Wall clock time and date at job start Sat Apr 11 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48502 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47278 * 300.00190 * 3 2 1 6 6 H 1.48501 * 109.47265 * 59.99767 * 3 2 1 7 7 C 1.38810 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00238 * 196.92199 * 7 2 1 9 9 N 1.36939 * 120.00227 * 16.92611 * 7 2 1 10 10 C 1.47156 * 120.99328 * 206.20954 * 9 7 2 11 11 C 1.53292 * 108.37036 * 230.57609 * 10 9 7 12 12 O 1.42965 * 109.23134 * 307.64507 * 11 10 9 13 13 C 1.42894 * 114.20908 * 62.49057 * 12 11 10 14 14 C 1.52981 * 109.56348 * 57.48214 * 13 12 11 15 15 C 1.53190 * 109.35616 * 59.05010 * 14 13 12 16 16 N 1.46940 * 108.77442 * 54.57241 * 15 14 13 17 17 C 1.34778 * 120.64538 * 126.29622 * 16 15 14 18 18 O 1.21284 * 119.99961 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99833 * 180.27515 * 17 16 15 20 20 H 1.09005 * 110.50324 * 38.43732 * 19 17 16 21 21 C 1.54087 * 110.56451 * 275.53828 * 19 17 16 22 22 O 1.45705 * 104.00985 * 241.42951 * 21 19 17 23 23 C 1.33775 * 109.47400 * 359.97438 * 22 21 19 24 24 O 1.21511 * 123.06954 * 180.02562 * 23 22 21 25 25 N 1.34008 * 113.85609 * 0.02562 * 23 22 21 26 26 C 1.46931 * 118.70904 * 306.57624 * 16 15 14 27 27 C 1.52762 * 109.00502 * 53.38473 * 26 16 15 28 28 C 1.47159 * 120.98770 * 26.18129 * 9 7 2 29 29 H 0.97001 * 119.99933 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.68589 * 110.84700 * 10 9 7 31 31 H 1.09003 * 109.70992 * 350.30681 * 10 9 7 32 32 H 1.09008 * 109.50657 * 187.71929 * 11 10 9 33 33 H 1.08991 * 109.51479 * 67.57767 * 11 10 9 34 34 H 1.09002 * 109.48862 * 299.08542 * 14 13 12 35 35 H 1.09001 * 109.49221 * 179.02152 * 14 13 12 36 36 H 1.08995 * 109.58800 * 294.78366 * 15 14 13 37 37 H 1.09002 * 109.70296 * 174.42640 * 15 14 13 38 38 H 1.09000 * 110.52375 * 0.05751 * 21 19 17 39 39 H 1.08997 * 110.52661 * 122.79794 * 21 19 17 40 40 H 0.96994 * 125.55658 * 180.02562 * 25 23 22 41 41 H 1.08994 * 109.58674 * 173.21995 * 26 16 15 42 42 H 1.09006 * 109.58561 * 293.64853 * 26 16 15 43 43 H 1.08996 * 109.55906 * 185.58996 * 27 26 16 44 44 H 1.08994 * 109.35156 * 65.56071 * 27 26 16 45 45 H 1.09008 * 109.67242 * 9.81470 * 28 9 7 46 46 H 1.08995 * 109.67586 * 249.27564 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2223 0.2728 9 7 1.3701 -2.3625 -0.3442 10 6 1.8343 -3.6636 0.1631 11 6 1.9825 -4.6205 -1.0253 12 8 0.7663 -4.6303 -1.7766 13 6 0.4225 -3.3681 -2.3516 14 6 1.5606 -2.8898 -3.2551 15 6 1.8038 -3.9260 -4.3569 16 7 0.5378 -4.1745 -5.0602 17 6 0.4615 -4.0549 -6.4005 18 8 1.4440 -3.7399 -7.0381 19 6 -0.8458 -4.3072 -7.1062 20 1 -1.6778 -3.9174 -6.5196 21 6 -1.0312 -5.8120 -7.3808 22 8 -1.1026 -5.8993 -8.8335 23 6 -0.9841 -4.6754 -9.3602 24 8 -1.0107 -4.4628 -10.5563 25 7 -0.8334 -3.7051 -8.4482 26 6 -0.6449 -4.5498 -4.2733 27 6 -0.8602 -3.5121 -3.1731 28 6 0.1970 -2.3456 -1.2326 29 1 -0.4850 0.8401 0.0004 30 1 1.1059 -4.0638 0.8683 31 1 2.7973 -3.5423 0.6592 32 1 2.1925 -5.6256 -0.6593 33 1 2.8012 -4.2859 -1.6622 34 1 2.4680 -2.7682 -2.6635 35 1 1.2899 -1.9354 -3.7067 36 1 2.1633 -4.8541 -3.9127 37 1 2.5446 -3.5468 -5.0609 38 1 -0.1778 -6.3768 -7.0056 39 1 -1.9563 -6.1716 -6.9305 40 1 -0.7332 -2.7599 -8.6416 41 1 -1.5206 -4.5800 -4.9215 42 1 -0.4877 -5.5295 -3.8219 43 1 -1.6742 -3.8328 -2.5231 44 1 -1.1119 -2.5530 -3.6255 45 1 0.0768 -1.3512 -1.6627 46 1 -0.6958 -2.6116 -0.6667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949355373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:04 Heat of formation + Delta-G solvation = -106.190290 kcal Electronic energy + Delta-G solvation = -31488.071333 eV Core-core repulsion = 27186.556791 eV Total energy + Delta-G solvation = -4301.514542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15603 -40.39428 -39.02674 -37.39167 -36.40723 -35.02228 -34.50806 -32.63930 -31.57629 -31.29651 -29.94419 -28.40200 -26.75487 -25.21880 -23.69399 -23.49086 -22.81810 -22.70369 -21.19602 -19.84221 -18.90025 -18.52014 -18.04682 -17.20935 -16.97120 -16.69454 -15.84298 -15.65671 -15.40627 -15.08225 -14.68617 -14.60620 -14.54625 -14.43962 -14.08978 -13.81209 -13.76694 -13.67399 -13.43413 -12.93855 -12.88417 -12.57022 -12.14929 -12.02138 -11.70756 -11.25537 -11.14967 -11.10068 -11.00877 -10.98801 -10.83548 -10.68970 -10.56410 -10.33421 -10.31771 -10.02226 -9.64304 -9.44269 -9.17261 -8.71899 -8.61165 -6.82661 -5.93866 -3.36720 2.08100 2.22589 2.42378 2.71232 3.19813 3.26791 3.36084 3.37101 3.63900 3.90035 4.17413 4.17964 4.35761 4.53996 4.69186 4.75017 4.92872 4.98438 5.13586 5.21434 5.27907 5.33260 5.38224 5.45707 5.60933 5.71321 5.77887 5.85082 5.96474 6.03228 6.05407 6.23739 6.29208 6.38090 6.40846 6.56530 6.64055 6.72478 6.86182 6.97453 7.15255 7.36589 7.63140 7.73424 7.80464 7.83917 8.24067 9.02526 9.65398 10.21938 11.13961 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.003063 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.103659 B = 9139.531976 C = 9872.515119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.593 5.593 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.382 6.382 13 C 0.095 3.905 14 C -0.146 4.146 15 C 0.116 3.884 16 N -0.596 5.596 17 C 0.502 3.498 18 O -0.526 6.526 19 C 0.073 3.927 20 H 0.130 0.870 21 C 0.056 3.944 22 O -0.323 6.323 23 C 0.652 3.348 24 O -0.519 6.519 25 N -0.710 5.710 26 C 0.106 3.894 27 C -0.118 4.118 28 C 0.158 3.842 29 H 0.254 0.746 30 H 0.025 0.975 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.441 0.559 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -11.304 -7.927 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.317 5.317 10 C -0.017 4.017 11 C -0.032 4.032 12 O -0.302 6.302 13 C 0.054 3.946 14 C -0.184 4.184 15 C -0.005 4.005 16 N -0.329 5.329 17 C 0.286 3.714 18 O -0.402 6.402 19 C -0.037 4.037 20 H 0.147 0.853 21 C -0.019 4.019 22 O -0.233 6.233 23 C 0.404 3.596 24 O -0.404 6.404 25 N -0.382 5.382 26 C -0.017 4.017 27 C -0.156 4.156 28 C 0.032 3.968 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.140 0.860 40 H 0.285 0.715 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.746 -11.437 -8.989 15.021 hybrid contribution 0.605 1.748 0.545 1.928 sum -3.141 -9.689 -8.444 13.230 Atomic orbital electron populations 1.70021 1.05230 1.25538 1.53906 1.25015 0.95320 0.98407 1.00763 0.86241 0.79416 0.83856 0.77392 1.20199 1.21488 1.21626 1.19210 0.92616 0.84441 1.41930 0.91395 1.44064 1.33630 1.01211 1.52745 1.21590 0.98543 0.87642 0.93944 1.23017 0.86773 0.99492 0.93879 1.87752 1.41868 1.31533 1.69015 1.22142 0.92645 0.86008 0.93795 1.22327 1.01641 0.98181 0.96288 1.21694 0.84733 0.99690 0.94428 1.48179 1.12389 1.67209 1.05127 1.20428 0.89801 0.78617 0.82543 1.90762 1.37228 1.46965 1.65241 1.22407 0.98843 0.95533 0.86904 0.85306 1.24253 1.06146 0.93442 0.78097 1.87296 1.86360 1.27962 1.21676 1.18404 0.75854 0.79478 0.85824 1.91092 1.55760 1.81740 1.11768 1.45682 1.77118 1.10942 1.04471 1.21801 0.86454 0.99955 0.93467 1.21774 0.97978 0.99451 0.96406 1.21364 0.89092 0.97578 0.88763 0.93574 0.95719 0.92116 0.90205 0.93521 0.88980 0.91074 0.91015 0.89463 0.87122 0.86048 0.71532 0.90441 0.89704 0.89627 0.90244 0.88878 0.95521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 11.14 55.49 0.62 -23.84 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 3 Si 0.90 20.60 29.59 -169.99 -5.03 15.58 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.41 9.65 -15.06 -0.15 -6.55 16 8 H 0.07 1.71 7.88 -52.48 -0.41 1.29 16 9 N -0.59 -13.45 2.55 -171.85 -0.44 -13.89 16 10 C 0.11 2.07 6.73 -3.53 -0.02 2.05 16 11 C 0.05 0.71 6.60 37.31 0.25 0.96 16 12 O -0.38 -5.99 9.01 -35.23 -0.32 -6.30 16 13 C 0.09 1.50 0.68 -90.50 -0.06 1.44 16 14 C -0.15 -2.26 4.33 -26.64 -0.12 -2.37 16 15 C 0.12 1.51 6.20 -3.70 -0.02 1.49 16 16 N -0.60 -6.47 2.98 -173.02 -0.52 -6.98 16 17 C 0.50 5.65 6.80 -10.99 -0.07 5.58 16 18 O -0.53 -8.16 16.01 5.55 0.09 -8.07 16 19 C 0.07 0.57 3.18 -68.20 -0.22 0.35 16 20 H 0.13 0.60 6.50 -51.93 -0.34 0.26 16 21 C 0.06 0.37 7.79 37.73 0.29 0.66 16 22 O -0.32 -3.55 11.09 -37.84 -0.42 -3.97 16 23 C 0.65 8.36 9.16 53.71 0.49 8.85 16 24 O -0.52 -8.65 18.04 -19.12 -0.34 -9.00 16 25 N -0.71 -7.04 5.66 -59.36 -0.34 -7.38 16 26 C 0.11 0.92 6.06 -3.93 -0.02 0.89 16 27 C -0.12 -1.40 5.09 -26.85 -0.14 -1.54 16 28 C 0.16 3.33 4.10 -3.55 -0.01 3.31 16 29 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 32 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 33 H 0.05 0.71 6.29 -51.93 -0.33 0.38 16 34 H 0.09 1.61 6.16 -51.93 -0.32 1.29 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.91 7.83 -51.93 -0.41 0.50 16 37 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 38 H 0.11 0.67 7.72 -51.93 -0.40 0.27 16 39 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.44 3.94 8.96 -40.82 -0.37 3.57 16 41 H 0.08 0.38 5.45 -51.93 -0.28 0.10 16 42 H 0.08 0.73 7.83 -51.93 -0.41 0.33 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 2.22 6.13 -51.92 -0.32 1.90 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -33.66 359.72 -7.61 -41.27 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.45 Total: 2.04 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 0.11 Total: 15.11 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.67 Total: -52.09 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.99 Total: -27.34 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.66 -7.61 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949355373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.916 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds