Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46901 * 270.00114 * 3 2 1 5 5 H 1.48502 * 109.47151 * 29.99240 * 3 2 1 6 6 H 1.48493 * 109.47612 * 149.99564 * 3 2 1 7 7 C 1.38814 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00378 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99544 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49095 * 179.97438 * 9 7 2 11 11 C 1.53954 * 86.11528 * 155.36042 * 10 9 7 12 12 O 1.42901 * 113.73717 * 137.95438 * 11 10 9 13 13 C 1.42903 * 113.99872 * 151.92747 * 12 11 10 14 14 C 1.53035 * 109.45890 * 209.99881 * 13 12 11 15 15 C 1.53191 * 109.31064 * 178.61431 * 14 13 12 16 16 N 1.46924 * 108.78009 * 54.63070 * 15 14 13 17 17 C 1.34777 * 120.62813 * 126.36522 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72946 * 17 16 15 20 20 H 1.09001 * 115.55204 * 34.69144 * 19 17 16 21 21 C 1.53002 * 117.49942 * 249.02519 * 19 17 16 22 22 C 1.53005 * 117.50073 * 180.36469 * 19 17 16 23 23 H 1.08999 * 117.49213 * 0.02562 * 22 19 17 24 24 N 1.46489 * 117.50144 * 214.97904 * 22 19 17 25 25 O 1.21797 * 120.00088 * 119.99827 * 24 22 19 26 26 O 1.21802 * 119.99981 * 299.99860 * 24 22 19 27 27 C 1.46921 * 118.73733 * 306.64950 * 16 15 14 28 28 C 1.52760 * 109.00994 * 53.30469 * 27 16 15 29 29 C 1.47818 * 134.45821 * 359.86914 * 9 7 2 30 30 H 0.97002 * 119.99884 * 0.02562 * 1 2 3 31 31 H 1.08998 * 113.76756 * 41.06435 * 10 9 7 32 32 H 1.09001 * 113.87340 * 269.67392 * 10 9 7 33 33 H 1.08995 * 113.73960 * 269.15586 * 11 10 9 34 34 H 1.09002 * 109.44536 * 329.96044 * 13 12 11 35 35 H 1.08994 * 109.50277 * 58.65952 * 14 13 12 36 36 H 1.08997 * 109.49664 * 298.55885 * 14 13 12 37 37 H 1.09006 * 109.58943 * 294.84276 * 15 14 13 38 38 H 1.09008 * 109.58890 * 174.42502 * 15 14 13 39 39 H 1.09008 * 117.49817 * 359.97438 * 21 19 17 40 40 H 1.08998 * 117.50247 * 144.99356 * 21 19 17 41 41 H 1.09004 * 109.58490 * 173.13980 * 27 16 15 42 42 H 1.09002 * 109.58518 * 293.56338 * 27 16 15 43 43 H 1.09005 * 109.56000 * 185.55371 * 28 27 16 44 44 H 1.08994 * 109.38732 * 65.51586 * 28 27 16 45 45 H 1.09000 * 113.76710 * 90.37715 * 29 9 7 46 46 H 1.08996 * 113.83463 * 318.91353 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 1.7202 -3.8101 0.0019 11 6 0.3475 -4.0826 0.6435 12 8 -0.3164 -5.2323 0.1149 13 6 -1.2042 -5.8664 1.0379 14 6 -1.2708 -7.3648 0.7338 15 6 -2.1961 -8.0466 1.7465 16 7 -3.4994 -7.3685 1.7278 17 6 -4.6351 -8.0688 1.5377 18 8 -4.5876 -9.2705 1.3806 19 6 -5.9648 -7.3596 1.5272 20 1 -5.9594 -6.3569 1.0997 21 6 -6.9158 -7.6239 2.6962 22 6 -7.2181 -8.2112 1.3153 23 1 -7.0809 -9.2845 1.1839 24 7 -8.3192 -7.6165 0.5538 25 8 -8.7018 -8.1430 -0.4758 26 8 -8.8522 -6.5956 0.9502 27 6 -3.5404 -5.9117 1.9138 28 6 -2.6005 -5.2545 0.9047 29 6 -0.1058 -2.7571 0.0048 30 1 -0.4850 0.8401 -0.0004 31 1 2.5629 -4.0320 0.6567 32 1 1.8319 -4.2372 -0.9947 33 1 0.3608 -4.0630 1.7332 34 1 -0.8380 -5.7180 2.0538 35 1 -0.2722 -7.7955 0.8060 36 1 -1.6603 -7.5146 -0.2731 37 1 -1.7618 -7.9759 2.7438 38 1 -2.3255 -9.0945 1.4757 39 1 -6.5799 -8.3112 3.4728 40 1 -7.5360 -6.7953 3.0378 41 1 -4.5565 -5.5513 1.7532 42 1 -3.2179 -5.6632 2.9250 43 1 -2.5483 -4.1831 1.0986 44 1 -2.9772 -5.4238 -0.1040 45 1 -0.5319 -2.8726 -0.9918 46 1 -0.7183 -2.1397 0.6618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093536419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = 5.744002 kcal Electronic energy + Delta-G solvation = -29442.868092 eV Core-core repulsion = 25146.207385 eV Total energy + Delta-G solvation = -4296.660707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.71092 -40.92914 -39.08880 -37.90127 -37.14921 -36.58390 -35.63064 -32.45749 -31.80269 -31.43956 -28.41974 -27.54144 -26.01839 -24.90237 -24.35018 -23.48844 -22.85828 -22.61410 -21.12692 -19.87870 -19.56025 -19.19483 -18.86673 -17.81602 -17.58650 -16.89144 -16.63272 -16.38915 -15.90313 -15.10155 -14.94010 -14.75087 -14.50211 -14.26880 -14.04513 -13.80622 -13.33010 -13.24743 -13.07620 -12.62084 -12.18483 -12.14402 -12.09055 -11.90454 -11.86794 -11.81328 -11.51304 -11.43897 -11.43321 -11.32788 -11.16691 -10.94608 -10.72630 -10.60160 -10.50206 -10.36502 -10.04733 -9.60854 -9.22336 -8.85659 -8.83526 -6.96472 -5.83822 -3.16760 0.02800 1.08630 1.69229 2.30061 2.59953 3.17120 3.34962 3.39558 3.41775 3.48177 3.66940 3.82684 3.97762 4.37476 4.42297 4.51365 4.61366 4.70146 4.78342 4.88109 4.90606 4.95724 5.12771 5.16759 5.23954 5.29042 5.39872 5.43132 5.51228 5.61992 5.64435 5.74740 5.91312 5.92283 6.03834 6.13762 6.34121 6.55187 6.57959 6.76067 7.02054 7.15379 7.21623 7.45203 7.46980 7.77809 7.90872 8.97537 9.63466 10.51530 11.33433 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.002178 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.716848 B =12855.627587 C =14111.044746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.120 3.880 11 C 0.033 3.967 12 O -0.372 6.372 13 C 0.093 3.907 14 C -0.133 4.133 15 C 0.115 3.885 16 N -0.598 5.598 17 C 0.548 3.452 18 O -0.535 6.535 19 C -0.149 4.149 20 H 0.150 0.850 21 C -0.105 4.105 22 C -0.062 4.062 23 H 0.186 0.814 24 N 0.010 4.990 25 O -0.150 6.150 26 O -0.159 6.159 27 C 0.105 3.895 28 C -0.161 4.161 29 C 0.150 3.850 30 H 0.254 0.746 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.996 -17.648 8.751 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.099 0.901 9 N -0.337 5.337 10 C -0.006 4.006 11 C -0.025 4.025 12 O -0.289 6.289 13 C 0.034 3.966 14 C -0.171 4.171 15 C -0.007 4.007 16 N -0.330 5.330 17 C 0.334 3.666 18 O -0.412 6.412 19 C -0.171 4.171 20 H 0.168 0.832 21 C -0.143 4.143 22 C -0.162 4.162 23 H 0.203 0.797 24 N 0.532 4.468 25 O -0.369 6.369 26 O -0.377 6.377 27 C -0.018 4.018 28 C -0.200 4.200 29 C 0.025 3.975 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.308 -18.313 8.897 23.290 hybrid contribution 0.236 1.292 -0.271 1.341 sum -11.072 -17.022 8.625 22.062 Atomic orbital electron populations 1.69816 1.05046 1.25447 1.56464 1.24809 0.95737 0.97627 1.02274 0.86087 0.78602 0.83202 0.77674 1.21513 1.21558 1.20557 1.18993 0.90267 0.81592 1.44125 0.90063 1.45711 1.02538 0.99315 1.86172 1.22733 0.93868 0.86188 0.97783 1.25113 0.94651 0.85362 0.97365 1.87964 1.58238 1.43702 1.39039 1.21971 0.89515 0.91756 0.93326 1.22016 1.00367 0.94601 1.00128 1.21720 0.81131 0.98035 0.99791 1.48045 1.06116 1.08599 1.70249 1.19075 0.84072 0.86729 0.76731 1.90749 1.86625 1.13970 1.49883 1.22854 0.88624 1.00816 1.04815 0.83227 1.23688 0.97824 1.03754 0.89006 1.25007 0.89543 1.01397 1.00219 0.79729 1.43771 1.01788 1.00339 1.00900 1.94602 1.66779 1.63604 1.11936 1.94561 1.57826 1.12801 1.72495 1.21857 1.01382 0.78150 1.00383 1.22442 0.95765 1.01657 1.00101 1.22749 0.88181 0.88845 0.97743 0.93570 0.93582 0.94011 0.90146 0.92136 0.89568 0.90606 0.90668 0.88327 0.84732 0.84067 0.89391 0.90171 0.89055 0.90568 0.94890 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 11.39 55.49 0.63 -26.17 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.61 -15.58 3.70 -177.93 -0.66 -16.24 16 10 C 0.12 2.48 8.77 -2.96 -0.03 2.45 16 11 C 0.03 0.61 4.44 -25.79 -0.11 0.50 16 12 O -0.37 -5.96 10.01 -35.23 -0.35 -6.31 16 13 C 0.09 1.08 2.57 -26.69 -0.07 1.01 16 14 C -0.13 -1.30 5.73 -26.61 -0.15 -1.45 16 15 C 0.11 0.95 6.43 -3.71 -0.02 0.93 16 16 N -0.60 -4.96 2.98 -173.03 -0.52 -5.47 16 17 C 0.55 4.94 7.48 -10.98 -0.08 4.86 16 18 O -0.53 -6.42 15.67 5.55 0.09 -6.33 16 19 C -0.15 -1.00 5.02 -91.77 -0.46 -1.46 16 20 H 0.15 0.89 6.56 -51.93 -0.34 0.55 16 21 C -0.10 -0.47 9.72 -26.69 -0.26 -0.73 16 22 C -0.06 -0.46 6.43 -67.89 -0.44 -0.89 16 23 H 0.19 1.34 7.67 -51.93 -0.40 0.94 16 24 N 0.01 0.10 4.33 -4.86 -0.02 0.08 16 25 O -0.15 -1.81 19.24 -29.46 -0.57 -2.38 16 26 O -0.16 -1.71 18.28 -29.46 -0.54 -2.25 16 27 C 0.10 0.76 6.32 -3.94 -0.02 0.73 16 28 C -0.16 -1.67 5.68 -26.84 -0.15 -1.83 16 29 C 0.15 3.47 7.36 -2.83 -0.02 3.45 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.37 7.47 -51.93 -0.39 0.98 16 34 H 0.06 0.65 7.43 -51.93 -0.39 0.27 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.88 7.01 -51.92 -0.36 0.52 16 39 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.14 0.48 7.63 -51.93 -0.40 0.08 16 41 H 0.09 0.49 5.51 -51.93 -0.29 0.20 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.80 7.17 -51.93 -0.37 1.43 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -33.88 382.63 -9.98 -43.86 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.70 Total: -2.22 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.08 Total: 0.91 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.56 Total: -47.81 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -1.37 Total: -17.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.88 -9.98 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093536419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.599 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds