Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.46507 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.46774 * 179.97438 * 16 15 14 18 18 N 1.46900 * 109.46902 * 180.02562 * 17 16 15 19 19 C 1.47016 * 110.99660 * 293.63340 * 18 17 16 20 20 C 1.53100 * 109.25442 * 177.61191 * 19 18 17 21 21 O 1.43020 * 109.26079 * 56.84717 * 20 19 18 22 22 C 1.43012 * 113.73532 * 301.32878 * 21 20 19 23 23 C 1.47013 * 110.99983 * 170.00001 * 18 17 16 24 24 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 25 25 F 1.39903 * 109.47440 * 60.00123 * 24 9 7 26 26 F 1.39899 * 109.47255 * 180.02562 * 24 9 7 27 27 F 1.39900 * 109.47102 * 299.99874 * 24 9 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 30 30 H 0.97001 * 120.00313 * 359.97438 * 14 12 11 31 31 H 1.09005 * 109.46616 * 299.99557 * 15 14 12 32 32 H 1.08993 * 109.46852 * 59.99259 * 15 14 12 33 33 H 1.08996 * 109.47132 * 299.99032 * 16 15 14 34 34 H 1.09000 * 109.47229 * 59.99831 * 16 15 14 35 35 H 1.09005 * 109.46899 * 299.99693 * 17 16 15 36 36 H 1.09003 * 109.46817 * 59.99677 * 17 16 15 37 37 H 1.08999 * 109.50620 * 297.54221 * 19 18 17 38 38 H 1.08997 * 109.50869 * 57.67606 * 19 18 17 39 39 H 1.08998 * 109.50782 * 296.90955 * 20 19 18 40 40 H 1.08997 * 109.53907 * 176.80292 * 20 19 18 41 41 H 1.08992 * 109.50804 * 298.73775 * 22 21 20 42 42 H 1.09005 * 109.53954 * 178.62282 * 22 21 20 43 43 H 1.09001 * 109.50464 * 302.32377 * 23 18 17 44 44 H 1.09009 * 109.50639 * 62.40573 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 2.3147 -7.1408 -1.0299 16 6 3.4848 -8.1194 -0.9116 17 6 3.0690 -9.4813 -1.4715 18 7 4.1923 -10.4212 -1.3574 19 6 5.3068 -10.0182 -2.2273 20 6 6.4751 -10.9884 -2.0331 21 8 6.0317 -12.3210 -2.3035 22 6 4.9474 -12.7463 -1.4737 23 6 3.7636 -11.7940 -1.6622 24 6 0.3719 -2.5805 1.2490 25 9 -0.5373 -1.5171 1.2496 26 9 -0.3272 -3.7922 1.2493 27 9 1.1766 -2.5067 2.3910 28 1 -0.4850 0.8401 0.0004 29 1 3.0969 -3.4866 0.3545 30 1 3.6064 -5.7108 -0.1383 31 1 1.4635 -7.5216 -0.4654 32 1 2.0364 -7.0326 -2.0782 33 1 4.3356 -7.7385 -1.4764 34 1 3.7634 -8.2276 0.1366 35 1 2.2183 -9.8621 -0.9064 36 1 2.7901 -9.3734 -2.5197 37 1 4.9832 -10.0418 -3.2679 38 1 5.6249 -9.0086 -1.9672 39 1 6.8336 -10.9255 -1.0057 40 1 7.2829 -10.7278 -2.7170 41 1 5.2613 -12.7344 -0.4300 42 1 4.6494 -13.7570 -1.7528 43 1 2.9552 -12.0806 -0.9896 44 1 3.4145 -11.8458 -2.6936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932929679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -232.368360 kcal Electronic energy + Delta-G solvation = -30115.113371 eV Core-core repulsion = 25266.270597 eV Total energy + Delta-G solvation = -4848.842774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.39056 -48.02351 -47.70413 -40.95632 -40.50062 -37.65953 -36.59857 -35.78974 -34.46257 -32.65422 -32.05851 -30.14831 -28.26739 -26.56921 -25.26437 -24.96410 -23.39724 -22.38345 -21.82091 -21.29937 -19.91837 -18.86062 -18.74933 -18.53593 -17.95215 -17.49529 -17.17844 -16.92799 -16.73323 -16.43078 -16.08552 -15.95641 -15.67284 -15.42949 -15.17518 -14.99849 -14.90929 -14.61576 -14.50295 -14.42927 -14.27008 -14.00309 -13.85419 -13.61724 -13.24952 -13.05571 -12.92904 -12.74653 -12.62091 -12.57063 -12.33065 -12.22997 -12.20610 -11.71358 -11.58472 -11.43370 -11.26354 -10.66479 -10.65615 -10.30416 -9.75749 -9.42271 -8.19554 -6.50487 1.47687 1.50568 1.58429 1.73806 2.15527 2.38328 2.58216 2.72038 2.96045 2.97961 3.35962 3.80927 3.85763 3.90370 3.94288 3.99581 4.07168 4.14820 4.21906 4.22619 4.32144 4.40943 4.53023 4.58629 4.67648 4.74448 4.76551 4.83826 4.89703 4.93038 5.02519 5.15350 5.20435 5.44945 5.52719 5.57157 5.66879 5.94051 5.94576 6.15972 6.19345 6.54591 7.17766 7.23052 7.67223 8.73073 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.002056 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.809067 B =13617.290614 C =14304.156912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.013 3.987 3 Si 0.985 3.015 4 H -0.286 1.286 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.271 3.729 10 H 0.045 0.955 11 N -0.721 5.721 12 C 0.693 3.307 13 O -0.631 6.631 14 N -0.730 5.730 15 C 0.142 3.858 16 C -0.109 4.109 17 C 0.061 3.939 18 N -0.542 5.542 19 C 0.013 3.987 20 C 0.061 3.939 21 O -0.409 6.409 22 C 0.062 3.938 23 C 0.016 3.984 24 C 0.412 3.588 25 F -0.151 7.151 26 F -0.219 7.219 27 F -0.203 7.203 28 H 0.268 0.732 29 H 0.411 0.589 30 H 0.412 0.588 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.993 -19.578 -1.861 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.111 0.889 9 C 0.163 3.837 10 H 0.063 0.937 11 N -0.375 5.375 12 C 0.393 3.607 13 O -0.512 6.512 14 N -0.388 5.388 15 C 0.018 3.982 16 C -0.147 4.147 17 C -0.068 4.068 18 N -0.267 5.267 19 C -0.115 4.115 20 C -0.015 4.015 21 O -0.328 6.328 22 C -0.015 4.015 23 C -0.112 4.112 24 C 0.356 3.644 25 F -0.132 7.132 26 F -0.201 7.201 27 F -0.185 7.185 28 H 0.078 0.922 29 H 0.247 0.753 30 H 0.248 0.752 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.028 -19.743 -1.911 23.198 hybrid contribution -0.143 1.143 -0.061 1.154 sum 11.885 -18.600 -1.972 22.161 Atomic orbital electron populations 1.70536 1.07516 1.28210 1.44650 1.26027 0.95915 1.03745 0.93518 0.85193 0.77960 0.76681 0.79372 1.21116 1.18979 1.18678 1.21192 0.94565 0.88227 1.55770 0.88879 1.19157 0.88426 0.86629 0.89510 0.93739 1.44991 1.17409 1.09136 1.65938 1.16287 0.84439 0.81140 0.78843 1.90885 1.22022 1.83719 1.54574 1.44879 1.16172 1.10010 1.67703 1.21115 0.97931 0.80971 0.98231 1.21614 0.96838 0.92817 1.03455 1.21973 0.93298 0.91842 0.99646 1.62217 1.08547 1.02288 1.53677 1.22907 0.92676 1.01021 0.94936 1.22792 0.95728 0.80839 1.02186 1.87959 1.52050 1.31397 1.61367 1.22786 0.85504 0.98035 0.95158 1.22839 0.99087 0.88859 1.00421 1.23368 0.80881 0.72322 0.87857 1.93373 1.69008 1.54539 1.96324 1.93061 1.81633 1.48430 1.97019 1.92981 1.74111 1.96154 1.55261 0.92179 0.75300 0.75172 0.92921 0.92911 0.90065 0.89677 0.89859 0.94533 0.94671 0.88166 0.91906 0.87127 0.91962 0.86969 0.88385 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.70 9.50 21.45 0.20 -48.49 16 2 C 0.01 0.68 5.20 84.66 0.44 1.12 16 3 Si 0.98 40.26 29.54 68.60 2.03 42.29 16 4 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.56 -28.19 8.46 25.60 0.22 -27.97 16 8 H 0.09 4.26 7.74 -2.91 -0.02 4.24 16 9 C 0.27 13.70 2.21 44.24 0.10 13.80 16 10 H 0.04 2.62 7.58 -2.39 -0.02 2.60 16 11 N -0.72 -29.15 4.99 -461.42 -2.30 -31.45 16 12 C 0.69 27.55 8.10 179.05 1.45 29.00 16 13 O -0.63 -31.25 14.92 -3.98 -0.06 -31.31 16 14 N -0.73 -19.81 5.56 -478.52 -2.66 -22.47 16 15 C 0.14 3.31 5.67 86.38 0.49 3.80 16 16 C -0.11 -1.64 5.26 30.60 0.16 -1.48 16 17 C 0.06 0.89 4.96 86.31 0.43 1.32 16 18 N -0.54 -7.81 4.73 -895.18 -4.23 -12.04 16 19 C 0.01 0.17 5.44 86.31 0.47 0.64 16 20 C 0.06 0.78 7.01 72.02 0.50 1.29 16 21 O -0.41 -6.83 10.83 -148.98 -1.61 -8.44 16 22 C 0.06 0.77 7.01 72.01 0.50 1.27 16 23 C 0.02 0.21 5.64 86.31 0.49 0.69 16 24 C 0.41 21.63 2.81 71.98 0.20 21.83 16 25 F -0.15 -8.62 12.91 44.97 0.58 -8.04 16 26 F -0.22 -11.59 15.67 44.97 0.70 -10.89 16 27 F -0.20 -10.00 16.94 44.97 0.76 -9.24 16 28 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.41 13.60 8.55 -92.70 -0.79 12.81 16 30 H 0.41 8.12 8.49 -92.71 -0.79 7.33 16 31 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.06 6.52 -2.39 -0.02 1.04 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.20 8.04 -2.38 -0.02 1.18 16 36 H 0.04 0.57 8.12 -2.39 -0.02 0.55 16 37 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 1.11 6.38 -2.39 -0.02 1.09 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.10 1.04 8.09 -2.39 -0.02 1.02 16 44 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -69.61 365.77 -1.67 -71.28 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.53 Total: 23.49 kcal Atomic # 6 Polarization: 39.85 SS G_CDS: 5.45 Total: 45.31 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -8.99 Total: -114.45 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.67 Total: -39.75 kcal Atomic # 9 Polarization: -30.21 SS G_CDS: 2.05 Total: -28.17 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -69.61 -1.67 -71.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932929679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.087 kcal (2) G-P(sol) polarization free energy of solvation -69.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds