Wall clock time and date at job start Sat Apr 11 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.54520 * 2 1 4 4 C 1.54235 * 110.60357 * 122.84740 * 2 1 3 5 5 C 1.51306 * 103.55622 * 118.51532 * 4 2 1 6 6 O 1.21232 * 125.39961 * 179.97438 * 5 4 2 7 7 N 1.33878 * 109.20776 * 359.97438 * 5 4 2 8 8 C 1.46498 * 122.76288 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47423 * 90.02228 * 8 7 5 10 10 O 1.21282 * 119.99800 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00408 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00089 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.88773 * 37.42881 * 12 11 9 14 14 C 1.54912 * 111.00412 * 273.54867 * 12 11 9 15 15 N 1.47424 * 104.93008 * 204.85953 * 14 12 11 16 16 C 1.36935 * 125.65133 * 204.15523 * 15 14 12 17 17 H 1.08000 * 119.99782 * 354.83049 * 16 15 14 18 18 C 1.38813 * 119.99748 * 174.82743 * 16 15 14 19 19 N 1.31620 * 120.00341 * 7.02995 * 18 16 15 20 20 Si 1.86808 * 119.99539 * 187.02565 * 18 16 15 21 21 H 1.48502 * 109.46896 * 94.99260 * 20 18 16 22 22 H 1.48501 * 109.46951 * 214.98619 * 20 18 16 23 23 H 1.48492 * 109.47136 * 334.98799 * 20 18 16 24 24 C 1.47292 * 108.55382 * 24.15734 * 15 14 12 25 25 C 1.54318 * 107.31103 * 358.92245 * 24 15 14 26 26 H 1.08999 * 110.72000 * 96.17802 * 25 24 15 27 27 O 1.42900 * 110.72507 * 219.45465 * 25 24 15 28 28 C 1.33871 * 114.47757 * 0.26825 * 7 5 4 29 29 O 1.21222 * 125.40270 * 179.70752 * 28 7 5 30 30 H 1.09007 * 109.47054 * 297.15844 * 1 2 3 31 31 H 1.08999 * 109.46912 * 57.15306 * 1 2 3 32 32 H 1.08999 * 109.47172 * 177.15552 * 1 2 3 33 33 H 1.08999 * 109.47309 * 182.84567 * 3 2 1 34 34 H 1.08997 * 109.46793 * 302.84364 * 3 2 1 35 35 H 1.09005 * 109.47256 * 62.84515 * 3 2 1 36 36 H 1.09001 * 110.60611 * 359.97438 * 4 2 1 37 37 H 1.09005 * 110.60396 * 237.03162 * 4 2 1 38 38 H 1.09001 * 109.47121 * 330.02436 * 8 7 5 39 39 H 1.09000 * 109.47261 * 210.02943 * 8 7 5 40 40 H 0.97002 * 119.99689 * 0.02562 * 11 9 8 41 41 H 1.08992 * 110.36450 * 323.75622 * 14 12 11 42 42 H 1.09001 * 110.36555 * 85.96934 * 14 12 11 43 43 H 0.96997 * 119.99818 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.85433 * 239.49866 * 24 15 14 45 45 H 1.09001 * 110.00331 * 118.43573 * 24 15 14 46 46 H 0.96695 * 114.00031 * 293.52652 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0669 1.4327 0.0000 4 6 2.0727 -0.7831 1.2129 5 6 2.8548 -1.9149 0.5831 6 8 3.4528 -2.7779 1.1894 7 7 2.7820 -1.8125 -0.7497 8 6 3.4360 -2.7609 -1.6547 9 6 2.4914 -3.8936 -1.9636 10 8 1.3809 -3.9072 -1.4763 11 7 2.8802 -4.8912 -2.7824 12 6 1.9616 -5.9920 -3.0831 13 1 0.9381 -5.6293 -3.1781 14 6 2.0588 -7.1052 -2.0101 15 7 1.6119 -8.3322 -2.6942 16 6 1.0891 -9.4410 -2.0839 17 1 1.0528 -9.4974 -1.0060 18 6 0.6057 -10.4923 -2.8508 19 7 0.7742 -10.4867 -4.1561 20 14 -0.2838 -11.9152 -2.0299 21 1 -1.7486 -11.6751 -2.0747 22 1 0.0331 -13.1766 -2.7465 23 1 0.1568 -12.0249 -0.6161 24 6 1.8222 -8.1646 -4.1424 25 6 2.4040 -6.7521 -4.3614 26 1 3.4911 -6.7894 -4.4310 27 8 1.8416 -6.1489 -5.5284 28 6 2.0665 -0.7692 -1.1876 29 8 1.8766 -0.4865 -2.3510 30 1 -0.3633 0.4691 0.9144 31 1 -0.3633 0.5574 -0.8634 32 1 -0.3633 -1.0264 -0.0510 33 1 3.1555 1.4127 -0.0510 34 1 1.6725 1.9684 -0.8634 35 1 1.7552 1.9375 0.9144 36 1 1.2527 -1.1722 1.8164 37 1 2.7275 -0.1527 1.8147 38 1 4.3340 -3.1560 -1.1797 39 1 3.7081 -2.2521 -2.5795 40 1 3.7682 -4.8802 -3.1724 41 1 3.0882 -7.2144 -1.6691 42 1 1.4031 -6.8796 -1.1690 43 1 0.4368 -11.2215 -4.6918 44 1 0.8720 -8.2597 -4.6680 45 1 2.5238 -8.9151 -4.5066 46 1 2.0876 -6.5866 -6.3548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076995915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:44 Heat of formation + Delta-G solvation = -114.460946 kcal Electronic energy + Delta-G solvation = -30398.318763 eV Core-core repulsion = 26096.445578 eV Total energy + Delta-G solvation = -4301.873185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -42.42536 -39.66038 -38.85211 -37.87252 -36.45232 -35.40485 -35.06384 -34.11553 -31.82090 -30.26751 -28.55281 -27.88878 -27.68681 -26.69976 -24.63974 -24.23742 -21.91379 -20.92635 -20.52762 -20.17365 -19.45674 -17.86183 -17.54891 -16.97267 -16.79156 -16.57193 -16.14132 -15.75165 -15.37338 -14.98894 -14.64637 -14.56795 -14.47761 -14.17587 -14.08588 -14.00317 -13.64644 -13.17405 -12.91636 -12.79203 -12.70035 -12.66331 -12.28179 -12.15274 -12.06422 -11.92952 -11.54867 -11.50562 -11.27217 -10.91708 -10.81936 -10.70314 -10.56800 -10.19867 -10.15680 -9.93076 -9.87060 -9.68324 -9.31396 -8.91001 -8.63351 -6.92251 -5.78574 -3.11574 1.29452 2.04227 2.46308 2.61886 3.26151 3.39797 3.45203 3.46710 3.62105 3.85307 3.96760 4.29153 4.42090 4.59450 4.61479 4.65322 4.74440 4.89847 5.01055 5.08486 5.09987 5.16332 5.18638 5.25917 5.37245 5.40820 5.45391 5.54999 5.62599 5.64015 5.79028 5.80270 6.05097 6.10024 6.46207 6.51159 6.61202 6.83210 7.06200 7.27688 7.45426 7.47147 7.58837 7.72584 8.08931 8.15242 8.25015 9.13579 9.74043 10.37679 11.33970 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.002648 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.506005 B =10573.194810 C =11242.549837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.149 4.149 5 C 0.532 3.468 6 O -0.477 6.477 7 N -0.557 5.557 8 C 0.077 3.923 9 C 0.502 3.498 10 O -0.528 6.528 11 N -0.709 5.709 12 C 0.140 3.860 13 H 0.102 0.898 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.229 4.229 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.152 3.848 25 C 0.069 3.931 26 H 0.059 0.941 27 O -0.563 6.563 28 C 0.539 3.461 29 O -0.473 6.473 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.399 0.601 41 H 0.024 0.976 42 H 0.051 0.949 43 H 0.253 0.747 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 24.124 5.922 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.189 4.189 5 C 0.321 3.679 6 O -0.347 6.347 7 N -0.299 5.299 8 C -0.048 4.048 9 C 0.286 3.714 10 O -0.404 6.404 11 N -0.360 5.360 12 C 0.035 3.965 13 H 0.120 0.880 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.357 4.357 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.027 3.973 25 C 0.009 3.991 26 H 0.077 0.923 27 O -0.368 6.368 28 C 0.328 3.672 29 O -0.343 6.343 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.233 0.767 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.240 23.967 6.334 25.563 hybrid contribution 0.316 -1.441 -0.401 1.528 sum 6.556 22.526 5.933 24.199 Atomic orbital electron populations 1.21783 0.90040 1.03800 1.03622 1.21470 0.99234 0.97114 0.92072 1.21775 1.01183 0.92160 1.03883 1.22711 1.01956 0.95828 0.98404 1.20796 0.79496 0.86134 0.81432 1.90800 1.41226 1.36519 1.66198 1.46314 1.48144 1.26338 1.09112 1.21600 0.96322 0.90320 0.96533 1.20575 0.88384 0.83180 0.79265 1.90734 1.21113 1.77541 1.51026 1.45820 1.18309 1.23328 1.48580 1.22282 0.94389 0.85618 0.94200 0.87971 1.21837 0.97726 0.85817 0.94290 1.44300 1.74242 1.12522 1.01692 1.19091 1.32432 0.93004 0.91185 0.90102 1.24837 1.00889 0.98854 0.95672 1.69928 1.50285 1.32828 1.03897 0.86070 0.79852 0.81373 0.78328 1.21476 1.21711 1.20520 1.21876 1.00117 0.89113 0.86221 1.23432 0.95749 0.95346 0.84533 0.92333 1.86474 1.76057 1.57841 1.16404 1.20747 0.76163 0.79742 0.90584 1.90758 1.55456 1.68987 1.19098 0.90490 0.90900 0.91301 0.91954 0.90822 0.90445 0.85754 0.85966 0.85789 0.85891 0.76722 0.95868 0.93119 0.93625 0.91921 0.93402 0.77599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.45 37.16 0.31 -0.66 16 2 C -0.10 -0.72 1.05 -154.71 -0.16 -0.88 16 3 C -0.13 -0.66 8.44 37.16 0.31 -0.34 16 4 C -0.15 -1.03 6.32 -26.94 -0.17 -1.20 16 5 C 0.53 6.07 8.08 -11.09 -0.09 5.98 16 6 O -0.48 -6.97 17.48 5.60 0.10 -6.87 16 7 N -0.56 -6.54 2.04 -116.63 -0.24 -6.78 16 8 C 0.08 0.88 6.04 -5.20 -0.03 0.84 16 9 C 0.50 7.91 7.90 -10.98 -0.09 7.83 16 10 O -0.53 -10.56 16.18 5.56 0.09 -10.47 16 11 N -0.71 -10.64 5.23 -51.73 -0.27 -10.91 16 12 C 0.14 2.70 3.04 -65.78 -0.20 2.50 16 13 H 0.10 2.29 7.73 -51.93 -0.40 1.89 16 14 C 0.13 2.89 6.92 -2.53 -0.02 2.87 16 15 N -0.60 -15.63 3.40 -169.86 -0.58 -16.21 16 16 C -0.23 -6.51 10.27 -15.06 -0.15 -6.67 16 17 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 18 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 19 N -0.92 -26.96 10.38 55.49 0.58 -26.38 16 20 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.15 3.64 5.17 -2.92 -0.02 3.62 16 25 C 0.07 1.28 3.95 -24.90 -0.10 1.19 16 26 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 27 O -0.56 -9.79 13.39 -35.23 -0.47 -10.26 16 28 C 0.54 6.20 6.75 -11.09 -0.07 6.13 16 29 O -0.47 -6.79 17.47 5.61 0.10 -6.70 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.12 0.74 7.74 -51.93 -0.40 0.34 16 37 H 0.12 0.49 7.74 -51.93 -0.40 0.09 16 38 H 0.12 1.13 7.83 -51.93 -0.41 0.73 16 39 H 0.12 1.13 7.82 -51.93 -0.41 0.72 16 40 H 0.40 4.50 8.51 -40.82 -0.35 4.15 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.06 1.69 7.22 -51.93 -0.37 1.32 16 45 H 0.05 1.22 7.62 -51.93 -0.40 0.83 16 46 H 0.38 4.94 9.12 45.56 0.42 5.35 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -38.26 384.90 -6.55 -44.81 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.06 Total: 5.69 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: -0.57 Total: 20.94 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.51 Total: -60.28 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.19 Total: -34.30 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.26 -6.55 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076995915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.651 kcal (2) G-P(sol) polarization free energy of solvation -38.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds