Wall clock time and date at job start Sat Apr 11 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38178 * 119.55380 * 2 1 4 4 C 1.39795 * 119.00017 * 180.27219 * 3 2 1 5 5 C 1.48144 * 120.92263 * 179.74483 * 4 3 2 6 6 O 1.21508 * 120.00035 * 359.72735 * 5 4 3 7 7 N 1.34780 * 120.00079 * 179.71665 * 5 4 3 8 8 C 1.46493 * 120.00081 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47264 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.49600 * 305.06442 * 9 8 7 11 11 C 1.53631 * 109.45729 * 65.27274 * 9 8 7 12 12 N 1.46921 * 108.54361 * 174.74376 * 11 9 8 13 13 C 1.36930 * 120.63248 * 126.36461 * 12 11 9 14 14 H 1.07996 * 120.00454 * 332.05182 * 13 12 11 15 15 C 1.38819 * 119.99828 * 151.77351 * 13 12 11 16 16 N 1.31618 * 119.99931 * 343.03742 * 15 13 12 17 17 Si 1.86802 * 119.99862 * 163.03655 * 15 13 12 18 18 H 1.48499 * 109.46836 * 89.99852 * 17 15 13 19 19 H 1.48495 * 109.47106 * 210.00081 * 17 15 13 20 20 H 1.48502 * 109.47189 * 330.00259 * 17 15 13 21 21 C 1.46929 * 118.73654 * 306.09279 * 12 11 9 22 22 C 1.53195 * 108.77542 * 53.86174 * 21 12 11 23 23 C 1.53036 * 109.31130 * 305.36321 * 22 21 12 24 24 F 1.39898 * 109.46286 * 181.38714 * 23 22 21 25 25 F 1.39897 * 109.46348 * 301.35947 * 23 22 21 26 26 C 1.39844 * 118.15534 * 359.47531 * 4 3 2 27 27 C 1.38131 * 119.00162 * 0.27697 * 26 4 3 28 28 N 1.31796 * 119.55252 * 179.73712 * 2 1 3 29 29 H 1.09007 * 109.47033 * 270.26293 * 1 2 3 30 30 H 1.09001 * 109.46827 * 30.26143 * 1 2 3 31 31 H 1.08998 * 109.46997 * 150.26180 * 1 2 3 32 32 H 1.07996 * 120.49873 * 0.02562 * 3 2 1 33 33 H 0.97003 * 119.99835 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.47536 * 60.00628 * 8 7 5 35 35 H 1.09004 * 109.47497 * 300.00399 * 8 7 5 36 36 H 1.09003 * 109.74018 * 55.00415 * 11 9 8 37 37 H 1.09003 * 109.66401 * 294.43485 * 11 9 8 38 38 H 0.96993 * 119.99615 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.58411 * 173.64917 * 21 12 11 40 40 H 1.08997 * 109.58783 * 293.93391 * 21 12 11 41 41 H 1.08995 * 109.49792 * 65.31694 * 22 21 12 42 42 H 1.09006 * 109.49805 * 185.38347 * 22 21 12 43 43 H 1.07999 * 120.50059 * 180.24838 * 26 4 3 44 44 H 1.07995 * 119.54988 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2020 0.0000 4 6 3.5864 1.1885 -0.0058 5 6 4.3599 2.4520 -0.0117 6 8 3.7797 3.5195 -0.0165 7 7 5.7073 2.4173 -0.0115 8 6 6.4722 3.6667 -0.0167 9 6 7.9688 3.3485 -0.0160 10 1 8.2021 2.6988 0.8276 11 6 8.3429 2.6441 -1.3290 12 7 9.8004 2.4618 -1.3626 13 6 10.3438 1.2235 -1.5781 14 1 9.8004 0.3370 -1.2862 15 6 11.5908 1.1075 -2.1770 16 7 12.1029 2.1268 -2.8336 17 14 12.5419 -0.4953 -2.0511 18 1 12.1863 -1.3730 -3.1949 19 1 13.9989 -0.2099 -2.0803 20 1 12.1965 -1.1772 -0.7779 21 6 10.6637 3.6344 -1.1667 22 6 10.2635 4.3286 0.1390 23 6 8.7674 4.6484 0.1043 24 9 8.4048 5.3109 1.2819 25 9 8.4913 5.4681 -0.9953 26 6 4.2344 -0.0507 -0.0001 27 6 3.4741 -1.2040 0.0051 28 7 2.1571 -1.1465 0.0053 29 1 -0.3633 0.0047 1.0277 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3633 -0.8923 -0.5098 32 1 1.6494 2.1378 0.0004 33 1 6.1705 1.5650 -0.0078 34 1 6.2237 4.2486 0.8708 35 1 6.2237 4.2411 -0.9092 36 1 8.0314 3.2551 -2.1763 37 1 7.8519 1.6721 -1.3767 38 1 12.9740 2.0456 -3.2523 39 1 11.7045 3.3160 -1.1072 40 1 10.5394 4.3233 -2.0022 41 1 10.4753 3.6698 0.9811 42 1 10.8311 5.2528 0.2485 43 1 5.3130 -0.1053 -0.0002 44 1 3.9653 -2.1658 0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046983410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:17 Heat of formation + Delta-G solvation = -103.133916 kcal Electronic energy + Delta-G solvation = -29707.381391 eV Core-core repulsion = 25294.911867 eV Total energy + Delta-G solvation = -4412.469523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.00184 -47.95774 -41.74198 -40.33345 -38.93262 -36.52130 -34.66852 -34.03044 -33.42447 -32.24853 -31.93197 -28.59515 -27.61485 -27.00334 -25.21737 -24.03840 -23.78792 -22.95517 -21.61035 -21.07907 -19.27786 -18.69945 -18.30525 -17.99505 -17.35386 -17.06813 -16.97452 -16.65697 -16.54220 -16.43463 -15.87382 -15.78773 -15.36929 -15.28681 -14.93853 -14.80284 -14.65546 -14.33616 -14.27738 -14.16602 -13.81907 -13.33749 -13.26478 -13.19791 -13.10188 -13.06442 -13.03493 -12.69301 -12.55547 -12.30341 -12.19505 -11.90911 -11.64983 -11.59289 -11.24384 -11.01107 -10.56701 -10.55348 -10.29759 -9.98651 -8.80201 -7.90269 -5.37023 -0.39049 0.04885 1.51393 1.54524 1.62508 1.71900 1.80256 2.50346 2.76972 2.77779 3.14441 3.21957 3.25370 3.32858 3.41974 3.50757 3.60188 3.71469 3.89313 3.92245 4.01328 4.05385 4.22490 4.41364 4.47155 4.53694 4.57520 4.64116 4.72006 4.76263 4.78864 4.82686 4.87738 4.92951 5.02579 5.04496 5.15826 5.19056 5.29918 5.59823 5.61800 5.67428 6.28234 6.34533 6.89496 6.94212 7.08860 7.76646 8.29356 9.17860 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.003251 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.115603 B = 8610.168536 C =10716.038647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.116 3.884 3 C -0.127 4.127 4 C -0.096 4.096 5 C 0.558 3.442 6 O -0.569 6.569 7 N -0.702 5.702 8 C 0.134 3.866 9 C -0.139 4.139 10 H 0.123 0.877 11 C 0.154 3.846 12 N -0.604 5.604 13 C -0.263 4.263 14 H 0.083 0.917 15 C -0.047 4.047 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.288 1.288 19 H -0.299 1.299 20 H -0.263 1.263 21 C 0.177 3.823 22 C -0.168 4.168 23 C 0.299 3.701 24 F -0.207 7.207 25 F -0.210 7.210 26 C -0.142 4.142 27 C 0.101 3.899 28 N -0.489 5.489 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.416 0.584 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.016 0.984 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.074 0.926 40 H 0.003 0.997 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.164 0.836 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.734 -4.113 8.619 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.021 4.021 3 C -0.148 4.148 4 C -0.107 4.107 5 C 0.346 3.654 6 O -0.448 6.448 7 N -0.355 5.355 8 C 0.010 3.990 9 C -0.160 4.160 10 H 0.141 0.859 11 C 0.027 3.973 12 N -0.327 5.327 13 C -0.393 4.393 14 H 0.101 0.899 15 C -0.243 4.243 16 N -0.581 5.581 17 Si 0.795 3.205 18 H -0.215 1.215 19 H -0.226 1.226 20 H -0.188 1.188 21 C 0.050 3.950 22 C -0.208 4.208 23 C 0.263 3.737 24 F -0.188 7.188 25 F -0.191 7.191 26 C -0.163 4.163 27 C -0.056 4.056 28 N -0.200 5.200 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.164 0.836 33 H 0.255 0.745 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.021 0.979 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.182 0.818 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.451 -4.078 8.530 18.974 hybrid contribution 1.646 0.362 -0.431 1.740 sum -14.805 -3.716 8.099 17.280 Atomic orbital electron populations 1.20822 0.86358 1.04538 1.04286 1.21729 0.98715 0.87284 0.94351 1.22224 0.93271 1.00587 0.98694 1.20309 0.94735 0.93190 1.02439 1.18468 0.82288 0.88743 0.75935 1.90761 1.70586 1.32311 1.51167 1.45703 1.05483 1.10399 1.73885 1.21170 0.88712 0.86424 1.02714 1.22876 0.93389 0.95662 1.04118 0.85943 1.21072 0.85265 0.98889 0.92035 1.44331 1.00147 1.05180 1.83016 1.19572 1.01757 0.85220 1.32727 0.89911 1.25833 1.01139 1.00210 0.97105 1.70171 1.18532 1.32944 1.36462 0.85288 0.77273 0.79623 0.78283 1.21476 1.22574 1.18780 1.20568 0.96523 0.87124 0.90752 1.23092 0.91364 1.03227 1.03069 1.21059 0.97136 0.84787 0.70757 1.92971 1.93452 1.83376 1.48966 1.92956 1.95210 1.75593 1.55373 1.22629 1.02974 0.91738 0.98928 1.23275 0.88766 0.99698 0.93825 1.67491 1.11226 1.29786 1.11493 0.89034 0.89171 0.89923 0.83590 0.74527 0.90624 0.91813 0.96648 0.89740 0.94023 0.90750 0.97876 0.88079 0.89055 0.81813 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.16 71.24 0.72 -0.55 16 2 C 0.12 2.19 6.78 42.55 0.29 2.48 16 3 C -0.13 -2.66 9.31 22.63 0.21 -2.45 16 4 C -0.10 -2.09 5.91 -19.88 -0.12 -2.21 16 5 C 0.56 14.77 7.80 86.87 0.68 15.45 16 6 O -0.57 -19.19 16.45 -3.74 -0.06 -19.25 16 7 N -0.70 -16.40 5.29 -465.70 -2.46 -18.87 16 8 C 0.13 3.69 4.83 86.38 0.42 4.11 16 9 C -0.14 -4.07 2.04 -10.57 -0.02 -4.09 16 10 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 11 C 0.15 5.44 5.42 86.51 0.47 5.91 16 12 N -0.60 -26.70 2.99 -698.23 -2.09 -28.78 16 13 C -0.26 -12.67 9.58 84.04 0.81 -11.87 16 14 H 0.08 3.69 7.89 -2.91 -0.02 3.67 16 15 C -0.05 -2.40 4.92 84.86 0.42 -1.98 16 16 N -0.94 -51.79 11.18 21.65 0.24 -51.55 16 17 Si 0.97 40.95 29.59 68.60 2.03 42.98 16 18 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 C 0.18 7.79 5.10 86.36 0.44 8.23 16 22 C -0.17 -5.74 5.62 30.67 0.17 -5.57 16 23 C 0.30 9.80 1.63 30.62 0.05 9.85 16 24 F -0.21 -6.47 16.40 44.97 0.74 -5.74 16 25 F -0.21 -7.78 15.73 44.97 0.71 -7.07 16 26 C -0.14 -2.38 9.62 22.63 0.22 -2.16 16 27 C 0.10 1.65 11.17 84.67 0.95 2.59 16 28 N -0.49 -9.73 10.25 -184.04 -1.89 -11.62 16 29 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.15 2.98 7.74 -2.91 -0.02 2.96 16 33 H 0.42 7.61 5.86 -92.71 -0.54 7.07 16 34 H 0.08 2.13 7.63 -2.39 -0.02 2.11 16 35 H 0.06 1.98 7.97 -2.39 -0.02 1.96 16 36 H 0.02 0.61 7.92 -2.39 -0.02 0.59 16 37 H 0.08 2.63 7.16 -2.39 -0.02 2.61 16 38 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 39 H 0.07 3.70 6.04 -2.39 -0.01 3.68 16 40 H 0.00 0.15 7.93 -2.39 -0.02 0.13 16 41 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 43 H 0.16 1.89 6.54 -2.91 -0.02 1.87 16 44 H 0.19 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -65.87 366.92 3.41 -62.46 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.50 Total: 19.68 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 5.70 Total: 17.75 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -6.19 Total: -110.82 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 1.44 Total: -12.81 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -65.87 3.41 -62.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046983410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.672 kcal (2) G-P(sol) polarization free energy of solvation -65.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds