Wall clock time and date at job start Sat Apr 11 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47134 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47426 * 120.00149 * 3 2 1 6 6 H 1.48506 * 109.47076 * 240.00309 * 3 2 1 7 7 C 1.38811 * 119.99726 * 180.27460 * 2 1 3 8 8 H 1.08003 * 119.99776 * 155.24693 * 7 2 1 9 9 N 1.36935 * 120.00188 * 335.24905 * 7 2 1 10 10 C 1.46934 * 120.64226 * 331.96408 * 9 7 2 11 11 C 1.52761 * 109.00240 * 233.66584 * 10 9 7 12 12 C 1.53001 * 109.41640 * 305.63724 * 11 10 9 13 13 C 1.52978 * 109.63471 * 61.08665 * 12 11 10 14 14 C 1.46930 * 120.64622 * 152.25131 * 9 7 2 15 15 C 1.53261 * 109.35470 * 181.02319 * 12 11 10 16 16 N 1.47148 * 108.40828 * 172.08748 * 15 12 11 17 17 C 1.34777 * 120.99326 * 129.53864 * 16 15 12 18 18 O 1.21289 * 119.99493 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00508 * 179.97438 * 17 16 15 20 20 H 1.09003 * 115.54916 * 34.32897 * 19 17 16 21 21 C 1.52995 * 117.50013 * 248.62270 * 19 17 16 22 22 C 1.52996 * 60.00209 * 252.51053 * 21 19 17 23 23 H 1.09002 * 117.50248 * 107.49002 * 22 21 19 24 24 N 1.46499 * 117.49794 * 252.51308 * 22 21 19 25 25 O 1.21799 * 120.00096 * 188.62148 * 24 22 21 26 26 O 1.21799 * 120.00243 * 8.61326 * 24 22 21 27 27 C 1.47165 * 118.02368 * 309.51988 * 16 15 12 28 28 C 1.53289 * 108.37082 * 50.59417 * 27 16 15 29 29 O 1.42894 * 109.54827 * 300.82287 * 12 11 10 30 30 H 0.96997 * 120.00207 * 174.23607 * 1 2 3 31 31 H 1.09000 * 109.58550 * 353.50207 * 10 9 7 32 32 H 1.09002 * 109.58392 * 113.92390 * 10 9 7 33 33 H 1.09000 * 109.55620 * 185.59444 * 11 10 9 34 34 H 1.08993 * 109.37511 * 65.56959 * 11 10 9 35 35 H 1.09002 * 109.49447 * 178.83295 * 13 12 11 36 36 H 1.09005 * 109.49436 * 58.76442 * 13 12 11 37 37 H 1.09008 * 109.58615 * 246.08607 * 14 9 7 38 38 H 1.09004 * 109.58869 * 6.36089 * 14 9 7 39 39 H 1.08995 * 109.67832 * 291.81720 * 15 12 11 40 40 H 1.08995 * 109.67490 * 52.36073 * 15 12 11 41 41 H 1.09001 * 117.49783 * 0.02562 * 21 19 17 42 42 H 1.09001 * 117.50306 * 145.01411 * 21 19 17 43 43 H 1.08998 * 109.67934 * 290.87329 * 27 16 15 44 44 H 1.08996 * 109.71691 * 170.33417 * 27 16 15 45 45 H 1.09002 * 109.50706 * 187.72265 * 28 27 16 46 46 H 1.09003 * 109.51042 * 67.58439 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1040 1.6963 -1.2126 7 6 2.0102 -1.2022 -0.0058 8 1 3.0158 -1.2433 -0.3976 9 7 1.4199 -2.3359 0.4853 10 6 0.3905 -2.2518 1.5305 11 6 0.7926 -3.1508 2.6982 12 6 1.0521 -4.5680 2.1831 13 6 2.1983 -4.5449 1.1702 14 6 1.8079 -3.6606 -0.0182 15 6 1.4306 -5.4746 3.3594 16 7 1.4886 -6.8632 2.8759 17 6 2.5603 -7.6411 3.1263 18 8 3.4962 -7.1987 3.7585 19 6 2.5960 -9.0603 2.6210 20 1 2.1084 -9.2299 1.6610 21 6 2.5224 -10.1819 3.6590 22 6 3.8404 -9.8921 2.9381 23 1 4.6333 -9.4128 3.5123 24 7 4.2851 -10.8558 1.9284 25 8 5.3966 -10.7570 1.4401 26 8 3.5436 -11.7560 1.5773 27 6 0.3413 -7.3775 2.1111 28 6 0.0185 -6.3787 0.9940 29 8 -0.1291 -5.0732 1.5576 30 1 -0.4850 -0.8358 -0.0844 31 1 0.3047 -1.2218 1.8767 32 1 -0.5663 -2.5853 1.1286 33 1 -0.0103 -3.1730 3.4349 34 1 1.6993 -2.7600 3.1599 35 1 2.3950 -5.5584 0.8203 36 1 3.0942 -4.1431 1.6437 37 1 0.9682 -4.1105 -0.5481 38 1 2.6558 -3.5601 -0.6957 39 1 2.4047 -5.1811 3.7504 40 1 0.6790 -5.3904 4.1442 41 1 2.4477 -9.8932 4.7075 42 1 1.9862 -11.0896 3.3822 43 1 -0.5209 -7.4834 2.7695 44 1 0.5928 -8.3452 1.6771 45 1 -0.9096 -6.6701 0.5023 46 1 0.8301 -6.3715 0.2664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949092396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:57 Heat of formation + Delta-G solvation = -42.148273 kcal Electronic energy + Delta-G solvation = -31075.889959 eV Core-core repulsion = 26777.152487 eV Total energy + Delta-G solvation = -4298.737472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.47898 -42.07977 -40.59903 -38.25977 -37.94023 -37.38118 -36.01657 -34.89433 -33.00747 -31.67209 -30.17186 -29.52047 -28.34959 -26.42971 -24.92586 -24.75852 -24.01710 -23.36357 -22.46588 -20.75225 -20.37481 -20.09363 -19.62815 -19.49605 -18.60803 -18.27850 -17.45912 -17.06435 -16.94419 -16.37478 -16.21259 -15.92149 -15.59075 -15.43668 -15.27455 -15.15220 -14.90722 -14.57092 -13.92990 -13.73772 -13.71242 -13.37937 -13.23678 -13.00229 -12.79822 -12.70662 -12.65846 -12.54394 -12.42094 -12.30447 -12.17380 -12.16375 -12.01042 -11.98482 -11.88672 -11.63483 -11.31275 -11.07157 -10.99274 -10.49773 -9.73575 -8.95841 -8.28057 -5.43407 -0.79490 0.38249 1.01091 1.52460 1.56465 1.63411 1.82862 2.02047 2.56392 2.61907 2.67255 2.93568 3.06006 3.18970 3.39388 3.44712 3.58949 3.64774 3.73995 3.85998 3.92138 4.12602 4.18512 4.22918 4.32156 4.42964 4.45367 4.52091 4.53035 4.55913 4.62489 4.74591 4.75360 4.80426 4.88780 4.97011 5.06996 5.11431 5.12173 5.15521 5.41134 5.79201 6.02565 6.20817 6.35902 6.36859 6.72071 7.03119 7.74950 8.19547 8.97050 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.002717 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.944674 B =10303.296549 C =10753.740929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.072 4.072 3 Si 1.114 2.886 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.361 4.361 8 H 0.046 0.954 9 N -0.616 5.616 10 C 0.167 3.833 11 C -0.114 4.114 12 C 0.126 3.874 13 C -0.139 4.139 14 C 0.154 3.846 15 C 0.100 3.900 16 N -0.597 5.597 17 C 0.544 3.456 18 O -0.570 6.570 19 C -0.145 4.145 20 H 0.168 0.832 21 C -0.067 4.067 22 C -0.081 4.081 23 H 0.177 0.823 24 N 0.016 4.984 25 O -0.217 6.217 26 O -0.130 6.130 27 C 0.073 3.927 28 C 0.031 3.969 29 O -0.378 6.378 30 H 0.255 0.745 31 H 0.044 0.956 32 H 0.009 0.991 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.151 0.849 42 H 0.168 0.832 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -23.695 9.577 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.269 4.269 3 Si 0.938 3.062 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.490 4.490 8 H 0.064 0.936 9 N -0.341 5.341 10 C 0.042 3.958 11 C -0.153 4.153 12 C 0.086 3.914 13 C -0.178 4.178 14 C 0.029 3.971 15 C -0.023 4.023 16 N -0.329 5.329 17 C 0.332 3.668 18 O -0.449 6.449 19 C -0.167 4.167 20 H 0.186 0.814 21 C -0.104 4.104 22 C -0.180 4.180 23 H 0.194 0.806 24 N 0.535 4.465 25 O -0.422 6.422 26 O -0.360 6.360 27 C -0.048 4.048 28 C -0.046 4.046 29 O -0.297 6.297 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.169 0.831 42 H 0.186 0.814 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.076 -21.143 10.462 23.614 hybrid contribution 0.801 -1.462 -0.832 1.863 sum -0.275 -22.605 9.630 24.572 Atomic orbital electron populations 1.70892 1.07438 1.29487 1.50226 1.27184 0.96609 1.04660 0.98410 0.82872 0.73880 0.72177 0.77250 1.21492 1.20563 1.20381 1.20201 0.97064 0.89701 1.42068 0.93645 1.44317 1.46318 1.01739 1.41723 1.20550 0.89916 0.97349 0.88009 1.21851 1.02219 0.92807 0.98463 1.21487 0.85298 0.93237 0.91377 1.22325 0.98126 0.99438 0.97895 1.20811 0.96668 0.85672 0.93971 1.22258 1.03765 0.80041 0.96259 1.48038 1.18346 1.12399 1.54129 1.19566 0.81523 0.86391 0.79351 1.90764 1.36725 1.74989 1.42468 1.22817 0.96878 0.91048 1.05958 0.81426 1.23994 0.88787 0.98315 0.99312 1.25103 0.98000 0.98234 0.96685 0.80632 1.44065 1.00281 1.01333 1.00837 1.94637 1.07900 1.80895 1.58719 1.94494 1.51674 1.26268 1.63551 1.22829 0.88841 0.98739 0.94391 1.23259 1.03993 0.82325 0.95053 1.88050 1.33825 1.32928 1.74935 0.93510 0.93761 0.97324 0.89614 0.91213 0.91117 0.92754 0.96459 0.94119 0.89551 0.88605 0.83066 0.81432 0.87603 0.85491 0.85260 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 12.42 21.65 0.27 -57.38 16 2 C -0.07 -4.14 4.69 84.86 0.40 -3.74 16 3 Si 1.11 51.48 29.98 68.60 2.06 53.54 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.36 -20.68 9.49 84.03 0.80 -19.88 16 8 H 0.05 2.63 7.94 -2.91 -0.02 2.61 16 9 N -0.62 -31.56 2.85 -699.88 -2.00 -33.55 16 10 C 0.17 7.93 4.43 86.22 0.38 8.31 16 11 C -0.11 -4.08 5.09 30.52 0.16 -3.92 16 12 C 0.13 3.81 0.68 -10.71 -0.01 3.80 16 13 C -0.14 -4.74 4.33 30.65 0.13 -4.61 16 14 C 0.15 6.63 6.29 86.36 0.54 7.17 16 15 C 0.10 2.37 5.29 86.34 0.46 2.82 16 16 N -0.60 -10.83 2.52 -817.43 -2.06 -12.90 16 17 C 0.54 10.28 7.50 87.66 0.66 10.94 16 18 O -0.57 -15.59 15.73 -3.06 -0.05 -15.64 16 19 C -0.15 -1.59 5.07 -11.54 -0.06 -1.65 16 20 H 0.17 1.16 6.55 -2.39 -0.02 1.15 16 21 C -0.07 -0.34 9.72 30.59 0.30 -0.05 16 22 C -0.08 -1.12 6.42 44.99 0.29 -0.83 16 23 H 0.18 2.82 7.67 -2.39 -0.02 2.81 16 24 N 0.02 0.30 4.33 -169.39 -0.73 -0.43 16 25 O -0.22 -5.56 19.24 18.89 0.36 -5.20 16 26 O -0.13 -2.35 18.28 18.89 0.35 -2.01 16 27 C 0.07 0.84 6.55 86.35 0.57 1.41 16 28 C 0.03 0.57 6.60 72.08 0.48 1.05 16 29 O -0.38 -10.93 9.01 -148.98 -1.34 -12.28 16 30 H 0.25 16.00 6.69 -92.71 -0.62 15.38 16 31 H 0.04 2.38 6.31 -2.39 -0.02 2.36 16 32 H 0.01 0.44 7.55 -2.39 -0.02 0.42 16 33 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.07 2.12 6.16 -2.39 -0.01 2.10 16 36 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.02 0.75 7.83 -2.38 -0.02 0.73 16 38 H 0.04 1.80 7.93 -2.39 -0.02 1.78 16 39 H 0.09 2.36 7.07 -2.39 -0.02 2.35 16 40 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.17 0.09 7.63 -2.39 -0.02 0.07 16 43 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.13 0.56 5.60 -2.39 -0.01 0.54 16 45 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.02 6.29 -2.39 -0.02 1.00 16 Total: -1.00 -78.29 366.03 3.09 -75.20 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.16 Total: 9.83 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.08 Total: 0.81 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -4.53 Total: -104.26 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.68 Total: -35.12 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.06 Total: 53.54 kcal Total: -78.29 3.09 -75.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949092396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.053 kcal (2) G-P(sol) polarization free energy of solvation -78.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds