Wall clock time and date at job start Sat Apr 11 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48502 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47278 * 300.00190 * 3 2 1 6 6 H 1.48501 * 109.47265 * 59.99767 * 3 2 1 7 7 C 1.38810 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00238 * 196.92199 * 7 2 1 9 9 N 1.36939 * 120.00227 * 16.92611 * 7 2 1 10 10 C 1.47156 * 120.99328 * 206.20954 * 9 7 2 11 11 C 1.53292 * 108.37036 * 230.57609 * 10 9 7 12 12 O 1.42965 * 109.23134 * 307.64507 * 11 10 9 13 13 C 1.42894 * 114.20908 * 62.49057 * 12 11 10 14 14 C 1.52981 * 109.56348 * 57.48214 * 13 12 11 15 15 C 1.53190 * 109.35616 * 59.05010 * 14 13 12 16 16 N 1.46940 * 108.77442 * 54.57241 * 15 14 13 17 17 C 1.34778 * 120.64538 * 126.29622 * 16 15 14 18 18 O 1.21284 * 119.99961 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99833 * 180.27515 * 17 16 15 20 20 H 1.09005 * 110.50324 * 38.43732 * 19 17 16 21 21 C 1.54087 * 110.56451 * 275.53828 * 19 17 16 22 22 O 1.45705 * 104.00985 * 241.42951 * 21 19 17 23 23 C 1.33775 * 109.47400 * 359.97438 * 22 21 19 24 24 O 1.21511 * 123.06954 * 180.02562 * 23 22 21 25 25 N 1.34008 * 113.85609 * 0.02562 * 23 22 21 26 26 C 1.46931 * 118.70904 * 306.57624 * 16 15 14 27 27 C 1.52762 * 109.00502 * 53.38473 * 26 16 15 28 28 C 1.47159 * 120.98770 * 26.18129 * 9 7 2 29 29 H 0.97001 * 119.99933 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.68589 * 110.84700 * 10 9 7 31 31 H 1.09003 * 109.70992 * 350.30681 * 10 9 7 32 32 H 1.09008 * 109.50657 * 187.71929 * 11 10 9 33 33 H 1.08991 * 109.51479 * 67.57767 * 11 10 9 34 34 H 1.09002 * 109.48862 * 299.08542 * 14 13 12 35 35 H 1.09001 * 109.49221 * 179.02152 * 14 13 12 36 36 H 1.08995 * 109.58800 * 294.78366 * 15 14 13 37 37 H 1.09002 * 109.70296 * 174.42640 * 15 14 13 38 38 H 1.09000 * 110.52375 * 0.05751 * 21 19 17 39 39 H 1.08997 * 110.52661 * 122.79794 * 21 19 17 40 40 H 0.96994 * 125.55658 * 180.02562 * 25 23 22 41 41 H 1.08994 * 109.58674 * 173.21995 * 26 16 15 42 42 H 1.09006 * 109.58561 * 293.64853 * 26 16 15 43 43 H 1.08996 * 109.55906 * 185.58996 * 27 26 16 44 44 H 1.08994 * 109.35156 * 65.56071 * 27 26 16 45 45 H 1.09008 * 109.67242 * 9.81470 * 28 9 7 46 46 H 1.08995 * 109.67586 * 249.27564 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2223 0.2728 9 7 1.3701 -2.3625 -0.3442 10 6 1.8343 -3.6636 0.1631 11 6 1.9825 -4.6205 -1.0253 12 8 0.7663 -4.6303 -1.7766 13 6 0.4225 -3.3681 -2.3516 14 6 1.5606 -2.8898 -3.2551 15 6 1.8038 -3.9260 -4.3569 16 7 0.5378 -4.1745 -5.0602 17 6 0.4615 -4.0549 -6.4005 18 8 1.4440 -3.7399 -7.0381 19 6 -0.8458 -4.3072 -7.1062 20 1 -1.6778 -3.9174 -6.5196 21 6 -1.0312 -5.8120 -7.3808 22 8 -1.1026 -5.8993 -8.8335 23 6 -0.9841 -4.6754 -9.3602 24 8 -1.0107 -4.4628 -10.5563 25 7 -0.8334 -3.7051 -8.4482 26 6 -0.6449 -4.5498 -4.2733 27 6 -0.8602 -3.5121 -3.1731 28 6 0.1970 -2.3456 -1.2326 29 1 -0.4850 0.8401 0.0004 30 1 1.1059 -4.0638 0.8683 31 1 2.7973 -3.5423 0.6592 32 1 2.1925 -5.6256 -0.6593 33 1 2.8012 -4.2859 -1.6622 34 1 2.4680 -2.7682 -2.6635 35 1 1.2899 -1.9354 -3.7067 36 1 2.1633 -4.8541 -3.9127 37 1 2.5446 -3.5468 -5.0609 38 1 -0.1778 -6.3768 -7.0056 39 1 -1.9563 -6.1716 -6.9305 40 1 -0.7332 -2.7599 -8.6416 41 1 -1.5206 -4.5800 -4.9215 42 1 -0.4877 -5.5295 -3.8219 43 1 -1.6742 -3.8328 -2.5231 44 1 -1.1119 -2.5530 -3.6255 45 1 0.0768 -1.3512 -1.6627 46 1 -0.6958 -2.6116 -0.6667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949355373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:04 Heat of formation + Delta-G solvation = -132.705898 kcal Electronic energy + Delta-G solvation = -31489.221136 eV Core-core repulsion = 27186.556791 eV Total energy + Delta-G solvation = -4302.664345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.95184 -41.48282 -40.19047 -38.37051 -37.53708 -36.15805 -35.81699 -33.82254 -33.18380 -32.51149 -30.75145 -29.72447 -28.31835 -26.14070 -25.07107 -24.71579 -23.96886 -23.54868 -22.48162 -20.95459 -20.07153 -19.29834 -18.94891 -18.76995 -18.03972 -17.61202 -17.18579 -16.77357 -16.50034 -16.21637 -16.06917 -15.82963 -15.59185 -15.35147 -15.27866 -15.25588 -14.88795 -14.65680 -14.56341 -14.37417 -13.84435 -13.52725 -13.41003 -13.20177 -13.07509 -12.81382 -12.70574 -12.37963 -12.28497 -12.16818 -12.09216 -12.03028 -11.93342 -11.69493 -11.65370 -11.49022 -10.97300 -10.70875 -10.44389 -10.30206 -9.71665 -8.67702 -7.90044 -5.35031 1.22986 1.39313 1.41664 1.45741 1.53851 1.61009 1.87347 2.45978 2.53022 2.92938 3.03910 3.17265 3.24032 3.55007 3.69808 3.80240 3.95048 4.00320 4.03213 4.16160 4.32828 4.36255 4.40681 4.44686 4.48225 4.57794 4.62747 4.71027 4.79513 4.84126 4.94491 5.00369 5.03688 5.11819 5.18762 5.30397 5.38906 5.48818 5.58683 5.61894 5.65903 6.06347 6.30249 6.31116 6.46783 6.85506 6.97330 7.09720 7.79195 8.31182 9.14512 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.003063 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.103659 B = 9139.531976 C = 9872.515119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.046 4.046 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.103 3.897 11 C 0.054 3.946 12 O -0.374 6.374 13 C 0.105 3.895 14 C -0.136 4.136 15 C 0.127 3.873 16 N -0.592 5.592 17 C 0.502 3.498 18 O -0.575 6.575 19 C 0.078 3.922 20 H 0.175 0.825 21 C 0.052 3.948 22 O -0.336 6.336 23 C 0.650 3.350 24 O -0.571 6.571 25 N -0.703 5.703 26 C 0.109 3.891 27 C -0.118 4.118 28 C 0.165 3.835 29 H 0.250 0.750 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.174 0.826 40 H 0.443 0.557 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.059 0.941 46 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 -13.504 -8.172 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.336 5.336 10 C -0.023 4.023 11 C -0.024 4.024 12 O -0.293 6.293 13 C 0.064 3.936 14 C -0.175 4.175 15 C 0.005 3.995 16 N -0.324 5.324 17 C 0.288 3.712 18 O -0.454 6.454 19 C -0.031 4.031 20 H 0.192 0.808 21 C -0.022 4.022 22 O -0.245 6.245 23 C 0.403 3.597 24 O -0.459 6.459 25 N -0.375 5.375 26 C -0.012 4.012 27 C -0.156 4.156 28 C 0.039 3.961 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.191 0.809 40 H 0.287 0.713 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -4.651 -13.679 -9.183 17.119 hybrid contribution 0.944 2.411 0.795 2.709 sum -3.707 -11.267 -8.387 14.527 Atomic orbital electron populations 1.70156 1.06345 1.25654 1.55582 1.25643 0.95999 1.00993 1.01519 0.85349 0.78731 0.80516 0.76734 1.19324 1.21819 1.22070 1.19477 0.92739 0.85739 1.40693 0.91610 1.44336 1.33799 1.01886 1.53554 1.21789 0.98154 0.86751 0.95573 1.23010 0.86807 1.00274 0.92264 1.87769 1.42011 1.30779 1.68770 1.21954 0.94842 0.84570 0.92237 1.22150 1.00354 0.98254 0.96696 1.21412 0.85859 0.98994 0.93264 1.48201 1.12248 1.66714 1.05275 1.21045 0.90516 0.77288 0.82317 1.90756 1.39320 1.49097 1.66219 1.22714 0.97790 0.96777 0.85777 0.80826 1.24794 1.09269 0.92339 0.75760 1.87267 1.85983 1.26922 1.24352 1.18528 0.75400 0.80235 0.85513 1.91043 1.58089 1.82717 1.14063 1.45714 1.75847 1.10792 1.05120 1.22026 0.87195 0.98897 0.93046 1.21807 0.95777 1.00883 0.97175 1.21212 0.87581 0.97570 0.89692 0.94117 0.96632 0.91852 0.86562 0.93175 0.91407 0.93020 0.89925 0.90886 0.86470 0.80860 0.71256 0.85362 0.88303 0.88721 0.90446 0.92273 0.98440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.19 11.14 21.65 0.24 -51.95 16 2 C -0.05 -2.44 4.95 84.86 0.42 -2.02 16 3 Si 0.96 43.33 29.59 68.60 2.03 45.36 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.26 -13.30 9.65 84.03 0.81 -12.49 16 8 H 0.07 3.36 7.88 -2.91 -0.02 3.34 16 9 N -0.61 -28.29 2.55 -697.60 -1.78 -30.07 16 10 C 0.10 3.85 6.73 86.35 0.58 4.44 16 11 C 0.05 1.55 6.60 72.08 0.48 2.02 16 12 O -0.37 -10.76 9.01 -148.98 -1.34 -12.10 16 13 C 0.10 3.19 0.68 -10.72 -0.01 3.19 16 14 C -0.14 -4.16 4.33 30.65 0.13 -4.03 16 15 C 0.13 3.10 6.20 86.36 0.54 3.63 16 16 N -0.59 -10.88 2.98 -819.70 -2.44 -13.32 16 17 C 0.50 9.82 6.80 87.66 0.60 10.42 16 18 O -0.57 -17.18 16.01 -3.04 -0.05 -17.23 16 19 C 0.08 0.88 3.18 44.50 0.14 1.02 16 20 H 0.17 0.45 6.50 -2.38 -0.02 0.44 16 21 C 0.05 0.42 7.79 72.35 0.56 0.98 16 22 O -0.34 -6.47 11.09 -47.35 -0.53 -6.99 16 23 C 0.65 15.79 9.16 129.91 1.19 16.98 16 24 O -0.57 -19.15 18.04 19.65 0.35 -18.79 16 25 N -0.70 -12.42 5.66 -573.42 -3.24 -15.66 16 26 C 0.11 1.34 6.06 86.22 0.52 1.87 16 27 C -0.12 -2.48 5.09 30.51 0.16 -2.33 16 28 C 0.17 7.12 4.10 86.34 0.35 7.47 16 29 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.02 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.06 2.29 7.96 -2.39 -0.02 2.27 16 32 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.05 1.43 6.29 -2.39 -0.02 1.41 16 34 H 0.07 2.39 6.16 -2.39 -0.01 2.38 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.86 7.83 -2.39 -0.02 1.84 16 37 H 0.07 2.02 7.00 -2.39 -0.02 2.01 16 38 H 0.12 0.85 7.72 -2.39 -0.02 0.83 16 39 H 0.17 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.44 7.31 8.96 -92.71 -0.83 6.48 16 41 H 0.13 0.32 5.45 -2.39 -0.01 0.31 16 42 H 0.10 1.09 7.83 -2.38 -0.02 1.07 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 2.94 6.13 -2.38 -0.01 2.93 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -79.61 359.72 -0.09 -79.70 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.20 Total: 9.90 kcal Atomic # 6 Polarization: 24.68 SS G_CDS: 6.47 Total: 31.15 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -7.22 Total: -110.99 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -1.56 Total: -55.12 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -79.61 -0.09 -79.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949355373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.007 kcal (2) G-P(sol) polarization free energy of solvation -79.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds