Wall clock time and date at job start Sat Apr 11 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38356 * 119.45915 * 2 1 4 4 C 1.38357 * 119.30291 * 179.97438 * 3 2 1 5 5 C 1.40026 * 118.28975 * 0.02562 * 4 3 2 6 6 C 1.47841 * 120.55880 * 180.02562 * 5 4 3 7 7 O 1.21550 * 119.99719 * 359.97430 * 6 5 4 8 8 N 1.34772 * 119.99869 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00098 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47247 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.49882 * 54.99753 * 10 9 8 12 12 C 1.53195 * 109.49645 * 294.92944 * 10 9 8 13 13 N 1.46938 * 108.77071 * 185.44741 * 12 10 9 14 14 C 1.36940 * 120.60087 * 233.53665 * 13 12 10 15 15 H 1.08000 * 119.99643 * 152.77585 * 14 13 12 16 16 C 1.38815 * 120.00095 * 332.77012 * 14 13 12 17 17 N 1.31622 * 119.99411 * 159.74295 * 16 14 13 18 18 Si 1.86795 * 120.00249 * 339.74162 * 16 14 13 19 19 H 1.48497 * 109.47339 * 94.89791 * 18 16 14 20 20 H 1.48492 * 109.47307 * 214.90230 * 18 16 14 21 21 H 1.48504 * 109.46815 * 334.90088 * 18 16 14 22 22 C 1.46919 * 118.76546 * 53.55864 * 13 12 10 23 23 C 1.53190 * 108.77640 * 306.41347 * 22 13 12 24 24 C 1.53043 * 109.31559 * 54.63451 * 23 22 13 25 25 F 1.39893 * 109.46070 * 178.61757 * 24 23 22 26 26 F 1.39901 * 109.44655 * 58.64530 * 24 23 22 27 27 C 1.39515 * 118.87984 * 359.97438 * 5 4 3 28 28 N 1.31699 * 120.56947 * 0.27756 * 27 5 4 29 29 H 1.08999 * 109.47109 * 90.00522 * 1 2 3 30 30 H 1.09001 * 109.47124 * 210.00224 * 1 2 3 31 31 H 1.09003 * 109.47697 * 330.00305 * 1 2 3 32 32 H 1.07996 * 120.34683 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.85592 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00153 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.47083 * 299.99793 * 9 8 6 36 36 H 1.09001 * 109.47397 * 59.99656 * 9 8 6 37 37 H 1.08993 * 109.59033 * 305.20743 * 12 10 9 38 38 H 1.09005 * 109.58130 * 65.63033 * 12 10 9 39 39 H 0.97000 * 119.99291 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.58930 * 186.62298 * 22 13 12 41 41 H 1.09000 * 109.58700 * 66.20084 * 22 13 12 42 42 H 1.09003 * 109.49600 * 294.68247 * 23 22 13 43 43 H 1.09007 * 109.52426 * 174.60255 * 23 22 13 44 44 H 1.08008 * 119.71805 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2009 0.0005 5 6 4.2312 -0.0339 0.0005 6 6 5.7083 -0.0965 0.0016 7 8 6.3600 0.9295 0.0021 8 7 6.3321 -1.2911 0.0021 9 6 7.7958 -1.3532 0.0027 10 6 8.2443 -2.8160 0.0038 11 1 7.7877 -3.3371 -0.8376 12 6 7.8117 -3.4823 1.3137 13 7 8.3618 -4.8442 1.3555 14 6 7.5437 -5.9200 1.5761 15 1 7.8136 -6.8918 1.1898 16 6 6.3676 -5.7615 2.2962 17 7 5.4014 -6.6479 2.1817 18 14 6.1562 -4.2903 3.4276 19 1 5.4443 -3.2069 2.7032 20 1 5.3659 -4.6916 4.6190 21 1 7.4906 -3.8028 3.8601 22 6 9.8056 -5.0300 1.1567 23 6 10.2151 -4.3464 -0.1517 24 6 9.7682 -2.8831 -0.1197 25 9 10.1685 -2.2476 -1.3000 26 9 10.3535 -2.2411 0.9770 27 6 3.4716 -1.2042 0.0005 28 7 2.1558 -1.1486 -0.0050 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6442 2.1381 -0.0004 33 1 4.1274 2.1266 0.0010 34 1 5.8120 -2.1099 0.0021 35 1 8.1809 -0.8554 -0.8873 36 1 8.1803 -0.8550 0.8927 37 1 8.1925 -2.9088 2.1586 38 1 6.7235 -3.5256 1.3595 39 1 4.5797 -6.5374 2.6852 40 1 10.0326 -6.0945 1.0994 41 1 10.3495 -4.5826 1.9886 42 1 9.7400 -4.8537 -0.9914 43 1 11.2984 -4.3937 -0.2638 44 1 3.9669 -2.1640 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046915589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:36 Heat of formation + Delta-G solvation = -78.974110 kcal Electronic energy + Delta-G solvation = -30326.428814 eV Core-core repulsion = 25915.006938 eV Total energy + Delta-G solvation = -4411.421876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.74388 -46.69435 -40.78884 -39.24286 -37.71261 -35.14578 -33.40753 -32.80258 -32.55492 -31.37392 -30.59438 -28.40214 -25.93219 -25.22677 -24.02246 -23.31486 -22.54973 -21.38052 -20.69420 -19.91290 -18.26917 -17.20545 -17.15190 -17.09457 -16.26160 -16.03231 -15.85730 -15.43648 -15.20104 -15.13450 -14.84496 -14.65423 -14.36123 -13.84909 -13.57336 -13.41081 -13.33581 -13.18702 -13.09378 -12.94933 -12.61192 -12.55584 -12.52493 -12.30628 -12.14056 -11.98539 -11.79717 -11.74783 -11.06592 -10.79370 -10.42649 -10.33148 -10.21135 -10.11820 -9.96776 -9.63941 -9.56909 -9.29781 -9.03612 -8.85177 -7.25357 -6.11928 -3.51482 0.44635 1.01523 2.74483 2.98776 3.14835 3.37951 3.39837 3.65692 3.95452 4.00990 4.32792 4.35458 4.40689 4.45097 4.60499 4.64427 4.67870 4.74677 4.80797 5.06884 5.11077 5.22295 5.24398 5.27439 5.31852 5.38472 5.48775 5.66091 5.71299 5.75399 5.81095 5.84661 5.87569 5.91386 6.06489 6.15295 6.26039 6.31741 6.35788 6.39761 6.59306 7.38602 7.69007 7.71949 8.08850 8.14364 8.71259 9.51220 9.84961 11.02987 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.004261 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.398596 B = 6569.253787 C = 8471.097097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.148 3.852 3 C -0.183 4.183 4 C -0.013 4.013 5 C -0.195 4.195 6 C 0.566 3.434 7 O -0.538 6.538 8 N -0.718 5.718 9 C 0.124 3.876 10 C -0.159 4.159 11 H 0.110 0.890 12 C 0.134 3.866 13 N -0.604 5.604 14 C -0.268 4.268 15 H 0.091 0.909 16 C 0.030 3.970 17 N -0.899 5.899 18 Si 0.872 3.128 19 H -0.288 1.288 20 H -0.299 1.299 21 H -0.268 1.268 22 C 0.147 3.853 23 C -0.172 4.172 24 C 0.302 3.698 25 F -0.208 7.208 26 F -0.199 7.199 27 C 0.146 3.854 28 N -0.484 5.484 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.265 0.735 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 12.432 -6.106 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.011 3.989 3 C -0.203 4.203 4 C -0.039 4.039 5 C -0.200 4.200 6 C 0.352 3.648 7 O -0.416 6.416 8 N -0.370 5.370 9 C 0.000 4.000 10 C -0.181 4.181 11 H 0.128 0.872 12 C 0.007 3.993 13 N -0.326 5.326 14 C -0.396 4.396 15 H 0.109 0.891 16 C -0.170 4.170 17 N -0.541 5.541 18 Si 0.702 3.298 19 H -0.216 1.216 20 H -0.227 1.227 21 H -0.193 1.193 22 C 0.021 3.979 23 C -0.212 4.212 24 C 0.266 3.734 25 F -0.189 7.189 26 F -0.180 7.180 27 C -0.013 4.013 28 N -0.193 5.193 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.241 0.759 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.082 12.300 -6.036 14.044 hybrid contribution 0.183 1.277 0.670 1.454 sum -2.899 13.577 -5.366 14.884 Atomic orbital electron populations 1.20795 0.88404 1.03894 1.03426 1.21608 0.97450 0.88336 0.91548 1.21959 0.94452 0.99549 1.04328 1.21706 0.94030 0.97829 0.90365 1.20976 0.94351 0.95710 1.08951 1.17980 0.86779 0.83614 0.76432 1.90764 1.66935 1.33780 1.50110 1.45894 1.07849 1.08504 1.74772 1.21371 0.79385 0.95839 1.03413 1.23048 0.93169 0.96636 1.05199 0.87175 1.21464 0.99205 0.86384 0.92231 1.44394 1.02435 1.02138 1.83656 1.18924 1.01355 0.89624 1.29707 0.89107 1.25266 0.96487 0.96992 0.98299 1.69812 1.05216 1.36769 1.42305 0.87132 0.78040 0.82625 0.81989 1.21556 1.22702 1.19255 1.20946 0.85054 0.99643 0.92257 1.23064 1.02379 0.91804 1.03934 1.20931 0.91604 0.89779 0.71131 1.92975 1.92355 1.84615 1.48946 1.92974 1.86131 1.84004 1.54883 1.23086 0.89466 0.97727 0.91016 1.67592 1.09494 1.29051 1.13197 0.89941 0.89986 0.90425 0.84044 0.83450 0.75859 0.90369 0.90458 0.94093 0.90033 0.92454 0.90209 0.94571 0.88702 0.89861 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.16 36.00 0.37 -0.47 16 2 C 0.15 1.66 6.78 -82.51 -0.56 1.10 16 3 C -0.18 -1.82 9.72 -39.49 -0.38 -2.20 16 4 C -0.01 -0.15 9.72 -38.87 -0.38 -0.53 16 5 C -0.19 -2.70 5.89 -104.82 -0.62 -3.32 16 6 C 0.57 8.89 7.78 -12.33 -0.10 8.80 16 7 O -0.54 -9.75 16.42 5.32 0.09 -9.67 16 8 N -0.72 -10.89 5.28 -61.25 -0.32 -11.21 16 9 C 0.12 1.94 4.83 -4.04 -0.02 1.92 16 10 C -0.16 -2.60 2.03 -90.50 -0.18 -2.78 16 11 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 12 C 0.13 2.65 3.07 -3.70 -0.01 2.64 16 13 N -0.60 -12.99 2.77 -172.32 -0.48 -13.47 16 14 C -0.27 -6.85 10.04 -15.06 -0.15 -7.00 16 15 H 0.09 2.47 8.05 -52.49 -0.42 2.05 16 16 C 0.03 0.79 5.24 -17.43 -0.09 0.70 16 17 N -0.90 -25.76 13.97 55.49 0.78 -24.98 16 18 Si 0.87 20.99 24.35 -169.99 -4.14 16.85 16 19 H -0.29 -6.49 6.70 56.52 0.38 -6.11 16 20 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.27 -6.46 6.46 56.52 0.36 -6.09 16 22 C 0.15 2.61 6.31 -3.72 -0.02 2.59 16 23 C -0.17 -2.57 5.62 -26.61 -0.15 -2.72 16 24 C 0.30 4.83 1.63 -26.68 -0.04 4.79 16 25 F -0.21 -3.26 16.41 2.25 0.04 -3.23 16 26 F -0.20 -3.42 15.73 2.25 0.04 -3.39 16 27 C 0.15 2.04 10.71 -17.13 -0.18 1.85 16 28 N -0.48 -6.76 10.25 -9.14 -0.09 -6.85 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.42 8.07 -51.93 -0.42 0.01 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.15 1.59 7.74 -52.48 -0.41 1.19 16 34 H 0.40 5.79 5.77 -40.82 -0.24 5.56 16 35 H 0.08 1.20 7.63 -51.93 -0.40 0.80 16 36 H 0.08 1.29 7.97 -51.93 -0.41 0.87 16 37 H 0.04 0.86 6.76 -51.93 -0.35 0.50 16 38 H 0.08 1.71 3.71 -51.93 -0.19 1.52 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.08 1.36 7.93 -51.93 -0.41 0.95 16 41 H 0.04 0.65 7.92 -51.93 -0.41 0.23 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 44 H 0.16 2.12 6.42 -52.48 -0.34 1.78 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -31.36 360.04 -6.93 -38.29 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.73 Total: 6.88 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -2.53 Total: 5.36 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.12 Total: -56.52 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.07 Total: -6.62 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.14 Total: 16.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.36 -6.93 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046915589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.687 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds