Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99833 * 2 1 4 4 H 1.48499 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47225 * 300.00464 * 3 2 1 6 6 H 1.48502 * 109.47200 * 60.00260 * 3 2 1 7 7 C 1.38810 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.47210 * 135.97340 * 179.97438 * 9 7 2 11 11 C 1.52704 * 87.86272 * 206.46543 * 10 9 7 12 12 C 1.47209 * 135.97080 * 0.05964 * 9 7 2 13 13 C 1.53659 * 115.26539 * 219.28023 * 11 10 9 14 14 C 1.55493 * 101.96603 * 206.90241 * 13 11 10 15 15 H 1.08997 * 111.10475 * 151.43520 * 14 13 11 16 16 N 1.46497 * 111.13922 * 275.52965 * 14 13 11 17 17 C 1.34778 * 119.99961 * 198.13407 * 16 14 13 18 18 O 1.21285 * 119.99813 * 0.02562 * 17 16 14 19 19 C 1.50694 * 120.00162 * 179.97438 * 17 16 14 20 20 N 1.46500 * 109.47176 * 180.02562 * 19 17 16 21 21 C 1.46088 * 118.73132 * 90.00300 * 20 19 17 22 22 C 1.53025 * 109.92742 * 161.62183 * 21 20 19 23 23 O 1.43241 * 108.66890 * 49.15790 * 22 21 20 24 24 C 1.42965 * 112.99199 * 291.63676 * 23 22 21 25 25 C 1.33878 * 118.73028 * 269.73117 * 20 19 17 26 26 O 1.21280 * 118.83018 * 1.90479 * 25 20 19 27 27 C 1.55017 * 101.04476 * 33.48722 * 14 13 11 28 28 O 1.42402 * 116.14002 * 90.73415 * 11 10 9 29 29 H 0.96998 * 120.00240 * 359.97438 * 1 2 3 30 30 H 1.09002 * 113.50029 * 321.23146 * 10 9 7 31 31 H 1.08997 * 113.49592 * 91.70561 * 10 9 7 32 32 H 1.09001 * 113.49691 * 268.22761 * 12 9 7 33 33 H 1.08995 * 113.50212 * 38.70647 * 12 9 7 34 34 H 1.09002 * 110.93075 * 325.07023 * 13 11 10 35 35 H 1.09002 * 110.93025 * 88.73421 * 13 11 10 36 36 H 0.97001 * 120.00134 * 18.13448 * 16 14 13 37 37 H 1.09005 * 109.47474 * 299.99764 * 19 17 16 38 38 H 1.08999 * 109.47284 * 60.00524 * 19 17 16 39 39 H 1.08997 * 109.39646 * 281.75601 * 21 20 19 40 40 H 1.09000 * 109.39990 * 41.47924 * 21 20 19 41 41 H 1.08997 * 109.60170 * 168.91909 * 22 21 20 42 42 H 1.09006 * 109.60055 * 289.40507 * 22 21 20 43 43 H 1.08995 * 109.41727 * 169.70300 * 24 23 22 44 44 H 1.09003 * 109.41747 * 289.57345 * 24 23 22 45 45 H 1.09000 * 110.30114 * 205.04742 * 27 14 13 46 46 H 1.09001 * 110.29857 * 82.90172 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.6825 -3.8162 -0.0015 11 6 0.3429 -4.0918 -0.6806 12 6 -0.0896 -2.7931 -0.0011 13 6 -0.3866 -5.3571 -0.2030 14 6 -1.2302 -5.7343 -1.4535 15 1 -1.4072 -6.8089 -1.4980 16 7 -2.4936 -4.9932 -1.4817 17 6 -3.5104 -5.4239 -2.2544 18 8 -3.3796 -6.4252 -2.9261 19 6 -4.8102 -4.6619 -2.2830 20 7 -5.7470 -5.3282 -3.1911 21 6 -6.6337 -6.3575 -2.6541 22 6 -7.8040 -6.5895 -3.6123 23 8 -7.2851 -6.7647 -4.9359 24 6 -6.7136 -5.5700 -5.4743 25 6 -5.7613 -4.9663 -4.4800 26 8 -4.9750 -4.1247 -4.8599 27 6 -0.2885 -5.2758 -2.5963 28 8 0.3477 -4.0824 -2.1046 29 1 -0.4850 0.8400 0.0004 30 1 2.5435 -4.0487 -0.6282 31 1 1.7598 -4.2455 0.9974 32 1 -0.4994 -2.9421 0.9978 33 1 -0.7218 -2.1630 -0.6267 34 1 0.3235 -6.1474 0.0406 35 1 -1.0300 -5.1374 0.6490 36 1 -2.5983 -4.1926 -0.9442 37 1 -5.2361 -4.6321 -1.2800 38 1 -4.6277 -3.6451 -2.6306 39 1 -6.0771 -7.2865 -2.5310 40 1 -7.0170 -6.0359 -1.6857 41 1 -8.3505 -7.4836 -3.3123 42 1 -8.4700 -5.7268 -3.5918 43 1 -6.1790 -5.8067 -6.3942 44 1 -7.5069 -4.8542 -5.6902 45 1 -0.8644 -5.0545 -3.4950 46 1 0.4567 -6.0439 -2.8033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053830912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = -71.479451 kcal Electronic energy + Delta-G solvation = -30410.592839 eV Core-core repulsion = 26110.583471 eV Total energy + Delta-G solvation = -4300.009367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12146 -40.24241 -38.97656 -37.93340 -36.33815 -35.53945 -34.21492 -32.11802 -31.15103 -30.48178 -29.23694 -28.14532 -26.27803 -25.67685 -24.77154 -24.24498 -22.31212 -21.51113 -20.58668 -19.35443 -19.01979 -18.05702 -17.56668 -17.44612 -16.78961 -16.38790 -16.14708 -15.77766 -15.38424 -15.04754 -14.98998 -14.91005 -14.58542 -14.24181 -13.94739 -13.79437 -13.54295 -13.31904 -13.26314 -13.16536 -12.84363 -12.34974 -12.09049 -12.06401 -11.69677 -11.55019 -11.41802 -11.36924 -11.09343 -10.92605 -10.83839 -10.46108 -10.33036 -10.10417 -9.80214 -9.74680 -9.49625 -9.13768 -9.00970 -8.82474 -8.55068 -6.86419 -5.74382 -3.05281 2.17302 2.39913 2.56718 3.21171 3.34273 3.41518 3.46761 3.49385 3.95609 4.18398 4.33626 4.45796 4.51246 4.54911 4.63657 4.76325 4.83272 4.86921 5.00383 5.02403 5.08228 5.15676 5.23463 5.25162 5.37472 5.38658 5.48069 5.59442 5.79674 5.87041 5.89358 5.93743 6.06064 6.34838 6.37492 6.48217 6.54941 6.62389 6.90351 6.99520 7.18320 7.46072 7.53466 7.76909 7.81484 8.00935 8.17522 9.06290 9.73124 10.65132 11.43855 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002628 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.938721 B =10650.817607 C =11549.617787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.212 4.212 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.110 3.890 11 C 0.052 3.948 12 C 0.153 3.847 13 C -0.143 4.143 14 C 0.114 3.886 15 H 0.102 0.898 16 N -0.711 5.711 17 C 0.502 3.498 18 O -0.536 6.536 19 C 0.089 3.911 20 N -0.587 5.587 21 C 0.079 3.921 22 C 0.045 3.955 23 O -0.369 6.369 24 C 0.054 3.946 25 C 0.490 3.510 26 O -0.531 6.531 27 C 0.039 3.961 28 O -0.334 6.334 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.408 0.592 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.132 0.868 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -16.158 -2.478 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.339 4.339 8 H 0.099 0.901 9 N -0.327 5.327 10 C -0.016 4.016 11 C 0.011 3.989 12 C 0.027 3.973 13 C -0.182 4.182 14 C 0.008 3.992 15 H 0.119 0.881 16 N -0.363 5.363 17 C 0.287 3.713 18 O -0.413 6.413 19 C -0.038 4.038 20 N -0.321 5.321 21 C -0.044 4.044 22 C -0.032 4.032 23 O -0.287 6.287 24 C -0.025 4.025 25 C 0.278 3.722 26 O -0.407 6.407 27 C -0.039 4.039 28 O -0.252 6.252 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.243 0.757 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.083 0.917 43 H 0.150 0.850 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.170 -16.074 -3.417 23.767 hybrid contribution 0.449 1.340 0.751 1.601 sum -16.721 -14.735 -2.665 22.446 Atomic orbital electron populations 1.69816 1.05000 1.25127 1.56858 1.24768 0.95731 0.97477 1.02548 0.86020 0.78730 0.83653 0.77214 1.20470 1.21669 1.21795 1.18950 0.90130 0.81310 1.43551 0.90069 1.45350 1.02333 0.99167 1.85857 1.22704 0.95270 0.87150 0.96502 1.23475 0.98334 0.95206 0.81868 1.22375 0.89701 0.89310 0.95907 1.23215 0.98844 0.98795 0.97327 1.22546 0.83622 0.97071 0.95923 0.88051 1.45874 1.13007 1.30444 1.46998 1.21032 0.85674 0.85397 0.79209 1.90693 1.82815 1.25980 1.41798 1.21410 0.88194 0.98490 0.95663 1.47011 1.37329 1.39211 1.08529 1.22236 0.91741 0.92296 0.98082 1.23014 0.94327 1.03620 0.82255 1.88211 1.77582 1.32619 1.30240 1.22821 0.95484 0.87824 0.96407 1.21022 0.85251 0.82833 0.83103 1.90803 1.39509 1.33129 1.77286 1.23833 0.94303 0.88556 0.97181 1.88474 1.78912 1.39476 1.18355 0.93793 0.93608 0.93958 0.94838 0.90507 0.89113 0.89270 0.75700 0.87117 0.86120 0.90096 0.89457 0.86545 0.91739 0.85026 0.89139 0.89907 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 11.51 55.49 0.64 -26.90 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 7 C -0.21 -6.13 10.74 -15.06 -0.16 -6.30 16 8 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 9 N -0.60 -15.88 3.79 -184.49 -0.70 -16.58 16 10 C 0.11 2.31 8.20 -8.07 -0.07 2.25 16 11 C 0.05 0.99 1.75 -90.53 -0.16 0.83 16 12 C 0.15 3.53 6.87 -8.01 -0.06 3.47 16 13 C -0.14 -1.92 5.97 -25.06 -0.15 -2.07 16 14 C 0.11 1.55 3.37 -65.54 -0.22 1.33 16 15 H 0.10 1.30 7.74 -51.93 -0.40 0.90 16 16 N -0.71 -9.28 5.24 -51.50 -0.27 -9.55 16 17 C 0.50 6.82 7.89 -10.99 -0.09 6.73 16 18 O -0.54 -9.02 16.18 5.55 0.09 -8.93 16 19 C 0.09 0.94 5.77 -5.20 -0.03 0.91 16 20 N -0.59 -6.18 2.32 -175.79 -0.41 -6.59 16 21 C 0.08 0.54 6.67 -4.25 -0.03 0.51 16 22 C 0.04 0.25 6.89 37.17 0.26 0.50 16 23 O -0.37 -3.23 10.86 -35.23 -0.38 -3.62 16 24 C 0.05 0.48 6.98 35.83 0.25 0.73 16 25 C 0.49 6.13 7.58 -11.56 -0.09 6.04 16 26 O -0.53 -8.91 16.38 5.56 0.09 -8.82 16 27 C 0.04 0.64 7.49 38.22 0.29 0.93 16 28 O -0.33 -6.92 11.17 -35.23 -0.39 -7.32 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.03 0.74 7.95 -51.93 -0.41 0.33 16 33 H 0.08 2.01 7.15 -51.93 -0.37 1.64 16 34 H 0.09 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.09 1.08 7.82 -51.93 -0.41 0.67 16 36 H 0.41 5.00 8.62 -40.82 -0.35 4.64 16 37 H 0.11 0.72 7.93 -51.93 -0.41 0.31 16 38 H 0.12 1.42 7.28 -51.93 -0.38 1.04 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.34 7.99 -51.93 -0.41 -0.07 16 41 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.26 8.10 -51.93 -0.42 -0.16 16 43 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -39.26 379.98 -7.90 -47.16 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.92 Total: 2.29 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: -0.35 Total: 15.51 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.74 Total: -59.62 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.60 Total: -28.68 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.26 -7.90 -47.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053830912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.321 kcal (2) G-P(sol) polarization free energy of solvation -39.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds