Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38356 * 119.45915 * 2 1 4 4 C 1.38357 * 119.30291 * 179.97438 * 3 2 1 5 5 C 1.40026 * 118.28975 * 0.02562 * 4 3 2 6 6 C 1.47841 * 120.55880 * 180.02562 * 5 4 3 7 7 O 1.21550 * 119.99719 * 359.97430 * 6 5 4 8 8 N 1.34772 * 119.99869 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00098 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47247 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.49882 * 54.99753 * 10 9 8 12 12 C 1.53195 * 109.49645 * 294.92944 * 10 9 8 13 13 N 1.46938 * 108.77071 * 185.44741 * 12 10 9 14 14 C 1.36940 * 120.60087 * 233.53665 * 13 12 10 15 15 H 1.08000 * 119.99643 * 152.77585 * 14 13 12 16 16 C 1.38815 * 120.00095 * 332.77012 * 14 13 12 17 17 N 1.31622 * 119.99411 * 159.74295 * 16 14 13 18 18 Si 1.86795 * 120.00249 * 339.74162 * 16 14 13 19 19 H 1.48497 * 109.47339 * 94.89791 * 18 16 14 20 20 H 1.48492 * 109.47307 * 214.90230 * 18 16 14 21 21 H 1.48504 * 109.46815 * 334.90088 * 18 16 14 22 22 C 1.46919 * 118.76546 * 53.55864 * 13 12 10 23 23 C 1.53190 * 108.77640 * 306.41347 * 22 13 12 24 24 C 1.53043 * 109.31559 * 54.63451 * 23 22 13 25 25 F 1.39893 * 109.46070 * 178.61757 * 24 23 22 26 26 F 1.39901 * 109.44655 * 58.64530 * 24 23 22 27 27 C 1.39515 * 118.87984 * 359.97438 * 5 4 3 28 28 N 1.31699 * 120.56947 * 0.27756 * 27 5 4 29 29 H 1.08999 * 109.47109 * 90.00522 * 1 2 3 30 30 H 1.09001 * 109.47124 * 210.00224 * 1 2 3 31 31 H 1.09003 * 109.47697 * 330.00305 * 1 2 3 32 32 H 1.07996 * 120.34683 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.85592 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00153 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.47083 * 299.99793 * 9 8 6 36 36 H 1.09001 * 109.47397 * 59.99656 * 9 8 6 37 37 H 1.08993 * 109.59033 * 305.20743 * 12 10 9 38 38 H 1.09005 * 109.58130 * 65.63033 * 12 10 9 39 39 H 0.97000 * 119.99291 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.58930 * 186.62298 * 22 13 12 41 41 H 1.09000 * 109.58700 * 66.20084 * 22 13 12 42 42 H 1.09003 * 109.49600 * 294.68247 * 23 22 13 43 43 H 1.09007 * 109.52426 * 174.60255 * 23 22 13 44 44 H 1.08008 * 119.71805 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2009 0.0005 5 6 4.2312 -0.0339 0.0005 6 6 5.7083 -0.0965 0.0016 7 8 6.3600 0.9295 0.0021 8 7 6.3321 -1.2911 0.0021 9 6 7.7958 -1.3532 0.0027 10 6 8.2443 -2.8160 0.0038 11 1 7.7877 -3.3371 -0.8376 12 6 7.8117 -3.4823 1.3137 13 7 8.3618 -4.8442 1.3555 14 6 7.5437 -5.9200 1.5761 15 1 7.8136 -6.8918 1.1898 16 6 6.3676 -5.7615 2.2962 17 7 5.4014 -6.6479 2.1817 18 14 6.1562 -4.2903 3.4276 19 1 5.4443 -3.2069 2.7032 20 1 5.3659 -4.6916 4.6190 21 1 7.4906 -3.8028 3.8601 22 6 9.8056 -5.0300 1.1567 23 6 10.2151 -4.3464 -0.1517 24 6 9.7682 -2.8831 -0.1197 25 9 10.1685 -2.2476 -1.3000 26 9 10.3535 -2.2411 0.9770 27 6 3.4716 -1.2042 0.0005 28 7 2.1558 -1.1486 -0.0050 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6442 2.1381 -0.0004 33 1 4.1274 2.1266 0.0010 34 1 5.8120 -2.1099 0.0021 35 1 8.1809 -0.8554 -0.8873 36 1 8.1803 -0.8550 0.8927 37 1 8.1925 -2.9088 2.1586 38 1 6.7235 -3.5256 1.3595 39 1 4.5797 -6.5374 2.6852 40 1 10.0326 -6.0945 1.0994 41 1 10.3495 -4.5826 1.9886 42 1 9.7400 -4.8537 -0.9914 43 1 11.2984 -4.3937 -0.2638 44 1 3.9669 -2.1640 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046915589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = -99.488605 kcal Electronic energy + Delta-G solvation = -30327.318389 eV Core-core repulsion = 25915.006938 eV Total energy + Delta-G solvation = -4412.311451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.04521 -47.99549 -41.81653 -40.39837 -39.21555 -36.51994 -34.66774 -34.24394 -33.50591 -32.68359 -32.26911 -29.31166 -27.29960 -26.90160 -25.02579 -24.60432 -23.73300 -22.77775 -21.87474 -21.33344 -19.47680 -18.95431 -18.47704 -18.19828 -17.46204 -17.36186 -16.93285 -16.86095 -16.69604 -16.36537 -16.09121 -15.87552 -15.47364 -15.22042 -15.00118 -14.73636 -14.51553 -14.45850 -14.31886 -14.25459 -14.22590 -13.65865 -13.49418 -13.39701 -13.31923 -13.22582 -13.15984 -13.03304 -12.64734 -12.33793 -12.18714 -11.86006 -11.68358 -11.57133 -11.27748 -11.05972 -10.81583 -10.57497 -10.44488 -10.05814 -9.09363 -8.19637 -5.54108 -0.52310 0.10829 1.21382 1.39698 1.44143 1.61812 1.80381 2.34105 2.66539 2.68019 2.92330 3.04983 3.08817 3.14294 3.34900 3.38847 3.56409 3.64317 3.71701 3.76837 3.86396 3.96809 4.09000 4.23816 4.32098 4.45326 4.46048 4.52436 4.56566 4.65614 4.66975 4.74319 4.77411 4.86520 4.92571 4.94855 5.01073 5.09031 5.12637 5.20247 5.53688 5.80455 6.10524 6.17869 6.76117 6.81078 6.88270 7.53142 7.92193 8.98934 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.004261 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.398596 B = 6569.253787 C = 8471.097097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.141 3.859 3 C -0.168 4.168 4 C -0.018 4.018 5 C -0.211 4.211 6 C 0.567 3.433 7 O -0.566 6.566 8 N -0.717 5.717 9 C 0.130 3.870 10 C -0.148 4.148 11 H 0.120 0.880 12 C 0.134 3.866 13 N -0.616 5.616 14 C -0.248 4.248 15 H 0.068 0.932 16 C -0.017 4.017 17 N -0.944 5.944 18 Si 0.921 3.079 19 H -0.270 1.270 20 H -0.314 1.314 21 H -0.268 1.268 22 C 0.142 3.858 23 C -0.162 4.162 24 C 0.303 3.697 25 F -0.202 7.202 26 F -0.205 7.205 27 C 0.133 3.867 28 N -0.513 5.513 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.183 0.817 33 H 0.157 0.843 34 H 0.408 0.592 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.263 0.737 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 14.509 -6.917 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.004 3.996 3 C -0.187 4.187 4 C -0.044 4.044 5 C -0.216 4.216 6 C 0.355 3.645 7 O -0.447 6.447 8 N -0.369 5.369 9 C 0.005 3.995 10 C -0.169 4.169 11 H 0.138 0.862 12 C 0.008 3.992 13 N -0.339 5.339 14 C -0.377 4.377 15 H 0.086 0.914 16 C -0.213 4.213 17 N -0.589 5.589 18 Si 0.750 3.250 19 H -0.196 1.196 20 H -0.243 1.243 21 H -0.193 1.193 22 C 0.017 3.983 23 C -0.201 4.201 24 C 0.266 3.734 25 F -0.183 7.183 26 F -0.187 7.187 27 C -0.025 4.025 28 N -0.223 5.223 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.200 0.800 33 H 0.174 0.826 34 H 0.246 0.754 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.185 14.398 -6.866 16.266 hybrid contribution 0.240 0.632 0.880 1.110 sum -2.945 15.030 -5.987 16.444 Atomic orbital electron populations 1.20927 0.85843 1.04910 1.04646 1.22294 0.99181 0.88051 0.90111 1.22359 0.93630 1.00754 1.01987 1.21954 0.95110 0.97327 0.90020 1.20886 0.93114 0.96726 1.10922 1.18266 0.87573 0.83148 0.75559 1.90737 1.67697 1.34554 1.51672 1.45908 1.07707 1.08737 1.74535 1.21281 0.79751 0.95170 1.03261 1.22874 0.93965 0.96741 1.03363 0.86224 1.21353 0.98422 0.85667 0.93769 1.44507 1.03844 1.01744 1.83841 1.18889 1.01149 0.89982 1.27709 0.91385 1.25698 0.96682 0.99090 0.99879 1.69913 1.05941 1.39050 1.43995 0.86334 0.77722 0.80899 0.80010 1.19645 1.24319 1.19281 1.21115 0.82687 1.00581 0.93935 1.22977 1.04380 0.90504 1.02275 1.20948 0.91000 0.90364 0.71070 1.92987 1.92216 1.84578 1.48551 1.92968 1.86157 1.84220 1.55309 1.23053 0.89874 0.97721 0.91844 1.67617 1.09433 1.30881 1.14399 0.88440 0.90884 0.87508 0.79962 0.82553 0.75445 0.89678 0.91416 0.94896 0.91345 0.92811 0.89691 0.94235 0.87893 0.86819 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.16 71.23 0.72 -0.61 16 2 C 0.14 2.86 6.78 42.57 0.29 3.15 16 3 C -0.17 -2.84 9.72 22.33 0.22 -2.62 16 4 C -0.02 -0.40 9.72 22.73 0.22 -0.18 16 5 C -0.21 -5.77 5.89 -19.99 -0.12 -5.89 16 6 C 0.57 17.69 7.78 86.79 0.68 18.36 16 7 O -0.57 -20.35 16.42 -3.87 -0.06 -20.41 16 8 N -0.72 -21.50 5.28 -465.99 -2.46 -23.97 16 9 C 0.13 3.94 4.83 86.38 0.42 4.36 16 10 C -0.15 -4.64 2.03 -10.71 -0.02 -4.66 16 11 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 12 C 0.13 5.19 3.07 86.36 0.27 5.46 16 13 N -0.62 -26.04 2.77 -699.09 -1.94 -27.98 16 14 C -0.25 -12.76 10.04 84.03 0.84 -11.91 16 15 H 0.07 3.77 8.05 -2.91 -0.02 3.75 16 16 C -0.02 -0.94 5.24 84.86 0.44 -0.50 16 17 N -0.94 -55.48 13.97 21.65 0.30 -55.18 16 18 Si 0.92 43.97 24.35 68.60 1.67 45.64 16 19 H -0.27 -11.92 6.70 99.48 0.67 -11.25 16 20 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 21 H -0.27 -12.65 6.46 99.48 0.64 -12.01 16 22 C 0.14 4.79 6.31 86.36 0.55 5.33 16 23 C -0.16 -4.39 5.62 30.67 0.17 -4.22 16 24 C 0.30 8.99 1.63 30.62 0.05 9.04 16 25 F -0.20 -5.81 16.41 44.97 0.74 -5.07 16 26 F -0.21 -6.65 15.73 44.97 0.71 -5.95 16 27 C 0.13 3.73 10.71 85.02 0.91 4.64 16 28 N -0.51 -14.04 10.25 -182.82 -1.87 -15.91 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.72 8.07 -2.39 -0.02 0.70 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.16 3.11 7.74 -2.91 -0.02 3.09 16 34 H 0.41 11.70 5.77 -92.70 -0.53 11.16 16 35 H 0.09 2.50 7.63 -2.38 -0.02 2.48 16 36 H 0.07 2.21 7.97 -2.39 -0.02 2.19 16 37 H 0.03 1.35 6.76 -2.39 -0.02 1.33 16 38 H 0.07 2.84 3.71 -2.38 -0.01 2.83 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.08 2.77 7.93 -2.39 -0.02 2.75 16 41 H 0.04 1.33 7.92 -2.39 -0.02 1.31 16 42 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.11 2.45 8.14 -2.38 -0.02 2.44 16 44 H 0.16 4.27 6.42 -2.91 -0.02 4.25 16 Total: -1.00 -68.36 360.04 3.12 -65.24 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.41 Total: 23.84 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 5.64 Total: 19.75 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -5.97 Total: -123.03 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.06 Total: -20.41 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 1.45 Total: -11.02 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.67 Total: 45.64 kcal Total: -68.36 3.12 -65.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046915589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.249 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds