Wall clock time and date at job start Sat Apr 11 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99833 * 2 1 4 4 H 1.48499 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47225 * 300.00464 * 3 2 1 6 6 H 1.48502 * 109.47200 * 60.00260 * 3 2 1 7 7 C 1.38810 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.47210 * 135.97340 * 179.97438 * 9 7 2 11 11 C 1.52704 * 87.86272 * 206.46543 * 10 9 7 12 12 C 1.47209 * 135.97080 * 0.05964 * 9 7 2 13 13 C 1.53659 * 115.26539 * 219.28023 * 11 10 9 14 14 C 1.55493 * 101.96603 * 206.90241 * 13 11 10 15 15 H 1.08997 * 111.10475 * 151.43520 * 14 13 11 16 16 N 1.46497 * 111.13922 * 275.52965 * 14 13 11 17 17 C 1.34778 * 119.99961 * 198.13407 * 16 14 13 18 18 O 1.21285 * 119.99813 * 0.02562 * 17 16 14 19 19 C 1.50694 * 120.00162 * 179.97438 * 17 16 14 20 20 N 1.46500 * 109.47176 * 180.02562 * 19 17 16 21 21 C 1.46088 * 118.73132 * 90.00300 * 20 19 17 22 22 C 1.53025 * 109.92742 * 161.62183 * 21 20 19 23 23 O 1.43241 * 108.66890 * 49.15790 * 22 21 20 24 24 C 1.42965 * 112.99199 * 291.63676 * 23 22 21 25 25 C 1.33878 * 118.73028 * 269.73117 * 20 19 17 26 26 O 1.21280 * 118.83018 * 1.90479 * 25 20 19 27 27 C 1.55017 * 101.04476 * 33.48722 * 14 13 11 28 28 O 1.42402 * 116.14002 * 90.73415 * 11 10 9 29 29 H 0.96998 * 120.00240 * 359.97438 * 1 2 3 30 30 H 1.09002 * 113.50029 * 321.23146 * 10 9 7 31 31 H 1.08997 * 113.49592 * 91.70561 * 10 9 7 32 32 H 1.09001 * 113.49691 * 268.22761 * 12 9 7 33 33 H 1.08995 * 113.50212 * 38.70647 * 12 9 7 34 34 H 1.09002 * 110.93075 * 325.07023 * 13 11 10 35 35 H 1.09002 * 110.93025 * 88.73421 * 13 11 10 36 36 H 0.97001 * 120.00134 * 18.13448 * 16 14 13 37 37 H 1.09005 * 109.47474 * 299.99764 * 19 17 16 38 38 H 1.08999 * 109.47284 * 60.00524 * 19 17 16 39 39 H 1.08997 * 109.39646 * 281.75601 * 21 20 19 40 40 H 1.09000 * 109.39990 * 41.47924 * 21 20 19 41 41 H 1.08997 * 109.60170 * 168.91909 * 22 21 20 42 42 H 1.09006 * 109.60055 * 289.40507 * 22 21 20 43 43 H 1.08995 * 109.41727 * 169.70300 * 24 23 22 44 44 H 1.09003 * 109.41747 * 289.57345 * 24 23 22 45 45 H 1.09000 * 110.30114 * 205.04742 * 27 14 13 46 46 H 1.09001 * 110.29857 * 82.90172 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.6825 -3.8162 -0.0015 11 6 0.3429 -4.0918 -0.6806 12 6 -0.0896 -2.7931 -0.0011 13 6 -0.3866 -5.3571 -0.2030 14 6 -1.2302 -5.7343 -1.4535 15 1 -1.4072 -6.8089 -1.4980 16 7 -2.4936 -4.9932 -1.4817 17 6 -3.5104 -5.4239 -2.2544 18 8 -3.3796 -6.4252 -2.9261 19 6 -4.8102 -4.6619 -2.2830 20 7 -5.7470 -5.3282 -3.1911 21 6 -6.6337 -6.3575 -2.6541 22 6 -7.8040 -6.5895 -3.6123 23 8 -7.2851 -6.7647 -4.9359 24 6 -6.7136 -5.5700 -5.4743 25 6 -5.7613 -4.9663 -4.4800 26 8 -4.9750 -4.1247 -4.8599 27 6 -0.2885 -5.2758 -2.5963 28 8 0.3477 -4.0824 -2.1046 29 1 -0.4850 0.8400 0.0004 30 1 2.5435 -4.0487 -0.6282 31 1 1.7598 -4.2455 0.9974 32 1 -0.4994 -2.9421 0.9978 33 1 -0.7218 -2.1630 -0.6267 34 1 0.3235 -6.1474 0.0406 35 1 -1.0300 -5.1374 0.6490 36 1 -2.5983 -4.1926 -0.9442 37 1 -5.2361 -4.6321 -1.2800 38 1 -4.6277 -3.6451 -2.6306 39 1 -6.0771 -7.2865 -2.5310 40 1 -7.0170 -6.0359 -1.6857 41 1 -8.3505 -7.4836 -3.3123 42 1 -8.4700 -5.7268 -3.5918 43 1 -6.1790 -5.8067 -6.3942 44 1 -7.5069 -4.8542 -5.6902 45 1 -0.8644 -5.0545 -3.4950 46 1 0.4567 -6.0439 -2.8033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053830912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:23 Heat of formation + Delta-G solvation = -103.836753 kcal Electronic energy + Delta-G solvation = -30411.995957 eV Core-core repulsion = 26110.583471 eV Total energy + Delta-G solvation = -4301.412485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02797 -41.54280 -40.17141 -38.74216 -37.91710 -36.40848 -35.46677 -34.18669 -32.21903 -31.25004 -30.34599 -29.64017 -27.42083 -27.02395 -26.50799 -24.87570 -23.94701 -22.80856 -21.70859 -20.58899 -20.13284 -18.78928 -18.76480 -18.55750 -18.27344 -17.58861 -17.06219 -16.91480 -16.58870 -16.49968 -16.16412 -15.90421 -15.78110 -15.65719 -15.21695 -14.99614 -14.75176 -14.60515 -14.49156 -14.31821 -13.87458 -13.64622 -13.25180 -13.15111 -13.00997 -12.86125 -12.78157 -12.67127 -12.57186 -12.27458 -12.23786 -11.96926 -11.64911 -11.57301 -11.37322 -11.20414 -10.95074 -10.53059 -10.43825 -9.99280 -9.89371 -8.91847 -7.91399 -5.22695 1.25397 1.42745 1.45186 1.50649 1.54632 1.63604 2.24435 2.45857 2.78629 2.79570 3.26924 3.28836 3.34765 3.59381 3.64026 3.71886 3.76642 3.81369 3.99753 4.02344 4.18180 4.21161 4.30273 4.32926 4.40756 4.47372 4.62778 4.65863 4.73626 4.74641 4.75476 4.87201 4.90019 4.90415 5.00712 5.09790 5.15918 5.27470 5.42646 5.50297 5.78289 5.93693 6.21802 6.32720 6.42848 6.88061 6.91449 7.11753 7.59521 8.60227 9.26537 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002628 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.938721 B =10650.817607 C =11549.617787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.642 5.642 10 C 0.109 3.891 11 C 0.071 3.929 12 C 0.153 3.847 13 C -0.124 4.124 14 C 0.122 3.878 15 H 0.120 0.880 16 N -0.709 5.709 17 C 0.500 3.500 18 O -0.572 6.572 19 C 0.087 3.913 20 N -0.586 5.586 21 C 0.073 3.927 22 C 0.041 3.959 23 O -0.385 6.385 24 C 0.060 3.940 25 C 0.478 3.522 26 O -0.589 6.589 27 C 0.035 3.965 28 O -0.374 6.374 29 H 0.248 0.752 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.411 0.589 37 H 0.157 0.843 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.117 0.883 45 H 0.060 0.940 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.986 -18.019 -0.894 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.368 5.368 10 C -0.017 4.017 11 C 0.030 3.970 12 C 0.027 3.973 13 C -0.162 4.162 14 C 0.016 3.984 15 H 0.138 0.862 16 N -0.361 5.361 17 C 0.287 3.713 18 O -0.451 6.451 19 C -0.039 4.039 20 N -0.318 5.318 21 C -0.048 4.048 22 C -0.035 4.035 23 O -0.303 6.303 24 C -0.019 4.019 25 C 0.267 3.733 26 O -0.470 6.470 27 C -0.042 4.042 28 O -0.293 6.293 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.247 0.753 37 H 0.175 0.825 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.102 0.898 43 H 0.148 0.852 44 H 0.135 0.865 45 H 0.078 0.922 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.365 -17.996 -1.792 25.775 hybrid contribution 0.827 1.849 0.251 2.041 sum -17.538 -16.147 -1.541 23.889 Atomic orbital electron populations 1.69994 1.06258 1.25398 1.58207 1.25609 0.96711 1.00722 1.03113 0.85006 0.78136 0.79411 0.76762 1.19128 1.22263 1.21325 1.19300 0.90562 0.82989 1.42652 0.90194 1.45758 1.04191 1.00570 1.86249 1.22946 0.96187 0.84376 0.98146 1.23159 0.97026 0.95669 0.81113 1.22392 0.87830 0.90866 0.96206 1.23188 0.99033 0.96522 0.97482 1.22524 0.83262 0.97920 0.94666 0.86209 1.45928 1.12850 1.30444 1.46852 1.21552 0.86519 0.84977 0.78266 1.90672 1.83552 1.27730 1.43117 1.21542 0.87374 0.97014 0.97990 1.47236 1.37178 1.39311 1.08068 1.22543 0.91422 0.90745 1.00090 1.23324 0.93976 1.05882 0.80335 1.88194 1.77587 1.32558 1.31972 1.22800 0.95494 0.88434 0.95186 1.21778 0.85125 0.82187 0.84181 1.90768 1.41980 1.35793 1.78419 1.23985 0.95252 0.87703 0.97301 1.88435 1.79411 1.41873 1.19623 0.94343 0.94098 0.90729 0.93645 0.94695 0.85803 0.87100 0.75259 0.82508 0.87799 0.91388 0.85793 0.83794 0.89822 0.85247 0.86495 0.92174 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.41 11.51 21.65 0.25 -58.16 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 7 C -0.23 -13.32 10.74 84.03 0.90 -12.42 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 9 N -0.64 -34.14 3.79 -738.58 -2.80 -36.94 16 10 C 0.11 4.41 8.20 83.39 0.68 5.10 16 11 C 0.07 2.62 1.75 -10.73 -0.02 2.60 16 12 C 0.15 7.09 6.87 83.42 0.57 7.66 16 13 C -0.12 -2.92 5.97 31.67 0.19 -2.73 16 14 C 0.12 3.06 3.37 46.54 0.16 3.22 16 15 H 0.12 2.69 7.74 -2.39 -0.02 2.68 16 16 N -0.71 -17.77 5.24 -435.24 -2.28 -20.05 16 17 C 0.50 13.30 7.89 87.65 0.69 14.00 16 18 O -0.57 -19.08 16.18 -3.05 -0.05 -19.13 16 19 C 0.09 1.77 5.77 85.63 0.49 2.26 16 20 N -0.59 -11.77 2.32 -828.97 -1.92 -13.69 16 21 C 0.07 0.82 6.67 86.47 0.58 1.40 16 22 C 0.04 0.33 6.89 71.99 0.50 0.83 16 23 O -0.38 -6.14 10.86 -148.98 -1.62 -7.76 16 24 C 0.06 1.04 6.98 71.12 0.50 1.53 16 25 C 0.48 12.08 7.58 87.68 0.66 12.75 16 26 O -0.59 -20.83 16.38 -3.03 -0.05 -20.88 16 27 C 0.04 1.12 7.49 72.67 0.54 1.67 16 28 O -0.37 -15.63 11.17 -148.98 -1.66 -17.29 16 29 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 32 H 0.05 1.98 7.95 -2.39 -0.02 1.96 16 33 H 0.03 1.89 7.15 -2.39 -0.02 1.88 16 34 H 0.12 2.22 8.13 -2.39 -0.02 2.20 16 35 H 0.11 2.22 7.82 -2.39 -0.02 2.20 16 36 H 0.41 9.76 8.62 -92.71 -0.80 8.96 16 37 H 0.16 1.61 7.93 -2.38 -0.02 1.59 16 38 H 0.10 2.52 7.28 -2.39 -0.02 2.51 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 0.47 7.99 -2.39 -0.02 0.45 16 41 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 0.39 8.10 -2.38 -0.02 0.38 16 43 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -90.44 379.98 -0.98 -91.42 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.21 Total: 18.78 kcal Atomic # 6 Polarization: 27.36 SS G_CDS: 6.92 Total: 34.28 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -6.75 Total: -128.84 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -3.38 Total: -65.06 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -90.44 -0.98 -91.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053830912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.414 kcal (2) G-P(sol) polarization free energy of solvation -90.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds