.4850 0.8401 0.0004 29 1 3.0969 -3.4866 0.3545 30 1 3.6064 -5.7108 -0.1383 31 1 1.4635 -7.5216 -0.4654 32 1 2.0364 -7.0326 -2.0782 33 1 4.3356 -7.7385 -1.4764 34 1 3.7634 -8.2276 0.1366 35 1 2.2183 -9.8621 -0.9064 36 1 2.7901 -9.3734 -2.5197 37 1 4.9832 -10.0418 -3.2679 38 1 5.6249 -9.0086 -1.9672 39 1 6.8336 -10.9255 -1.0057 40 1 7.2829 -10.7278 -2.7170 41 1 5.2613 -12.7344 -0.4300 42 1 4.6494 -13.7570 -1.7528 43 1 2.9552 -12.0806 -0.9896 44 1 3.4145 -11.8458 -2.6936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932929679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -207.593389 kcal Electronic energy + Delta-G solvation = -30114.039048 eV Core-core repulsion = 25266.270597 eV Total energy + Delta-G solvation = -4847.768451 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.29997 -45.95118 -45.57108 -39.97866 -39.31669 -36.84640 -35.14292 -34.31127 -32.61716 -31.74690 -31.35589 -28.53138 -27.33253 -24.60996 -24.47700 -24.17106 -21.73618 -21.41825 -20.75807 -20.11343 -18.26673 -17.11896 -16.78668 -16.76332 -16.57309 -16.55185 -16.02583 -15.93265 -15.45891 -15.22731 -15.21090 -14.78992 -14.76789 -14.28102 -13.94677 -13.57676 -13.27565 -12.90443 -12.86214 -12.57070 -12.36748 -12.35365 -12.31680 -12.23847 -11.93958 -11.85675 -11.78054 -11.68011 -11.56004 -11.16024 -11.07520 -10.86557 -10.83452 -10.73309 -10.39017 -10.07711 -9.66161 -9.53569 -8.82353 -8.77968 -8.69479 -8.14411 -6.22330 -4.46226 3.07674 3.20156 3.25123 3.26920 3.40469 3.52705 3.80454 4.19740 4.43566 4.53280 4.56757 4.60509 4.74334 4.76082 4.82664 4.89177 4.94779 4.97028 5.07672 5.12764 5.22277 5.30732 5.38072 5.41355 5.48772 5.56115 5.63924 5.86922 5.91935 5.98338 6.02698 6.25661 6.53385 6.54715 6.73572 6.80425 6.86558 7.22856 7.38589 7.63571 7.70469 8.50335 8.67787 9.16155 9.27098 10.69267 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.002056 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.809067 B =13617.290614 C =14304.156912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.585 6.585 14 N -0.754 5.754 15 C 0.143 3.857 16 C -0.127 4.127 17 C 0.059 3.941 18 N -0.537 5.537 19 C 0.013 3.987 20 C 0.063 3.937 21 O -0.388 6.388 22 C 0.064 3.936 23 C 0.017 3.983 24 C 0.416 3.584 25 F -0.138 7.138 26 F -0.217 7.217 27 F -0.210 7.210 28 H 0.269 0.731 29 H 0.394 0.606 30 H 0.393 0.607 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.689 -19.253 -2.218 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.102 0.898 11 N -0.380 5.380 12 C 0.398 3.602 13 O -0.462 6.462 14 N -0.411 5.411 15 C 0.017 3.983 16 C -0.165 4.165 17 C -0.070 4.070 18 N -0.262 5.262 19 C -0.115 4.115 20 C -0.014 4.014 21 O -0.306 6.306 22 C -0.013 4.013 23 C -0.112 4.112 24 C 0.359 3.641 25 F -0.119 7.119 26 F -0.199 7.199 27 F -0.192 7.192 28 H 0.079 0.921 29 H 0.227 0.773 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.645 -19.368 -2.282 21.756 hybrid contribution 0.586 1.142 0.052 1.284 sum 10.230 -18.226 -2.230 21.019 Atomic orbital electron populations 1.70398 1.05840 1.27448 1.43582 1.25087 0.95164 1.00087 0.94113 0.86267 0.79318 0.81340 0.78863 1.20885 1.19845 1.19826 1.20836 0.93728 0.88130 1.56222 0.90570 1.19582 0.88261 0.84947 0.91559 0.89775 1.45266 1.17368 1.09748 1.65579 1.16071 0.84375 0.80527 0.79256 1.90915 1.19679 1.82944 1.52662 1.45053 1.16252 1.10765 1.69020 1.20985 0.96564 0.81527 0.99177 1.21774 0.98265 0.93667 1.02796 1.22027 0.93034 0.92022 0.99870 1.62200 1.08571 1.01979 1.53475 1.22870 0.92740 1.00403 0.95508 1.22681 0.95534 0.81541 1.01627 1.87987 1.51414 1.30540 1.60674 1.22664 0.86088 0.97370 0.95221 1.22794 0.98605 0.89203 1.00558 1.23183 0.80911 0.72786 0.87203 1.93400 1.68433 1.53840 1.96211 1.93071 1.81478 1.48347 1.96969 1.92981 1.74430 1.96196 1.55629 0.92070 0.77268 0.77439 0.91766 0.92013 0.91317 0.90319 0.90042 0.94150 0.93818 0.89106 0.92174 0.88425 0.92185 0.88459 0.89428 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.10 9.50 55.43 0.53 -22.57 16 2 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -14.08 8.46 -34.44 -0.29 -14.37 16 8 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 9 C 0.26 6.59 2.21 -69.09 -0.15 6.44 16 10 H 0.08 2.38 7.58 -51.93 -0.39 1.98 16 11 N -0.73 -14.94 4.99 -59.82 -0.30 -15.24 16 12 C 0.70 14.00 8.10 -86.92 -0.70 13.30 16 13 O -0.58 -14.22 14.92 5.29 0.08 -14.14 16 14 N -0.75 -10.80 5.56 -65.22 -0.36 -11.16 16 15 C 0.14 1.74 5.67 -4.04 -0.02 1.72 16 16 C -0.13 -1.09 5.26 -26.73 -0.14 -1.23 16 17 C 0.06 0.48 4.96 -3.82 -0.02 0.46 16 18 N -0.54 -4.34 4.73 -234.30 -1.11 -5.44 16 19 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 20 C 0.06 0.45 7.01 37.21 0.26 0.72 16 21 O -0.39 -3.49 10.83 -35.23 -0.38 -3.87 16 22 C 0.06 0.44 7.01 37.21 0.26 0.70 16 23 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 24 C 0.42 10.81 2.81 37.16 0.10 10.91 16 25 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 26 F -0.22 -5.64 15.67 2.25 0.04 -5.61 16 27 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 6.88 8.55 -40.82 -0.35 6.53 16 30 H 0.39 4.40 8.49 -40.82 -0.35 4.05 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.55 6.52 -51.93 -0.34 0.21 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.61 6.38 -51.93 -0.33 0.28 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 44 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -32.20 365.77 -8.15 -40.36 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.36 Total: 5.77 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: -0.84 Total: 20.40 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.24 Total: -54.42 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.30 Total: -18.01 kcal Atomic # 9 Polarization: -14.74 SS G_CDS: 0.10 Total: -14.64 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.20 -8.15 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932929679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.236 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds