Wall clock time and date at job start Sat Apr 11 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38178 * 119.55380 * 2 1 4 4 C 1.39795 * 119.00017 * 180.27219 * 3 2 1 5 5 C 1.48144 * 120.92263 * 179.74483 * 4 3 2 6 6 O 1.21508 * 120.00035 * 359.72735 * 5 4 3 7 7 N 1.34780 * 120.00079 * 179.71665 * 5 4 3 8 8 C 1.46493 * 120.00081 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47264 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.49600 * 305.06442 * 9 8 7 11 11 C 1.53631 * 109.45729 * 65.27274 * 9 8 7 12 12 N 1.46921 * 108.54361 * 174.74376 * 11 9 8 13 13 C 1.36930 * 120.63248 * 126.36461 * 12 11 9 14 14 H 1.07996 * 120.00454 * 332.05182 * 13 12 11 15 15 C 1.38819 * 119.99828 * 151.77351 * 13 12 11 16 16 N 1.31618 * 119.99931 * 343.03742 * 15 13 12 17 17 Si 1.86802 * 119.99862 * 163.03655 * 15 13 12 18 18 H 1.48499 * 109.46836 * 89.99852 * 17 15 13 19 19 H 1.48495 * 109.47106 * 210.00081 * 17 15 13 20 20 H 1.48502 * 109.47189 * 330.00259 * 17 15 13 21 21 C 1.46929 * 118.73654 * 306.09279 * 12 11 9 22 22 C 1.53195 * 108.77542 * 53.86174 * 21 12 11 23 23 C 1.53036 * 109.31130 * 305.36321 * 22 21 12 24 24 F 1.39898 * 109.46286 * 181.38714 * 23 22 21 25 25 F 1.39897 * 109.46348 * 301.35947 * 23 22 21 26 26 C 1.39844 * 118.15534 * 359.47531 * 4 3 2 27 27 C 1.38131 * 119.00162 * 0.27697 * 26 4 3 28 28 N 1.31796 * 119.55252 * 179.73712 * 2 1 3 29 29 H 1.09007 * 109.47033 * 270.26293 * 1 2 3 30 30 H 1.09001 * 109.46827 * 30.26143 * 1 2 3 31 31 H 1.08998 * 109.46997 * 150.26180 * 1 2 3 32 32 H 1.07996 * 120.49873 * 0.02562 * 3 2 1 33 33 H 0.97003 * 119.99835 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.47536 * 60.00628 * 8 7 5 35 35 H 1.09004 * 109.47497 * 300.00399 * 8 7 5 36 36 H 1.09003 * 109.74018 * 55.00415 * 11 9 8 37 37 H 1.09003 * 109.66401 * 294.43485 * 11 9 8 38 38 H 0.96993 * 119.99615 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.58411 * 173.64917 * 21 12 11 40 40 H 1.08997 * 109.58783 * 293.93391 * 21 12 11 41 41 H 1.08995 * 109.49792 * 65.31694 * 22 21 12 42 42 H 1.09006 * 109.49805 * 185.38347 * 22 21 12 43 43 H 1.07999 * 120.50059 * 180.24838 * 26 4 3 44 44 H 1.07995 * 119.54988 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2020 0.0000 4 6 3.5864 1.1885 -0.0058 5 6 4.3599 2.4520 -0.0117 6 8 3.7797 3.5195 -0.0165 7 7 5.7073 2.4173 -0.0115 8 6 6.4722 3.6667 -0.0167 9 6 7.9688 3.3485 -0.0160 10 1 8.2021 2.6988 0.8276 11 6 8.3429 2.6441 -1.3290 12 7 9.8004 2.4618 -1.3626 13 6 10.3438 1.2235 -1.5781 14 1 9.8004 0.3370 -1.2862 15 6 11.5908 1.1075 -2.1770 16 7 12.1029 2.1268 -2.8336 17 14 12.5419 -0.4953 -2.0511 18 1 12.1863 -1.3730 -3.1949 19 1 13.9989 -0.2099 -2.0803 20 1 12.1965 -1.1772 -0.7779 21 6 10.6637 3.6344 -1.1667 22 6 10.2635 4.3286 0.1390 23 6 8.7674 4.6484 0.1043 24 9 8.4048 5.3109 1.2819 25 9 8.4913 5.4681 -0.9953 26 6 4.2344 -0.0507 -0.0001 27 6 3.4741 -1.2040 0.0051 28 7 2.1571 -1.1465 0.0053 29 1 -0.3633 0.0047 1.0277 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3633 -0.8923 -0.5098 32 1 1.6494 2.1378 0.0004 33 1 6.1705 1.5650 -0.0078 34 1 6.2237 4.2486 0.8708 35 1 6.2237 4.2411 -0.9092 36 1 8.0314 3.2551 -2.1763 37 1 7.8519 1.6721 -1.3767 38 1 12.9740 2.0456 -3.2523 39 1 11.7045 3.3160 -1.1072 40 1 10.5394 4.3233 -2.0022 41 1 10.4753 3.6698 0.9811 42 1 10.8311 5.2528 0.2485 43 1 5.3130 -0.1053 -0.0002 44 1 3.9653 -2.1658 0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046983410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:18 Heat of formation + Delta-G solvation = -85.010476 kcal Electronic energy + Delta-G solvation = -29706.595499 eV Core-core repulsion = 25294.911867 eV Total energy + Delta-G solvation = -4411.683632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.58533 -46.53615 -40.86263 -39.32223 -37.41566 -35.18366 -33.59836 -32.73477 -32.54810 -30.85038 -30.26226 -27.94405 -26.31719 -25.27531 -24.13505 -23.08161 -22.44585 -21.51194 -20.52670 -19.62212 -18.20788 -17.15540 -16.97744 -16.82739 -16.19307 -15.90675 -15.64683 -15.54227 -15.37819 -15.03755 -14.84687 -14.64542 -14.13049 -13.99035 -13.66614 -13.46010 -13.29178 -13.16217 -12.98843 -12.84872 -12.68134 -12.57213 -12.28328 -11.98265 -11.74765 -11.66998 -11.62169 -11.29146 -10.86531 -10.70626 -10.60991 -10.44161 -10.14034 -10.12739 -9.98575 -9.82570 -9.66971 -9.27189 -9.17651 -8.66742 -6.95945 -5.99317 -3.44353 0.46412 0.78735 2.70966 2.86821 3.25905 3.34025 3.34843 3.56926 3.96821 4.11760 4.30959 4.34260 4.41461 4.55695 4.59767 4.68785 4.75526 4.82597 5.08832 5.13487 5.19952 5.21580 5.28351 5.34113 5.41912 5.46322 5.54303 5.61131 5.72714 5.77095 5.82742 5.91531 6.08822 6.20012 6.21785 6.25286 6.33459 6.36280 6.61369 7.04699 7.29505 7.40031 7.59281 7.63730 7.98181 8.20861 8.96920 9.59411 10.14667 11.09742 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.003251 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.115603 B = 8610.168536 C =10716.038647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.122 3.878 3 C -0.116 4.116 4 C -0.080 4.080 5 C 0.557 3.443 6 O -0.531 6.531 7 N -0.712 5.712 8 C 0.124 3.876 9 C -0.156 4.156 10 H 0.103 0.897 11 C 0.153 3.847 12 N -0.590 5.590 13 C -0.264 4.264 14 H 0.069 0.931 15 C 0.008 3.992 16 N -0.898 5.898 17 Si 0.905 3.095 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.169 3.831 22 C -0.178 4.178 23 C 0.301 3.699 24 F -0.213 7.213 25 F -0.199 7.199 26 C -0.147 4.147 27 C 0.103 3.897 28 N -0.472 5.472 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.404 0.596 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.065 0.935 38 H 0.257 0.743 39 H 0.101 0.899 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.142 0.858 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.795 -2.333 7.156 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.137 4.137 4 C -0.091 4.091 5 C 0.343 3.657 6 O -0.408 6.408 7 N -0.364 5.364 8 C 0.000 4.000 9 C -0.178 4.178 10 H 0.121 0.879 11 C 0.025 3.975 12 N -0.311 5.311 13 C -0.393 4.393 14 H 0.087 0.913 15 C -0.192 4.192 16 N -0.541 5.541 17 Si 0.734 3.266 18 H -0.212 1.212 19 H -0.214 1.214 20 H -0.203 1.203 21 C 0.043 3.957 22 C -0.218 4.218 23 C 0.264 3.736 24 F -0.194 7.194 25 F -0.180 7.180 26 C -0.168 4.168 27 C -0.054 4.054 28 N -0.183 5.183 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.165 0.835 33 H 0.241 0.759 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.051 0.949 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.160 0.840 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.489 -2.275 7.045 17.167 hybrid contribution 1.409 -0.204 0.041 1.424 sum -14.080 -2.478 7.086 15.956 Atomic orbital electron populations 1.20736 0.88282 1.03776 1.03326 1.21324 0.97348 0.87808 0.95086 1.22117 0.93249 1.00131 0.98190 1.20383 0.94521 0.93516 1.00713 1.18144 0.82191 0.88440 0.76963 1.90782 1.69885 1.30762 1.49322 1.45845 1.05745 1.10478 1.74370 1.21398 0.89451 0.85747 1.03362 1.23074 0.93010 0.96524 1.05200 0.87900 1.21002 0.87399 0.97821 0.91243 1.44101 0.98505 1.05655 1.82873 1.19128 1.01846 0.83974 1.34342 0.91313 1.25099 0.99897 0.97516 0.96695 1.70012 1.18485 1.30940 1.34703 0.86271 0.79315 0.82952 0.78052 1.21216 1.21427 1.20323 1.20849 0.97710 0.87483 0.89615 1.23267 0.90631 1.02712 1.05210 1.21011 0.97327 0.84329 0.70920 1.92959 1.93564 1.83438 1.49461 1.92969 1.95178 1.75160 1.54667 1.22408 1.01843 0.92617 0.99922 1.22761 0.89067 0.98559 0.94971 1.67408 1.10353 1.29472 1.11029 0.90185 0.90405 0.90225 0.83490 0.75949 0.90688 0.90314 0.94835 0.91701 0.93262 0.88080 0.94913 0.89539 0.90481 0.84009 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.16 36.01 0.37 -0.36 16 2 C 0.12 1.24 6.78 -82.63 -0.56 0.68 16 3 C -0.12 -1.27 9.31 -39.02 -0.36 -1.63 16 4 C -0.08 -0.93 5.91 -104.65 -0.62 -1.55 16 5 C 0.56 7.66 7.80 -12.19 -0.10 7.57 16 6 O -0.53 -9.00 16.45 5.36 0.09 -8.91 16 7 N -0.71 -9.01 5.29 -61.16 -0.32 -9.33 16 8 C 0.12 1.80 4.83 -4.04 -0.02 1.78 16 9 C -0.16 -2.45 2.04 -90.27 -0.18 -2.63 16 10 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 11 C 0.15 2.81 5.42 -3.48 -0.02 2.79 16 12 N -0.59 -13.23 2.99 -172.05 -0.51 -13.75 16 13 C -0.26 -6.51 9.58 -15.06 -0.14 -6.65 16 14 H 0.07 1.62 7.89 -52.49 -0.41 1.21 16 15 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 16 N -0.90 -24.34 11.18 55.49 0.62 -23.72 16 17 Si 0.91 20.06 29.59 -169.99 -5.03 15.03 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.17 3.71 5.10 -3.71 -0.02 3.69 16 22 C -0.18 -3.16 5.62 -26.61 -0.15 -3.31 16 23 C 0.30 5.15 1.63 -26.69 -0.04 5.11 16 24 F -0.21 -3.57 16.40 2.25 0.04 -3.54 16 25 F -0.20 -3.71 15.73 2.25 0.04 -3.68 16 26 C -0.15 -1.42 9.62 -39.02 -0.38 -1.79 16 27 C 0.10 0.98 11.17 -17.59 -0.20 0.78 16 28 N -0.47 -5.16 10.25 -9.52 -0.10 -5.26 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.15 1.51 7.74 -52.49 -0.41 1.11 16 33 H 0.40 4.29 5.86 -40.82 -0.24 4.05 16 34 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 35 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 36 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 37 H 0.06 1.09 7.16 -51.93 -0.37 0.72 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.10 2.45 6.04 -51.93 -0.31 2.14 16 40 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.14 1.07 6.54 -52.49 -0.34 0.72 16 44 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -30.38 366.92 -7.97 -38.35 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.81 Total: 4.69 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.51 Total: 4.57 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.31 Total: -52.06 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.07 Total: -7.21 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.38 -7.97 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046983410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.657 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds