Wall clock time and date at job start Sat Apr 11 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99882 * 2 1 4 4 H 1.48498 * 109.47153 * 274.98705 * 3 2 1 5 5 H 1.48492 * 109.47173 * 34.98750 * 3 2 1 6 6 H 1.48499 * 109.46680 * 154.98645 * 3 2 1 7 7 C 1.38806 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00322 * 185.06007 * 7 2 1 9 9 N 1.36938 * 120.00011 * 5.06775 * 7 2 1 10 10 C 1.47583 * 134.49718 * 173.47717 * 9 7 2 11 11 C 1.53943 * 86.11878 * 155.35679 * 10 9 7 12 12 O 1.42903 * 113.74099 * 137.95123 * 11 10 9 13 13 C 1.42901 * 113.99564 * 151.92253 * 12 11 10 14 14 C 1.53041 * 109.45767 * 210.00149 * 13 12 11 15 15 C 1.53196 * 109.31263 * 178.61686 * 14 13 12 16 16 N 1.46932 * 108.77170 * 54.63495 * 15 14 13 17 17 C 1.34779 * 120.62585 * 126.36572 * 16 15 14 18 18 O 1.21277 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99674 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.50896 * 319.30005 * 19 17 16 21 21 C 1.54086 * 110.56417 * 82.04712 * 19 17 16 22 22 O 1.45705 * 104.01120 * 118.57131 * 21 19 17 23 23 C 1.33775 * 109.47470 * 0.02562 * 22 21 19 24 24 O 1.21508 * 123.06842 * 179.97438 * 23 22 21 25 25 N 1.34324 * 113.90013 * 0.08330 * 23 22 21 26 26 C 1.46924 * 118.74121 * 306.64248 * 16 15 14 27 27 C 1.52767 * 109.00458 * 53.31157 * 26 16 15 28 28 C 1.47816 * 134.45656 * 353.34424 * 9 7 2 29 29 H 0.97004 * 119.99987 * 0.02562 * 1 2 3 30 30 H 1.09004 * 113.76515 * 41.05621 * 10 9 7 31 31 H 1.09002 * 113.77121 * 269.66208 * 10 9 7 32 32 H 1.09000 * 113.74241 * 269.15701 * 11 10 9 33 33 H 1.08991 * 109.46473 * 329.97533 * 13 12 11 34 34 H 1.08998 * 109.50098 * 58.67015 * 14 13 12 35 35 H 1.08996 * 109.49938 * 298.57087 * 14 13 12 36 36 H 1.08994 * 109.58512 * 294.85149 * 15 14 13 37 37 H 1.09003 * 109.58609 * 174.42023 * 15 14 13 38 38 H 1.09006 * 110.52033 * 237.20249 * 21 19 17 39 39 H 1.08995 * 110.52190 * 359.80169 * 21 19 17 40 40 H 0.97008 * 125.73141 * 179.91429 * 25 23 22 41 41 H 1.09001 * 109.58209 * 173.14102 * 26 16 15 42 42 H 1.08992 * 109.58375 * 293.57017 * 26 16 15 43 43 H 1.08997 * 109.55800 * 185.55141 * 27 26 16 44 44 H 1.09000 * 109.36228 * 65.50026 * 27 26 16 45 45 H 1.08999 * 113.77224 * 90.37617 * 28 9 7 46 46 H 1.09000 * 113.83279 * 318.92125 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0870 -1.2039 0.0830 9 7 1.3296 -2.3857 -0.1037 10 6 1.7286 -3.7985 -0.2551 11 6 0.3710 -4.1417 0.3844 12 8 -0.3006 -5.2357 -0.2434 13 6 -1.1661 -5.9644 0.6295 14 6 -1.2345 -7.4248 0.1772 15 6 -2.1356 -8.2103 1.1353 16 7 -3.4412 -7.5406 1.2124 17 6 -4.5785 -8.2243 0.9766 18 8 -4.5305 -9.4037 0.6982 19 6 -5.9100 -7.5234 1.0601 20 1 -5.9290 -6.8394 1.9086 21 6 -6.2076 -6.7690 -0.2500 22 8 -7.4252 -7.3950 -0.7488 23 6 -7.8100 -8.3579 0.0964 24 8 -8.7999 -9.0397 -0.0817 25 7 -7.0041 -8.5013 1.1614 26 6 -3.4829 -6.1102 1.5454 27 6 -2.5670 -5.3497 0.5881 28 6 -0.1001 -2.7610 -0.1072 29 1 -0.4850 0.8401 -0.0004 30 1 2.5860 -4.0808 0.3560 31 1 1.8196 -4.1206 -1.2925 32 1 0.4075 -4.2320 1.4700 33 1 -0.7790 -5.9172 1.6473 34 1 -0.2331 -7.8553 0.1846 35 1 -1.6449 -7.4745 -0.8313 36 1 -1.6802 -8.2380 2.1252 37 1 -2.2674 -9.2261 0.7628 38 1 -6.3759 -5.7104 -0.0517 39 1 -5.3906 -6.8986 -0.9597 40 1 -7.1220 -9.1437 1.8786 41 1 -4.5034 -5.7410 1.4433 42 1 -3.1396 -5.9633 2.5693 43 1 -2.5141 -4.3031 0.8879 44 1 -2.9649 -5.4189 -0.4243 45 1 -0.5476 -2.7776 -1.1010 46 1 -0.7002 -2.2163 0.6217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093532894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:57 Heat of formation + Delta-G solvation = -79.925149 kcal Electronic energy + Delta-G solvation = -29944.319818 eV Core-core repulsion = 25643.944217 eV Total energy + Delta-G solvation = -4300.375600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.28469 -40.43050 -38.90108 -37.61943 -37.44710 -35.65175 -35.16234 -32.58751 -31.95088 -31.46200 -30.04588 -27.56210 -25.92538 -24.92368 -24.45333 -23.57418 -22.87426 -22.82893 -21.41513 -19.90797 -19.30775 -18.71852 -18.38098 -17.33333 -17.03536 -16.85369 -16.43813 -16.01555 -15.70944 -15.16551 -14.98785 -14.82770 -14.69422 -14.52091 -14.39749 -13.97905 -13.92050 -13.84024 -13.43326 -13.14829 -12.85089 -12.53716 -12.17571 -12.11867 -11.84040 -11.58023 -11.35483 -11.32980 -11.19973 -11.10691 -10.95076 -10.79843 -10.68833 -10.59991 -10.48029 -10.05585 -9.72751 -9.62400 -9.21126 -8.87202 -8.85958 -6.97282 -5.87780 -3.19450 1.85086 2.00340 2.28778 2.47648 3.05428 3.33386 3.38584 3.40546 3.47608 3.65048 3.81080 4.04512 4.29297 4.40678 4.47818 4.56856 4.66080 4.69682 4.83749 4.91367 4.93995 5.10609 5.13945 5.22495 5.24697 5.39244 5.41804 5.50368 5.59813 5.62037 5.73134 5.89648 6.01459 6.12001 6.27708 6.32683 6.53532 6.57317 6.72358 6.79395 6.99373 7.11693 7.43350 7.49697 7.65472 7.75752 7.88278 8.95147 9.61013 10.49781 11.30138 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.002216 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.371095 B =12633.590192 C =13674.624391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.120 3.880 11 C 0.033 3.967 12 O -0.371 6.371 13 C 0.092 3.908 14 C -0.133 4.133 15 C 0.115 3.885 16 N -0.604 5.604 17 C 0.506 3.494 18 O -0.521 6.521 19 C 0.074 3.926 20 H 0.129 0.871 21 C 0.054 3.946 22 O -0.319 6.319 23 C 0.652 3.348 24 O -0.516 6.516 25 N -0.712 5.712 26 C 0.103 3.897 27 C -0.161 4.161 28 C 0.154 3.846 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.440 0.560 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.450 -14.779 6.548 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.100 0.900 9 N -0.338 5.338 10 C -0.007 4.007 11 C -0.025 4.025 12 O -0.289 6.289 13 C 0.034 3.966 14 C -0.171 4.171 15 C -0.007 4.007 16 N -0.339 5.339 17 C 0.290 3.710 18 O -0.396 6.396 19 C -0.036 4.036 20 H 0.147 0.853 21 C -0.022 4.022 22 O -0.229 6.229 23 C 0.404 3.596 24 O -0.400 6.400 25 N -0.385 5.385 26 C -0.019 4.019 27 C -0.199 4.199 28 C 0.028 3.972 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.284 0.716 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.995 -15.290 5.776 19.158 hybrid contribution 0.695 0.979 0.580 1.333 sum -9.300 -14.311 6.356 18.212 Atomic orbital electron populations 1.69829 1.05087 1.25485 1.56149 1.24835 0.95735 0.97625 1.02118 0.86103 0.78745 0.83345 0.77614 1.21513 1.21642 1.20487 1.18991 0.90760 0.81687 1.43625 0.90036 1.45693 1.02545 1.00690 1.84839 1.22739 0.93930 0.86062 0.97918 1.25124 0.94631 0.86507 0.96270 1.87969 1.59249 1.44773 1.36910 1.21972 0.89785 0.90925 0.93938 1.22015 1.00587 0.94328 1.00156 1.21688 0.81327 0.97609 1.00097 1.48205 1.06168 1.10761 1.68730 1.20520 0.85303 0.87480 0.77649 1.90770 1.86589 1.15343 1.46922 1.22361 0.87376 0.92056 1.01805 0.85348 1.24308 0.86373 0.98484 0.93021 1.87327 1.41760 1.47835 1.45989 1.18511 0.82883 0.79589 0.78608 1.91097 1.26411 1.46438 1.76048 1.45746 1.25648 1.40406 1.26681 1.21847 1.01180 0.78950 0.99967 1.22445 0.95964 1.00928 1.00586 1.22686 0.88101 0.87820 0.98573 0.93567 0.93617 0.93989 0.90174 0.92165 0.89680 0.90599 0.90788 0.88418 0.85788 0.86954 0.71569 0.89678 0.90158 0.89040 0.90429 0.94700 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 11.51 55.49 0.64 -25.56 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.41 29.56 -169.99 -5.02 16.39 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.22 -6.09 10.70 -15.06 -0.16 -6.26 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -15.18 3.70 -177.96 -0.66 -15.84 16 10 C 0.12 2.39 8.77 -2.97 -0.03 2.36 16 11 C 0.03 0.57 4.44 -25.81 -0.11 0.46 16 12 O -0.37 -5.56 10.01 -35.23 -0.35 -5.91 16 13 C 0.09 0.96 2.57 -26.69 -0.07 0.89 16 14 C -0.13 -1.17 5.73 -26.61 -0.15 -1.32 16 15 C 0.11 0.86 6.44 -3.71 -0.02 0.84 16 16 N -0.60 -4.18 2.98 -173.03 -0.52 -4.69 16 17 C 0.51 4.13 6.81 -10.98 -0.07 4.06 16 18 O -0.52 -6.39 15.99 5.56 0.09 -6.30 16 19 C 0.07 0.42 3.14 -68.19 -0.21 0.20 16 20 H 0.13 0.28 6.91 -51.93 -0.36 -0.08 16 21 C 0.05 0.30 7.27 37.72 0.27 0.58 16 22 O -0.32 -3.27 11.09 -37.84 -0.42 -3.69 16 23 C 0.65 7.49 9.16 53.85 0.49 7.98 16 24 O -0.52 -7.97 18.04 -19.11 -0.34 -8.32 16 25 N -0.71 -5.60 5.67 -59.27 -0.34 -5.94 16 26 C 0.10 0.54 6.18 -3.93 -0.02 0.52 16 27 C -0.16 -1.36 5.68 -26.83 -0.15 -1.51 16 28 C 0.15 3.41 7.27 -2.84 -0.02 3.39 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.29 7.47 -51.93 -0.39 0.91 16 33 H 0.06 0.59 7.43 -51.93 -0.39 0.20 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.84 7.01 -51.93 -0.36 0.48 16 38 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 0.63 7.72 -51.93 -0.40 0.22 16 40 H 0.44 2.85 8.96 -40.82 -0.37 2.49 16 41 H 0.08 0.22 5.32 -51.93 -0.28 -0.05 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 1.61 7.37 -51.93 -0.38 1.23 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -36.51 375.28 -8.33 -44.84 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.70 Total: -2.55 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -0.36 Total: 11.93 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.87 Total: -52.03 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.03 Total: -24.22 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.51 -8.33 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093532894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.090 kcal (2) G-P(sol) polarization free energy of solvation -36.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds