Wall clock time and date at job start Sat Apr 11 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86808 * 119.99951 * 2 1 4 4 H 1.48504 * 109.46986 * 354.94318 * 3 2 1 5 5 H 1.48489 * 109.47489 * 114.94391 * 3 2 1 6 6 H 1.48498 * 109.46982 * 234.94977 * 3 2 1 7 7 C 1.38805 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00280 * 354.47849 * 7 2 1 9 9 N 1.36939 * 119.99984 * 174.47539 * 7 2 1 10 10 C 1.47208 * 135.97182 * 7.18398 * 9 7 2 11 11 C 1.52983 * 87.69297 * 153.61730 * 10 9 7 12 12 C 1.47218 * 135.97234 * 187.55519 * 9 7 2 13 13 C 1.53653 * 115.11768 * 140.89689 * 11 10 9 14 14 C 1.55495 * 101.96737 * 111.48075 * 13 11 10 15 15 H 1.08998 * 111.10318 * 275.54310 * 14 13 11 16 16 N 1.46494 * 111.10371 * 151.43261 * 14 13 11 17 17 C 1.34783 * 119.99761 * 161.88498 * 16 14 13 18 18 O 1.21282 * 119.99852 * 0.02562 * 17 16 14 19 19 C 1.50694 * 119.99926 * 179.97438 * 17 16 14 20 20 N 1.46513 * 109.47129 * 180.02562 * 19 17 16 21 21 C 1.46086 * 118.73028 * 89.99853 * 20 19 17 22 22 C 1.53013 * 109.92596 * 161.62118 * 21 20 19 23 23 O 1.43250 * 108.66811 * 49.16108 * 22 21 20 24 24 C 1.42965 * 112.98850 * 291.63589 * 23 22 21 25 25 C 1.33869 * 118.72737 * 269.73223 * 20 19 17 26 26 O 1.21288 * 118.83048 * 1.90427 * 25 20 19 27 27 C 1.55009 * 101.04255 * 33.48687 * 14 13 11 28 28 O 1.42390 * 116.32044 * 269.47794 * 11 10 9 29 29 H 0.96996 * 119.99869 * 174.91209 * 1 2 3 30 30 H 1.09003 * 113.50359 * 268.29943 * 10 9 7 31 31 H 1.09000 * 113.50322 * 38.83979 * 10 9 7 32 32 H 1.08993 * 113.49746 * 321.16832 * 12 9 7 33 33 H 1.09000 * 113.49815 * 91.64126 * 12 9 7 34 34 H 1.09000 * 110.93301 * 229.64752 * 13 11 10 35 35 H 1.09002 * 110.93584 * 353.31360 * 13 11 10 36 36 H 0.96997 * 120.00732 * 341.88488 * 16 14 13 37 37 H 1.09000 * 109.47622 * 299.99605 * 19 17 16 38 38 H 1.08992 * 109.47382 * 60.00500 * 19 17 16 39 39 H 1.09005 * 109.39702 * 281.76272 * 21 20 19 40 40 H 1.08999 * 109.39453 * 41.48133 * 21 20 19 41 41 H 1.09001 * 109.60865 * 168.91811 * 22 21 20 42 42 H 1.09000 * 109.60491 * 289.41026 * 22 21 20 43 43 H 1.09004 * 109.41417 * 169.69956 * 24 23 22 44 44 H 1.08995 * 109.41834 * 289.56502 * 24 23 22 45 45 H 1.09003 * 110.30456 * 205.04562 * 27 14 13 46 46 H 1.09002 * 110.38170 * 82.94550 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2899 2.7438 -0.1234 5 1 3.0091 1.7514 1.2693 6 1 3.1940 1.6444 -1.1462 7 6 2.0103 -1.2021 0.0005 8 1 1.4741 -2.1352 0.0909 9 7 3.3749 -1.2049 -0.1136 10 6 4.4382 -0.1869 -0.1238 11 6 5.3902 -1.2652 0.3970 12 6 4.4205 -2.2266 -0.2865 13 6 6.8061 -1.2282 -0.1986 14 6 7.6598 -0.7927 1.0259 15 1 7.6622 0.2916 1.1370 16 7 9.0255 -1.3137 0.9289 17 6 10.0092 -0.7682 1.6716 18 8 9.7634 0.1535 2.4205 19 6 11.4139 -1.3045 1.5722 20 7 12.2897 -0.5494 2.4720 21 6 12.4587 -1.0189 3.8450 22 6 13.7156 -0.3975 4.4576 23 8 13.6900 1.0153 4.2224 24 6 13.8523 1.3547 2.8432 25 6 12.9083 0.5410 2.0025 26 8 12.6963 0.8873 0.8596 27 6 6.8846 -1.4708 2.1845 28 8 5.4973 -1.3828 1.8120 29 1 -0.4850 -0.8367 -0.0745 30 1 4.6897 0.1690 -1.1230 31 1 4.2697 0.6248 0.5838 32 1 4.2369 -3.1372 0.2837 33 1 4.6664 -2.4247 -1.3298 34 1 7.1062 -2.2150 -0.5513 35 1 6.8722 -0.4929 -1.0006 36 1 9.2220 -2.0511 0.3302 37 1 11.4222 -2.3568 1.8564 38 1 11.7703 -1.2020 0.5473 39 1 11.5884 -0.7320 4.4354 40 1 12.5538 -2.1047 3.8471 41 1 13.7328 -0.5894 5.5305 42 1 14.6014 -0.8297 3.9921 43 1 13.6429 2.4154 2.7040 44 1 14.8769 1.1444 2.5364 45 1 7.0597 -0.9383 3.1193 46 1 7.1845 -2.5142 2.2824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053830913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:25 Heat of formation + Delta-G solvation = -102.399832 kcal Electronic energy + Delta-G solvation = -29951.331915 eV Core-core repulsion = 25649.981740 eV Total energy + Delta-G solvation = -4301.350176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02890 -41.65197 -40.31790 -38.73569 -38.17615 -36.42455 -35.72653 -34.56035 -32.28179 -31.28702 -30.52674 -29.61729 -27.35030 -27.14907 -26.96638 -24.87187 -23.60256 -22.71128 -21.92752 -20.83812 -20.14704 -19.62673 -18.78271 -18.61001 -18.26396 -17.70543 -17.50880 -16.90314 -16.59964 -16.48417 -16.12944 -16.02682 -15.81568 -15.63107 -15.35519 -15.29877 -15.02164 -14.84259 -14.51526 -14.43575 -14.04681 -13.89452 -13.55092 -13.37762 -13.11127 -12.77894 -12.72328 -12.68700 -12.40494 -12.31263 -12.25381 -11.78041 -11.64219 -11.43470 -11.33456 -11.22044 -11.07619 -10.51968 -10.38006 -10.16929 -9.89678 -9.25953 -8.64496 -5.49046 1.24362 1.33267 1.43737 1.51925 1.62577 1.65137 2.11464 2.49746 2.67904 2.80798 2.97572 3.16330 3.28553 3.32360 3.43409 3.63077 3.72551 3.80931 3.98382 4.02722 4.07850 4.20291 4.21247 4.33746 4.41473 4.47629 4.49553 4.53649 4.59875 4.61939 4.70875 4.73720 4.75219 4.84336 4.87434 4.88688 4.95163 5.11972 5.18573 5.34645 5.80004 5.91828 6.13457 6.20826 6.45906 6.67140 6.87720 7.17959 7.29640 8.24091 8.87739 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025050 B = 0.002241 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.513907 B =12491.552731 C =12775.582093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.087 4.087 3 Si 1.107 2.893 4 H -0.302 1.302 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.285 4.285 8 H 0.051 0.949 9 N -0.660 5.660 10 C 0.076 3.924 11 C 0.087 3.913 12 C 0.117 3.883 13 C -0.125 4.125 14 C 0.122 3.878 15 H 0.079 0.921 16 N -0.698 5.698 17 C 0.493 3.507 18 O -0.578 6.578 19 C 0.092 3.908 20 N -0.588 5.588 21 C 0.074 3.926 22 C 0.040 3.960 23 O -0.390 6.390 24 C 0.055 3.945 25 C 0.482 3.518 26 O -0.583 6.583 27 C 0.040 3.960 28 O -0.373 6.373 29 H 0.246 0.754 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.424 0.576 37 H 0.161 0.839 38 H 0.122 0.878 39 H 0.060 0.940 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.778 -8.200 4.943 39.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.279 4.279 3 Si 0.934 3.066 4 H -0.230 1.230 5 H -0.215 1.215 6 H -0.176 1.176 7 C -0.413 4.413 8 H 0.069 0.931 9 N -0.389 5.389 10 C -0.048 4.048 11 C 0.045 3.955 12 C -0.008 4.008 13 C -0.164 4.164 14 C 0.016 3.984 15 H 0.097 0.903 16 N -0.353 5.353 17 C 0.280 3.720 18 O -0.456 6.456 19 C -0.034 4.034 20 N -0.320 5.320 21 C -0.048 4.048 22 C -0.036 4.036 23 O -0.308 6.308 24 C -0.024 4.024 25 C 0.272 3.728 26 O -0.464 6.464 27 C -0.037 4.037 28 O -0.291 6.291 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.126 0.874 36 H 0.263 0.737 37 H 0.178 0.822 38 H 0.140 0.860 39 H 0.078 0.922 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.106 0.894 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.093 0.907 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 37.883 -5.642 5.300 38.666 hybrid contribution -1.012 -2.040 -0.396 2.311 sum 36.871 -7.682 4.904 37.981 Atomic orbital electron populations 1.71009 1.06608 1.28350 1.55777 1.26980 0.96593 1.04440 0.99842 0.83273 0.73333 0.72240 0.77753 1.22965 1.21538 1.17631 1.19996 0.80586 0.94475 1.46229 0.93120 1.45974 1.00815 1.05670 1.86421 1.23472 0.87709 0.94349 0.99301 1.22852 0.94434 0.96525 0.81658 1.22924 0.85755 0.93256 0.98875 1.23113 0.89999 1.05950 0.97325 1.22372 0.82075 0.98871 0.95090 0.90327 1.45611 1.06434 1.38108 1.45121 1.21890 0.88611 0.82376 0.79156 1.90742 1.84211 1.30470 1.40193 1.21617 0.84896 0.98493 0.98370 1.47233 1.44270 1.26950 1.13539 1.22501 0.99990 1.02280 0.80046 1.23310 0.96351 0.79779 1.04169 1.88213 1.94028 1.25006 1.23553 1.22835 0.98759 1.00445 0.80336 1.21609 0.81932 0.81036 0.88271 1.90729 1.65443 1.69111 1.21095 1.23951 0.80167 1.01394 0.98228 1.88449 1.25795 1.93758 1.21097 0.94456 0.90082 0.94241 0.93594 0.89751 0.85457 0.87367 0.73672 0.82164 0.85983 0.92151 0.85427 0.84424 0.89427 0.85531 0.86331 0.90734 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.79 13.70 21.65 0.30 -65.49 16 2 C -0.09 -5.52 5.50 84.86 0.47 -5.06 16 3 Si 1.11 57.58 25.17 68.60 1.73 59.30 16 4 H -0.30 -15.85 7.11 99.48 0.71 -15.15 16 5 H -0.29 -14.62 6.49 99.48 0.65 -13.98 16 6 H -0.25 -11.41 6.19 99.48 0.62 -10.80 16 7 C -0.29 -17.61 11.08 84.03 0.93 -16.68 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 9 N -0.66 -33.69 3.70 -738.94 -2.73 -36.42 16 10 C 0.08 3.23 5.17 83.48 0.43 3.66 16 11 C 0.09 2.90 1.75 -10.68 -0.02 2.88 16 12 C 0.12 4.41 8.20 83.39 0.68 5.09 16 13 C -0.13 -2.54 6.03 31.67 0.19 -2.35 16 14 C 0.12 2.70 3.37 46.54 0.16 2.86 16 15 H 0.08 2.22 7.74 -2.39 -0.02 2.20 16 16 N -0.70 -10.06 5.24 -435.25 -2.28 -12.34 16 17 C 0.49 9.32 7.89 87.65 0.69 10.01 16 18 O -0.58 -17.41 16.18 -3.04 -0.05 -17.46 16 19 C 0.09 0.96 5.77 85.63 0.49 1.46 16 20 N -0.59 -8.09 2.32 -828.99 -1.92 -10.02 16 21 C 0.07 0.54 6.67 86.46 0.58 1.12 16 22 C 0.04 0.21 6.89 71.99 0.50 0.71 16 23 O -0.39 -5.27 10.86 -148.98 -1.62 -6.89 16 24 C 0.06 0.73 6.98 71.12 0.50 1.22 16 25 C 0.48 9.16 7.58 87.68 0.66 9.82 16 26 O -0.58 -15.68 16.38 -3.06 -0.05 -15.73 16 27 C 0.04 1.05 7.49 72.67 0.54 1.59 16 28 O -0.37 -13.87 11.18 -148.98 -1.67 -15.53 16 29 H 0.25 16.66 8.73 -92.71 -0.81 15.85 16 30 H 0.08 3.03 7.42 -2.39 -0.02 3.02 16 31 H 0.04 1.84 4.78 -2.39 -0.01 1.83 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.64 8.13 -2.39 -0.02 2.62 16 34 H 0.13 1.59 7.96 -2.39 -0.02 1.57 16 35 H 0.11 1.97 7.81 -2.39 -0.02 1.95 16 36 H 0.42 2.45 8.51 -92.71 -0.79 1.66 16 37 H 0.16 0.04 7.93 -2.39 -0.02 0.02 16 38 H 0.12 1.27 7.28 -2.39 -0.02 1.25 16 39 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.13 -0.08 7.99 -2.39 -0.02 -0.10 16 41 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.09 0.08 8.10 -2.39 -0.02 0.07 16 43 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -98.40 372.33 -1.46 -99.86 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 0.03 Total: 4.37 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 6.81 Total: 16.35 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -6.64 Total: -124.27 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -3.38 Total: -55.61 kcal Atomic # 14 Polarization: 57.58 SS G_CDS: 1.73 Total: 59.30 kcal Total: -98.40 -1.46 -99.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053830913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.541 kcal (2) G-P(sol) polarization free energy of solvation -98.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds