Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.54520 * 2 1 4 4 C 1.54235 * 110.60357 * 122.84740 * 2 1 3 5 5 C 1.51306 * 103.55622 * 118.51532 * 4 2 1 6 6 O 1.21232 * 125.39961 * 179.97438 * 5 4 2 7 7 N 1.33878 * 109.20776 * 359.97438 * 5 4 2 8 8 C 1.46498 * 122.76288 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47423 * 90.02228 * 8 7 5 10 10 O 1.21282 * 119.99800 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00408 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00089 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.88773 * 37.42881 * 12 11 9 14 14 C 1.54912 * 111.00412 * 273.54867 * 12 11 9 15 15 N 1.47424 * 104.93008 * 204.85953 * 14 12 11 16 16 C 1.36935 * 125.65133 * 204.15523 * 15 14 12 17 17 H 1.08000 * 119.99782 * 354.83049 * 16 15 14 18 18 C 1.38813 * 119.99748 * 174.82743 * 16 15 14 19 19 N 1.31620 * 120.00341 * 7.02995 * 18 16 15 20 20 Si 1.86808 * 119.99539 * 187.02565 * 18 16 15 21 21 H 1.48502 * 109.46896 * 94.99260 * 20 18 16 22 22 H 1.48501 * 109.46951 * 214.98619 * 20 18 16 23 23 H 1.48492 * 109.47136 * 334.98799 * 20 18 16 24 24 C 1.47292 * 108.55382 * 24.15734 * 15 14 12 25 25 C 1.54318 * 107.31103 * 358.92245 * 24 15 14 26 26 H 1.08999 * 110.72000 * 96.17802 * 25 24 15 27 27 O 1.42900 * 110.72507 * 219.45465 * 25 24 15 28 28 C 1.33871 * 114.47757 * 0.26825 * 7 5 4 29 29 O 1.21222 * 125.40270 * 179.70752 * 28 7 5 30 30 H 1.09007 * 109.47054 * 297.15844 * 1 2 3 31 31 H 1.08999 * 109.46912 * 57.15306 * 1 2 3 32 32 H 1.08999 * 109.47172 * 177.15552 * 1 2 3 33 33 H 1.08999 * 109.47309 * 182.84567 * 3 2 1 34 34 H 1.08997 * 109.46793 * 302.84364 * 3 2 1 35 35 H 1.09005 * 109.47256 * 62.84515 * 3 2 1 36 36 H 1.09001 * 110.60611 * 359.97438 * 4 2 1 37 37 H 1.09005 * 110.60396 * 237.03162 * 4 2 1 38 38 H 1.09001 * 109.47121 * 330.02436 * 8 7 5 39 39 H 1.09000 * 109.47261 * 210.02943 * 8 7 5 40 40 H 0.97002 * 119.99689 * 0.02562 * 11 9 8 41 41 H 1.08992 * 110.36450 * 323.75622 * 14 12 11 42 42 H 1.09001 * 110.36555 * 85.96934 * 14 12 11 43 43 H 0.96997 * 119.99818 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.85433 * 239.49866 * 24 15 14 45 45 H 1.09001 * 110.00331 * 118.43573 * 24 15 14 46 46 H 0.96695 * 114.00031 * 293.52652 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0669 1.4327 0.0000 4 6 2.0727 -0.7831 1.2129 5 6 2.8548 -1.9149 0.5831 6 8 3.4528 -2.7779 1.1894 7 7 2.7820 -1.8125 -0.7497 8 6 3.4360 -2.7609 -1.6547 9 6 2.4914 -3.8936 -1.9636 10 8 1.3809 -3.9072 -1.4763 11 7 2.8802 -4.8912 -2.7824 12 6 1.9616 -5.9920 -3.0831 13 1 0.9381 -5.6293 -3.1781 14 6 2.0588 -7.1052 -2.0101 15 7 1.6119 -8.3322 -2.6942 16 6 1.0891 -9.4410 -2.0839 17 1 1.0528 -9.4974 -1.0060 18 6 0.6057 -10.4923 -2.8508 19 7 0.7742 -10.4867 -4.1561 20 14 -0.2838 -11.9152 -2.0299 21 1 -1.7486 -11.6751 -2.0747 22 1 0.0331 -13.1766 -2.7465 23 1 0.1568 -12.0249 -0.6161 24 6 1.8222 -8.1646 -4.1424 25 6 2.4040 -6.7521 -4.3614 26 1 3.4911 -6.7894 -4.4310 27 8 1.8416 -6.1489 -5.5284 28 6 2.0665 -0.7692 -1.1876 29 8 1.8766 -0.4865 -2.3510 30 1 -0.3633 0.4691 0.9144 31 1 -0.3633 0.5574 -0.8634 32 1 -0.3633 -1.0264 -0.0510 33 1 3.1555 1.4127 -0.0510 34 1 1.6725 1.9684 -0.8634 35 1 1.7552 1.9375 0.9144 36 1 1.2527 -1.1722 1.8164 37 1 2.7275 -0.1527 1.8147 38 1 4.3340 -3.1560 -1.1797 39 1 3.7081 -2.2521 -2.5795 40 1 3.7682 -4.8802 -3.1724 41 1 3.0882 -7.2144 -1.6691 42 1 1.4031 -6.8796 -1.1690 43 1 0.4368 -11.2215 -4.6918 44 1 0.8720 -8.2597 -4.6680 45 1 2.5238 -8.9151 -4.5066 46 1 2.0876 -6.5866 -6.3548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076995915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = -146.275391 kcal Electronic energy + Delta-G solvation = -30399.698341 eV Core-core repulsion = 26096.445578 eV Total energy + Delta-G solvation = -4303.252763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -43.26755 -41.04610 -39.80005 -39.44712 -37.28646 -36.73297 -36.22659 -35.68387 -33.74578 -31.31669 -30.11247 -29.01509 -28.34102 -28.07094 -26.34557 -25.27696 -23.03207 -22.37855 -21.96884 -21.65097 -20.32359 -19.26636 -18.84150 -18.43631 -18.16762 -17.43174 -17.35097 -17.13982 -16.58064 -16.30558 -16.13849 -15.82952 -15.43275 -15.31937 -15.27537 -14.87300 -14.65562 -14.53816 -14.43942 -14.38550 -13.80737 -13.57177 -13.45564 -13.22266 -13.13049 -13.10671 -12.82628 -12.78082 -12.63393 -12.51698 -12.12123 -12.06393 -11.94122 -11.79345 -11.62004 -11.42876 -11.07760 -11.04817 -10.80981 -10.71772 -10.32289 -9.02394 -7.95079 -5.31062 0.42892 1.15322 1.36644 1.42413 1.45154 1.53678 1.62821 2.05906 2.43720 2.97274 3.06272 3.14306 3.25121 3.37405 3.46016 3.48345 3.78911 3.81225 3.93822 3.98616 4.06190 4.07631 4.11284 4.23512 4.36759 4.49338 4.56970 4.65029 4.74406 4.77214 4.79719 4.88945 4.90742 5.01737 5.21720 5.27922 5.31599 5.32157 5.40984 5.60641 5.66360 6.08005 6.21218 6.31699 6.64447 6.82675 6.98981 7.03652 7.63182 8.26576 9.15518 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.002648 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.506005 B =10573.194810 C =11242.549837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.138 4.138 5 C 0.525 3.475 6 O -0.515 6.515 7 N -0.565 5.565 8 C 0.079 3.921 9 C 0.496 3.504 10 O -0.577 6.577 11 N -0.694 5.694 12 C 0.155 3.845 13 H 0.066 0.934 14 C 0.133 3.867 15 N -0.622 5.622 16 C -0.251 4.251 17 H 0.079 0.921 18 C -0.059 4.059 19 N -0.945 5.945 20 Si 0.980 3.020 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.159 3.841 25 C 0.094 3.906 26 H 0.100 0.900 27 O -0.569 6.569 28 C 0.531 3.469 29 O -0.509 6.509 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.421 0.579 41 H 0.042 0.958 42 H 0.028 0.972 43 H 0.251 0.749 44 H 0.022 0.978 45 H 0.028 0.972 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 26.196 7.115 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C -0.186 4.186 4 C -0.177 4.177 5 C 0.317 3.683 6 O -0.389 6.389 7 N -0.306 5.306 8 C -0.046 4.046 9 C 0.282 3.718 10 O -0.456 6.456 11 N -0.347 5.347 12 C 0.048 3.952 13 H 0.084 0.916 14 C 0.006 3.994 15 N -0.350 5.350 16 C -0.380 4.380 17 H 0.097 0.903 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.807 3.193 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.193 1.193 24 C 0.034 3.966 25 C 0.033 3.967 26 H 0.118 0.882 27 O -0.377 6.377 28 C 0.321 3.679 29 O -0.382 6.382 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.259 0.741 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.625 26.078 7.511 28.189 hybrid contribution -0.124 -2.076 -0.799 2.228 sum 7.501 24.002 6.713 26.027 Atomic orbital electron populations 1.21821 0.89931 1.02327 1.05128 1.21586 0.99154 0.98255 0.90146 1.21821 1.01514 0.90091 1.05150 1.22862 1.02227 0.94369 0.98197 1.21605 0.78902 0.86543 0.81252 1.90777 1.43066 1.38291 1.66746 1.46582 1.48156 1.26301 1.09584 1.21731 0.95610 0.89026 0.98192 1.21444 0.88398 0.83832 0.78113 1.90714 1.23479 1.78656 1.52762 1.45567 1.18639 1.21978 1.48514 1.21724 0.93766 0.85936 0.93797 0.91562 1.21885 0.97711 0.85489 0.94285 1.44566 1.74337 1.13146 1.02937 1.19415 1.32920 0.94144 0.91506 0.90277 1.25674 1.01676 1.01474 0.96402 1.70120 1.50831 1.33392 1.04979 0.85052 0.78180 0.78129 0.77928 1.21561 1.21379 1.19274 1.21699 0.97955 0.92214 0.84770 1.23124 0.97437 0.91456 0.84654 0.88193 1.86440 1.76457 1.57707 1.17080 1.21579 0.75353 0.79691 0.91250 1.90730 1.56684 1.69958 1.20827 0.87047 0.91588 0.93995 0.91290 0.91622 0.87334 0.84516 0.82159 0.83259 0.83439 0.74061 0.94066 0.95385 0.93988 0.95928 0.95380 0.75193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.45 71.98 0.61 -1.13 16 2 C -0.09 -1.13 1.05 -52.31 -0.06 -1.19 16 3 C -0.13 -0.85 8.44 71.98 0.61 -0.24 16 4 C -0.14 -1.50 6.32 30.46 0.19 -1.31 16 5 C 0.53 11.28 8.08 87.99 0.71 11.99 16 6 O -0.52 -14.65 17.48 -2.88 -0.05 -14.70 16 7 N -0.56 -12.70 2.04 -760.74 -1.55 -14.25 16 8 C 0.08 1.69 6.04 85.63 0.52 2.20 16 9 C 0.50 15.48 7.90 87.66 0.69 16.17 16 10 O -0.58 -23.77 16.18 -3.04 -0.05 -23.82 16 11 N -0.69 -20.07 5.23 -435.96 -2.28 -22.35 16 12 C 0.15 5.99 3.04 46.39 0.14 6.13 16 13 H 0.07 3.09 7.73 -2.39 -0.02 3.07 16 14 C 0.13 5.98 6.92 86.86 0.60 6.58 16 15 N -0.62 -33.32 3.40 -691.31 -2.35 -35.67 16 16 C -0.25 -14.66 10.27 84.03 0.86 -13.80 16 17 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 18 C -0.06 -3.40 5.48 84.86 0.46 -2.93 16 19 N -0.95 -56.73 10.38 21.65 0.22 -56.51 16 20 Si 0.98 46.67 29.56 68.60 2.03 48.70 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C 0.16 7.80 5.17 86.68 0.45 8.25 16 25 C 0.09 3.38 3.95 31.78 0.13 3.50 16 26 H 0.10 2.87 8.00 -2.39 -0.02 2.85 16 27 O -0.57 -19.14 13.39 -148.98 -1.99 -21.14 16 28 C 0.53 11.76 6.75 88.00 0.59 12.35 16 29 O -0.51 -14.56 17.47 -2.85 -0.05 -14.61 16 30 H 0.11 0.65 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 36 H 0.14 1.24 7.74 -2.39 -0.02 1.22 16 37 H 0.16 0.56 7.74 -2.38 -0.02 0.54 16 38 H 0.15 2.41 7.83 -2.39 -0.02 2.39 16 39 H 0.15 2.40 7.82 -2.39 -0.02 2.38 16 40 H 0.42 8.37 8.51 -92.71 -0.79 7.58 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.02 1.27 7.22 -2.38 -0.02 1.25 16 45 H 0.03 1.47 7.62 -2.39 -0.02 1.45 16 46 H 0.40 9.78 9.12 -74.06 -0.68 9.10 16 Total: -1.00 -88.53 384.90 -0.01 -88.54 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -0.44 Total: 19.23 kcal Atomic # 6 Polarization: 40.08 SS G_CDS: 6.51 Total: 46.59 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -5.96 Total: -128.78 kcal Atomic # 8 Polarization: -72.13 SS G_CDS: -2.14 Total: -74.27 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -88.53 -0.01 -88.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076995915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.735 kcal (2) G-P(sol) polarization free energy of solvation -88.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds