Wall clock time and date at job start Sat Apr 11 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46901 * 270.00114 * 3 2 1 5 5 H 1.48502 * 109.47151 * 29.99240 * 3 2 1 6 6 H 1.48493 * 109.47612 * 149.99564 * 3 2 1 7 7 C 1.38814 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00378 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99544 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49095 * 179.97438 * 9 7 2 11 11 C 1.53954 * 86.11528 * 155.36042 * 10 9 7 12 12 O 1.42901 * 113.73717 * 137.95438 * 11 10 9 13 13 C 1.42903 * 113.99872 * 151.92747 * 12 11 10 14 14 C 1.53035 * 109.45890 * 209.99881 * 13 12 11 15 15 C 1.53191 * 109.31064 * 178.61431 * 14 13 12 16 16 N 1.46924 * 108.78009 * 54.63070 * 15 14 13 17 17 C 1.34777 * 120.62813 * 126.36522 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72946 * 17 16 15 20 20 H 1.09001 * 115.55204 * 34.69144 * 19 17 16 21 21 C 1.53002 * 117.49942 * 249.02519 * 19 17 16 22 22 C 1.53005 * 117.50073 * 180.36469 * 19 17 16 23 23 H 1.08999 * 117.49213 * 0.02562 * 22 19 17 24 24 N 1.46489 * 117.50144 * 214.97904 * 22 19 17 25 25 O 1.21797 * 120.00088 * 119.99827 * 24 22 19 26 26 O 1.21802 * 119.99981 * 299.99860 * 24 22 19 27 27 C 1.46921 * 118.73733 * 306.64950 * 16 15 14 28 28 C 1.52760 * 109.00994 * 53.30469 * 27 16 15 29 29 C 1.47818 * 134.45821 * 359.86914 * 9 7 2 30 30 H 0.97002 * 119.99884 * 0.02562 * 1 2 3 31 31 H 1.08998 * 113.76756 * 41.06435 * 10 9 7 32 32 H 1.09001 * 113.87340 * 269.67392 * 10 9 7 33 33 H 1.08995 * 113.73960 * 269.15586 * 11 10 9 34 34 H 1.09002 * 109.44536 * 329.96044 * 13 12 11 35 35 H 1.08994 * 109.50277 * 58.65952 * 14 13 12 36 36 H 1.08997 * 109.49664 * 298.55885 * 14 13 12 37 37 H 1.09006 * 109.58943 * 294.84276 * 15 14 13 38 38 H 1.09008 * 109.58890 * 174.42502 * 15 14 13 39 39 H 1.09008 * 117.49817 * 359.97438 * 21 19 17 40 40 H 1.08998 * 117.50247 * 144.99356 * 21 19 17 41 41 H 1.09004 * 109.58490 * 173.13980 * 27 16 15 42 42 H 1.09002 * 109.58518 * 293.56338 * 27 16 15 43 43 H 1.09005 * 109.56000 * 185.55371 * 28 27 16 44 44 H 1.08994 * 109.38732 * 65.51586 * 28 27 16 45 45 H 1.09000 * 113.76710 * 90.37715 * 29 9 7 46 46 H 1.08996 * 113.83463 * 318.91353 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 1.7202 -3.8101 0.0019 11 6 0.3475 -4.0826 0.6435 12 8 -0.3164 -5.2323 0.1149 13 6 -1.2042 -5.8664 1.0379 14 6 -1.2708 -7.3648 0.7338 15 6 -2.1961 -8.0466 1.7465 16 7 -3.4994 -7.3685 1.7278 17 6 -4.6351 -8.0688 1.5377 18 8 -4.5876 -9.2705 1.3806 19 6 -5.9648 -7.3596 1.5272 20 1 -5.9594 -6.3569 1.0997 21 6 -6.9158 -7.6239 2.6962 22 6 -7.2181 -8.2112 1.3153 23 1 -7.0809 -9.2845 1.1839 24 7 -8.3192 -7.6165 0.5538 25 8 -8.7018 -8.1430 -0.4758 26 8 -8.8522 -6.5956 0.9502 27 6 -3.5404 -5.9117 1.9138 28 6 -2.6005 -5.2545 0.9047 29 6 -0.1058 -2.7571 0.0048 30 1 -0.4850 0.8401 -0.0004 31 1 2.5629 -4.0320 0.6567 32 1 1.8319 -4.2372 -0.9947 33 1 0.3608 -4.0630 1.7332 34 1 -0.8380 -5.7180 2.0538 35 1 -0.2722 -7.7955 0.8060 36 1 -1.6603 -7.5146 -0.2731 37 1 -1.7618 -7.9759 2.7438 38 1 -2.3255 -9.0945 1.4757 39 1 -6.5799 -8.3112 3.4728 40 1 -7.5360 -6.7953 3.0378 41 1 -4.5565 -5.5513 1.7532 42 1 -3.2179 -5.6632 2.9250 43 1 -2.5483 -4.1831 1.0986 44 1 -2.9772 -5.4238 -0.1040 45 1 -0.5319 -2.8726 -0.9918 46 1 -0.7183 -2.1397 0.6618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093536419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:04 Heat of formation + Delta-G solvation = 33.903929 kcal Electronic energy + Delta-G solvation = -29441.646986 eV Core-core repulsion = 25146.207385 eV Total energy + Delta-G solvation = -4295.439601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.02440 -41.11278 -39.44792 -38.34790 -37.67125 -36.70925 -35.54708 -33.20183 -32.72030 -32.21307 -32.05739 -27.95131 -27.44391 -26.58242 -25.32170 -24.60258 -23.68187 -22.71843 -21.70134 -20.71632 -20.54267 -19.64877 -19.26541 -18.67640 -18.09573 -17.44776 -16.98563 -16.92149 -16.45835 -16.16309 -15.97123 -15.82548 -15.67185 -15.54089 -14.87038 -14.59074 -14.54172 -14.42716 -14.40469 -14.09216 -14.00727 -13.75233 -13.61922 -13.33020 -13.16901 -13.06654 -12.79235 -12.44343 -12.31588 -12.25090 -12.01443 -11.91511 -11.55882 -11.26572 -11.09171 -10.89696 -10.66185 -10.43375 -10.30919 -9.57800 -9.13609 -8.64723 -8.44442 -4.11975 -1.64208 0.33046 0.76936 0.99523 1.59904 1.70258 1.85601 2.05595 2.13659 2.33482 2.47565 2.84765 3.15593 3.22796 3.54658 3.66703 3.74580 3.88170 3.96174 3.99695 4.07287 4.13479 4.15370 4.28853 4.30038 4.33739 4.35943 4.41647 4.45753 4.50144 4.54385 4.70157 4.74077 4.83885 4.86510 4.89797 4.96807 5.01699 5.12545 5.18686 5.19429 5.30283 5.57809 5.72054 5.83466 5.93699 6.07082 6.46755 7.43872 10.31340 11.57911 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.002178 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.716848 B =12855.627587 C =14111.044746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.085 4.085 3 Si 1.035 2.965 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.192 1.192 7 C 0.383 3.617 8 H 0.288 0.712 9 N -0.439 5.439 10 C 0.082 3.918 11 C 0.029 3.971 12 O -0.361 6.361 13 C 0.114 3.886 14 C -0.125 4.125 15 C 0.104 3.896 16 N -0.614 5.614 17 C 0.562 3.438 18 O -0.600 6.600 19 C -0.287 4.287 20 H 0.065 0.935 21 C -0.180 4.180 22 C 0.083 3.917 23 H 0.049 0.951 24 N -0.233 5.233 25 O -0.814 6.814 26 O -0.791 6.791 27 C 0.101 3.899 28 C -0.151 4.151 29 C 0.044 3.956 30 H 0.374 0.626 31 H 0.177 0.823 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.040 0.960 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.037 0.963 45 H 0.132 0.868 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 81.568 43.839 3.502 92.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.320 4.320 3 Si 0.847 3.153 4 H -0.176 1.176 5 H -0.201 1.201 6 H -0.113 1.113 7 C 0.204 3.796 8 H 0.303 0.697 9 N -0.109 5.109 10 C -0.036 4.036 11 C -0.031 4.031 12 O -0.278 6.278 13 C 0.057 3.943 14 C -0.163 4.163 15 C -0.017 4.017 16 N -0.349 5.349 17 C 0.355 3.645 18 O -0.483 6.483 19 C -0.320 4.320 20 H 0.083 0.917 21 C -0.224 4.224 22 C -0.044 4.044 23 H 0.067 0.933 24 N 0.016 4.984 25 O -0.873 6.873 26 O -0.851 6.851 27 C -0.022 4.022 28 C -0.189 4.189 29 C -0.077 4.077 30 H 0.193 0.807 31 H 0.195 0.805 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.059 0.941 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.124 0.876 43 H 0.131 0.869 44 H 0.056 0.944 45 H 0.150 0.850 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 80.772 43.053 2.932 91.576 hybrid contribution -2.150 0.701 -0.408 2.298 sum 78.622 43.754 2.524 90.012 Atomic orbital electron populations 1.69886 1.10017 1.41580 0.96736 1.28797 0.97556 1.07454 0.98228 0.84140 0.80165 0.69001 0.81948 1.17617 1.20064 1.11289 1.26662 1.02340 0.80030 0.70581 0.69669 1.50891 1.13908 1.08925 1.37143 1.25060 0.99696 0.71241 1.07583 1.24687 0.92590 0.84670 1.01124 1.88025 1.58207 1.41739 1.39878 1.22080 0.87328 0.90841 0.94060 1.21959 1.00956 0.95048 0.98318 1.21798 0.81422 0.97314 1.01164 1.48309 1.05380 1.08832 1.72342 1.19669 0.84792 0.85965 0.74100 1.90454 1.87687 1.16885 1.53254 1.22377 0.91702 1.04395 1.13549 0.91680 1.21786 1.05722 1.04770 0.90109 1.21135 0.92328 0.93166 0.97801 0.93349 1.38140 1.26547 1.17702 1.15991 1.93099 1.86123 1.78007 1.30089 1.93049 1.76484 1.30838 1.84730 1.21773 1.00914 0.78423 1.01062 1.22403 0.96200 1.01763 0.98574 1.25344 0.80944 0.95168 1.06263 0.80711 0.80547 0.82967 0.84034 0.86650 0.86071 0.94131 0.87750 0.91937 0.88076 0.92408 0.93177 0.87581 0.86942 0.94365 0.84991 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 9.67 11.39 21.65 0.25 9.92 16 2 C -0.08 2.16 5.50 84.86 0.47 2.62 16 3 Si 1.03 -23.88 29.55 68.60 2.03 -21.85 16 4 H -0.25 4.57 7.11 99.48 0.71 5.28 16 5 H -0.28 4.12 7.11 99.48 0.71 4.82 16 6 H -0.19 5.11 7.11 99.48 0.71 5.81 16 7 C 0.38 -12.51 10.70 84.03 0.90 -11.62 16 8 H 0.29 -13.29 7.83 -2.91 -0.02 -13.31 16 9 N -0.44 11.50 3.70 -720.67 -2.67 8.83 16 10 C 0.08 -2.10 8.77 86.49 0.76 -1.34 16 11 C 0.03 -0.43 4.44 31.26 0.14 -0.29 16 12 O -0.36 0.31 10.01 -148.98 -1.49 -1.18 16 13 C 0.11 0.87 2.57 30.62 0.08 0.95 16 14 C -0.12 -2.09 5.73 30.67 0.18 -1.91 16 15 C 0.10 2.92 6.43 86.36 0.56 3.48 16 16 N -0.61 -25.57 2.98 -819.72 -2.44 -28.01 16 17 C 0.56 35.05 7.48 87.66 0.66 35.71 16 18 O -0.60 -41.21 15.67 -3.04 -0.05 -41.26 16 19 C -0.29 -22.24 5.02 -11.54 -0.06 -22.29 16 20 H 0.07 5.24 6.56 -2.39 -0.02 5.22 16 21 C -0.18 -14.33 9.72 30.62 0.30 -14.03 16 22 C 0.08 8.10 6.43 45.02 0.29 8.39 16 23 H 0.05 4.78 7.67 -2.39 -0.02 4.76 16 24 N -0.23 -27.61 4.33 -169.29 -0.73 -28.34 16 25 O -0.81 -102.92 19.24 18.89 0.36 -102.56 16 26 O -0.79 -96.34 18.28 18.88 0.35 -95.99 16 27 C 0.10 3.18 6.32 86.22 0.54 3.72 16 28 C -0.15 -2.78 5.68 30.53 0.17 -2.61 16 29 C 0.04 -0.69 7.36 86.45 0.64 -0.05 16 30 H 0.37 -6.25 8.31 -92.71 -0.77 -7.02 16 31 H 0.18 -5.81 8.14 -2.39 -0.02 -5.83 16 32 H 0.15 -3.72 8.14 -2.39 -0.02 -3.74 16 33 H 0.14 -2.62 7.47 -2.39 -0.02 -2.64 16 34 H 0.12 -0.07 7.43 -2.39 -0.02 -0.09 16 35 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.06 2.23 7.01 -2.38 -0.02 2.21 16 39 H 0.10 6.95 8.14 -2.38 -0.02 6.93 16 40 H 0.06 4.83 7.63 -2.39 -0.02 4.81 16 41 H 0.05 2.19 5.51 -2.38 -0.01 2.18 16 42 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.13 -1.53 8.14 -2.39 -0.02 -1.55 16 46 H 0.13 -1.87 7.17 -2.39 -0.02 -1.89 16 Total: -1.00 -287.69 382.63 2.21 -285.48 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.00 Total: 14.24 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.61 Total: 0.72 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: -5.60 Total: -37.60 kcal Atomic # 8 Polarization: -240.16 SS G_CDS: -0.83 Total: -240.99 kcal Atomic # 14 Polarization: -23.88 SS G_CDS: 2.03 Total: -21.85 kcal Total: -287.69 2.21 -285.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093536419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 319.381 kcal (2) G-P(sol) polarization free energy of solvation -287.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -285.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds