Wall clock time and date at job start Sat Apr 11 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86808 * 119.99951 * 2 1 4 4 H 1.48504 * 109.46986 * 354.94318 * 3 2 1 5 5 H 1.48489 * 109.47489 * 114.94391 * 3 2 1 6 6 H 1.48498 * 109.46982 * 234.94977 * 3 2 1 7 7 C 1.38805 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00280 * 354.47849 * 7 2 1 9 9 N 1.36939 * 119.99984 * 174.47539 * 7 2 1 10 10 C 1.47208 * 135.97182 * 7.18398 * 9 7 2 11 11 C 1.52983 * 87.69297 * 153.61730 * 10 9 7 12 12 C 1.47218 * 135.97234 * 187.55519 * 9 7 2 13 13 C 1.53653 * 115.11768 * 140.89689 * 11 10 9 14 14 C 1.55495 * 101.96737 * 111.48075 * 13 11 10 15 15 H 1.08998 * 111.10318 * 275.54310 * 14 13 11 16 16 N 1.46494 * 111.10371 * 151.43261 * 14 13 11 17 17 C 1.34783 * 119.99761 * 161.88498 * 16 14 13 18 18 O 1.21282 * 119.99852 * 0.02562 * 17 16 14 19 19 C 1.50694 * 119.99926 * 179.97438 * 17 16 14 20 20 N 1.46513 * 109.47129 * 180.02562 * 19 17 16 21 21 C 1.46086 * 118.73028 * 89.99853 * 20 19 17 22 22 C 1.53013 * 109.92596 * 161.62118 * 21 20 19 23 23 O 1.43250 * 108.66811 * 49.16108 * 22 21 20 24 24 C 1.42965 * 112.98850 * 291.63589 * 23 22 21 25 25 C 1.33869 * 118.72737 * 269.73223 * 20 19 17 26 26 O 1.21288 * 118.83048 * 1.90427 * 25 20 19 27 27 C 1.55009 * 101.04255 * 33.48687 * 14 13 11 28 28 O 1.42390 * 116.32044 * 269.47794 * 11 10 9 29 29 H 0.96996 * 119.99869 * 174.91209 * 1 2 3 30 30 H 1.09003 * 113.50359 * 268.29943 * 10 9 7 31 31 H 1.09000 * 113.50322 * 38.83979 * 10 9 7 32 32 H 1.08993 * 113.49746 * 321.16832 * 12 9 7 33 33 H 1.09000 * 113.49815 * 91.64126 * 12 9 7 34 34 H 1.09000 * 110.93301 * 229.64752 * 13 11 10 35 35 H 1.09002 * 110.93584 * 353.31360 * 13 11 10 36 36 H 0.96997 * 120.00732 * 341.88488 * 16 14 13 37 37 H 1.09000 * 109.47622 * 299.99605 * 19 17 16 38 38 H 1.08992 * 109.47382 * 60.00500 * 19 17 16 39 39 H 1.09005 * 109.39702 * 281.76272 * 21 20 19 40 40 H 1.08999 * 109.39453 * 41.48133 * 21 20 19 41 41 H 1.09001 * 109.60865 * 168.91811 * 22 21 20 42 42 H 1.09000 * 109.60491 * 289.41026 * 22 21 20 43 43 H 1.09004 * 109.41417 * 169.69956 * 24 23 22 44 44 H 1.08995 * 109.41834 * 289.56502 * 24 23 22 45 45 H 1.09003 * 110.30456 * 205.04562 * 27 14 13 46 46 H 1.09002 * 110.38170 * 82.94550 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2899 2.7438 -0.1234 5 1 3.0091 1.7514 1.2693 6 1 3.1940 1.6444 -1.1462 7 6 2.0103 -1.2021 0.0005 8 1 1.4741 -2.1352 0.0909 9 7 3.3749 -1.2049 -0.1136 10 6 4.4382 -0.1869 -0.1238 11 6 5.3902 -1.2652 0.3970 12 6 4.4205 -2.2266 -0.2865 13 6 6.8061 -1.2282 -0.1986 14 6 7.6598 -0.7927 1.0259 15 1 7.6622 0.2916 1.1370 16 7 9.0255 -1.3137 0.9289 17 6 10.0092 -0.7682 1.6716 18 8 9.7634 0.1535 2.4205 19 6 11.4139 -1.3045 1.5722 20 7 12.2897 -0.5494 2.4720 21 6 12.4587 -1.0189 3.8450 22 6 13.7156 -0.3975 4.4576 23 8 13.6900 1.0153 4.2224 24 6 13.8523 1.3547 2.8432 25 6 12.9083 0.5410 2.0025 26 8 12.6963 0.8873 0.8596 27 6 6.8846 -1.4708 2.1845 28 8 5.4973 -1.3828 1.8120 29 1 -0.4850 -0.8367 -0.0745 30 1 4.6897 0.1690 -1.1230 31 1 4.2697 0.6248 0.5838 32 1 4.2369 -3.1372 0.2837 33 1 4.6664 -2.4247 -1.3298 34 1 7.1062 -2.2150 -0.5513 35 1 6.8722 -0.4929 -1.0006 36 1 9.2220 -2.0511 0.3302 37 1 11.4222 -2.3568 1.8564 38 1 11.7703 -1.2020 0.5473 39 1 11.5884 -0.7320 4.4354 40 1 12.5538 -2.1047 3.8471 41 1 13.7328 -0.5894 5.5305 42 1 14.6014 -0.8297 3.9921 43 1 13.6429 2.4154 2.7040 44 1 14.8769 1.1444 2.5364 45 1 7.0597 -0.9383 3.1193 46 1 7.1845 -2.5142 2.2824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053830913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:26 Heat of formation + Delta-G solvation = -65.824293 kcal Electronic energy + Delta-G solvation = -29949.745881 eV Core-core repulsion = 25649.981740 eV Total energy + Delta-G solvation = -4299.764141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33215 -40.44658 -39.34337 -38.12654 -36.70181 -35.77372 -34.68576 -32.33284 -31.36035 -30.66516 -29.50780 -28.35591 -26.45214 -25.69128 -25.46583 -24.41844 -22.33197 -21.22941 -20.95633 -19.56112 -19.32708 -18.24711 -17.89763 -17.63384 -17.41936 -16.62904 -16.34405 -16.03981 -15.93754 -15.37339 -15.17083 -15.10553 -14.85818 -14.21487 -14.02515 -13.91276 -13.82868 -13.75937 -13.49686 -13.41635 -13.09045 -12.62458 -12.59897 -12.26288 -12.12544 -11.88918 -11.73101 -11.63471 -11.09850 -10.96123 -10.83768 -10.46123 -10.40014 -10.27852 -9.94429 -9.71067 -9.29741 -9.24513 -9.08346 -8.87472 -8.76493 -7.12613 -6.23860 -3.17154 1.93632 2.18743 2.30639 2.88314 3.19019 3.46000 3.52092 3.70232 3.76833 3.94966 4.16574 4.22892 4.36860 4.45387 4.53838 4.61288 4.65871 4.68223 4.74163 4.79995 4.83628 4.85378 4.88403 5.04403 5.08092 5.14129 5.24468 5.53054 5.58693 5.64232 5.69497 5.81415 5.85092 6.11789 6.16306 6.20335 6.22164 6.32136 6.40568 6.46789 6.77290 7.14298 7.14953 7.45411 7.53321 7.90936 8.28665 9.02865 9.55056 10.40321 11.26464 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025050 B = 0.002241 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.513907 B =12491.552731 C =12775.582093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.025 4.025 3 Si 1.068 2.932 4 H -0.295 1.295 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.299 4.299 8 H 0.083 0.917 9 N -0.621 5.621 10 C 0.091 3.909 11 C 0.071 3.929 12 C 0.118 3.882 13 C -0.143 4.143 14 C 0.112 3.888 15 H 0.106 0.894 16 N -0.717 5.717 17 C 0.497 3.503 18 O -0.523 6.523 19 C 0.091 3.909 20 N -0.588 5.588 21 C 0.078 3.922 22 C 0.045 3.955 23 O -0.367 6.367 24 C 0.053 3.947 25 C 0.493 3.507 26 O -0.536 6.536 27 C 0.041 3.959 28 O -0.333 6.333 29 H 0.260 0.740 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.133 0.867 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.409 -6.479 5.574 35.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.224 4.224 3 Si 0.901 3.099 4 H -0.222 1.222 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.425 4.425 8 H 0.101 0.899 9 N -0.348 5.348 10 C -0.035 4.035 11 C 0.029 3.971 12 C -0.009 4.009 13 C -0.182 4.182 14 C 0.007 3.993 15 H 0.124 0.876 16 N -0.370 5.370 17 C 0.282 3.718 18 O -0.398 6.398 19 C -0.035 4.035 20 N -0.321 5.321 21 C -0.045 4.045 22 C -0.032 4.032 23 O -0.285 6.285 24 C -0.026 4.026 25 C 0.281 3.719 26 O -0.413 6.413 27 C -0.037 4.037 28 O -0.250 6.250 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.237 0.763 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.151 0.849 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 33.437 -3.824 5.938 34.175 hybrid contribution 0.315 -2.418 -0.707 2.538 sum 33.752 -6.242 5.231 34.720 Atomic orbital electron populations 1.70918 1.05364 1.29094 1.52396 1.25704 0.96465 1.00960 0.99226 0.83749 0.73844 0.76037 0.76304 1.22202 1.21834 1.21495 1.20121 0.77821 0.95856 1.48707 0.89935 1.45831 1.01415 1.01874 1.85725 1.23146 0.87670 0.94353 0.98321 1.23158 0.92073 1.00106 0.81767 1.22629 0.87291 0.94151 0.96837 1.23164 0.94394 1.02990 0.97675 1.22747 0.80450 1.00369 0.95724 0.87606 1.45836 1.08140 1.37878 1.45180 1.21132 0.87143 0.83291 0.80269 1.90752 1.83245 1.28008 1.37790 1.21378 0.87828 0.96413 0.97921 1.47029 1.45172 1.27506 1.12373 1.22272 1.00395 0.99933 0.81885 1.23021 0.95982 0.81507 1.02701 1.88241 1.93854 1.22695 1.23688 1.22821 0.98014 1.01153 0.80602 1.21050 0.81641 0.80648 0.88556 1.90766 1.63592 1.67797 1.19155 1.23788 0.82079 0.99712 0.98108 1.88489 1.22536 1.93817 1.20164 0.93010 0.92555 0.92092 0.93048 0.93364 0.89649 0.88921 0.76297 0.87117 0.86418 0.89880 0.89380 0.86391 0.91738 0.84930 0.89087 0.89484 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.49 13.70 55.49 0.76 -29.73 16 2 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 3 Si 1.07 28.11 25.17 -169.99 -4.28 23.83 16 4 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 5 H -0.29 -7.44 6.49 56.52 0.37 -7.07 16 6 H -0.29 -6.95 6.19 56.52 0.35 -6.60 16 7 C -0.30 -9.01 11.08 -15.06 -0.17 -9.17 16 8 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.62 -16.03 3.70 -184.58 -0.68 -16.71 16 10 C 0.09 2.01 5.17 -7.92 -0.04 1.97 16 11 C 0.07 1.27 1.75 -90.45 -0.16 1.11 16 12 C 0.12 2.36 8.20 -8.06 -0.07 2.30 16 13 C -0.14 -1.78 6.03 -25.07 -0.15 -1.93 16 14 C 0.11 1.40 3.37 -65.55 -0.22 1.18 16 15 H 0.11 1.56 7.74 -51.93 -0.40 1.16 16 16 N -0.72 -6.51 5.24 -51.51 -0.27 -6.78 16 17 C 0.50 5.31 7.89 -10.99 -0.09 5.22 16 18 O -0.52 -8.03 16.18 5.56 0.09 -7.94 16 19 C 0.09 0.63 5.77 -5.19 -0.03 0.60 16 20 N -0.59 -4.74 2.32 -175.79 -0.41 -5.14 16 21 C 0.08 0.40 6.67 -4.26 -0.03 0.37 16 22 C 0.05 0.18 6.89 37.16 0.26 0.44 16 23 O -0.37 -2.74 10.86 -35.23 -0.38 -3.13 16 24 C 0.05 0.38 6.98 35.83 0.25 0.63 16 25 C 0.49 4.96 7.58 -11.57 -0.09 4.87 16 26 O -0.54 -7.32 16.38 5.55 0.09 -7.23 16 27 C 0.04 0.58 7.49 38.22 0.29 0.87 16 28 O -0.33 -6.40 11.18 -35.23 -0.39 -6.80 16 29 H 0.26 8.34 8.73 -40.82 -0.36 7.98 16 30 H 0.06 1.16 7.42 -51.93 -0.39 0.77 16 31 H 0.06 1.45 4.78 -51.93 -0.25 1.20 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 34 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 35 H 0.09 1.09 7.81 -51.93 -0.41 0.68 16 36 H 0.40 2.25 8.51 -40.82 -0.35 1.90 16 37 H 0.11 0.33 7.93 -51.93 -0.41 -0.08 16 38 H 0.12 0.81 7.28 -51.93 -0.38 0.43 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.18 7.99 -51.93 -0.41 -0.23 16 41 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.06 0.15 8.10 -51.93 -0.42 -0.27 16 43 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -41.69 372.33 -7.07 -48.76 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.87 Total: -2.31 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -0.34 Total: 7.58 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.60 Total: -58.37 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.60 Total: -25.10 kcal Atomic # 14 Polarization: 28.11 SS G_CDS: -4.28 Total: 23.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -41.69 -7.07 -48.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053830913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.061 kcal (2) G-P(sol) polarization free energy of solvation -41.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds