Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41380 * 126.80307 * 2 1 4 4 C 1.35449 * 103.98667 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.77625 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.47194 * 90.00897 * 5 4 3 7 7 C 1.42902 * 114.00244 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46818 * 179.97438 * 7 6 5 9 9 O 1.21272 * 120.00342 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99701 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00095 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.44962 * 324.96628 * 11 10 8 13 13 C 1.53036 * 109.46312 * 84.93225 * 11 10 8 14 14 C 1.53188 * 109.31939 * 181.38766 * 13 11 10 15 15 N 1.46961 * 108.88586 * 305.44500 * 14 13 11 16 16 C 1.36940 * 120.65216 * 233.53333 * 15 14 13 17 17 H 1.08000 * 119.99735 * 151.72458 * 16 15 14 18 18 C 1.38810 * 120.00075 * 331.72500 * 16 15 14 19 19 N 1.31619 * 119.99689 * 343.18463 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 163.18630 * 18 16 15 21 21 H 1.48509 * 109.47304 * 59.99932 * 20 18 16 22 22 H 1.48501 * 109.47440 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47535 * 299.99868 * 20 18 16 24 24 C 1.46925 * 118.71816 * 53.34938 * 15 14 13 25 25 C 1.53042 * 109.46247 * 204.99682 * 11 10 8 26 26 H 1.08996 * 109.49651 * 298.57058 * 25 11 10 27 27 O 1.42904 * 109.49173 * 58.66313 * 25 11 10 28 28 O 1.34044 * 106.44732 * 0.24795 * 4 3 2 29 29 N 1.20923 * 111.56597 * 359.55785 * 28 4 3 30 30 H 1.09002 * 109.47077 * 89.99713 * 1 2 3 31 31 H 1.09000 * 109.47236 * 210.00062 * 1 2 3 32 32 H 1.08994 * 109.47145 * 329.99704 * 1 2 3 33 33 H 1.08000 * 128.00666 * 359.96796 * 3 2 1 34 34 H 1.08998 * 109.47468 * 330.00921 * 5 4 3 35 35 H 1.09001 * 109.47164 * 210.00845 * 5 4 3 36 36 H 1.08992 * 109.46893 * 59.99761 * 7 6 5 37 37 H 1.08996 * 109.47169 * 299.99903 * 7 6 5 38 38 H 0.97007 * 119.99633 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.49872 * 301.33767 * 13 11 10 40 40 H 1.09001 * 109.50043 * 61.42987 * 13 11 10 41 41 H 1.09007 * 109.58660 * 65.14738 * 14 13 11 42 42 H 1.08995 * 109.59426 * 185.57794 * 14 13 11 43 43 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.59109 * 186.78530 * 24 15 14 45 45 H 1.08999 * 109.58340 * 66.50458 * 24 15 14 46 46 H 0.96705 * 113.99478 * 179.83921 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 0.0006 5 6 4.9021 1.3695 0.0003 6 8 5.3128 1.6114 1.3475 7 6 6.5417 2.3319 1.4601 8 6 6.8762 2.5300 2.9161 9 8 6.1356 2.0963 3.7729 10 7 7.9991 3.1881 3.2660 11 6 8.3247 3.3801 4.6814 12 1 7.4054 3.5260 5.2487 13 6 9.0583 2.1446 5.2081 14 6 9.3664 2.3344 6.6966 15 7 10.1022 3.5942 6.8732 16 6 11.2998 3.6161 7.5369 17 1 12.0375 4.3669 7.2951 18 6 11.5656 2.6732 8.5204 19 7 10.5807 1.9789 9.0497 20 14 13.3211 2.3900 9.0926 21 1 13.8704 3.6529 9.6484 22 1 13.3362 1.3399 10.1425 23 1 14.1523 1.9526 7.9424 24 6 9.5300 4.8294 6.3204 25 6 9.2202 4.6116 4.8361 26 1 10.1501 4.4562 4.2892 27 8 8.5464 5.7595 4.3161 28 8 3.4538 -0.7254 -0.0047 29 7 2.2868 -1.0424 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 2.0710 2.1743 -0.0005 34 1 4.7651 2.3207 -0.5140 35 1 5.6660 0.7856 -0.5131 36 1 6.4391 3.3030 0.9759 37 1 7.3394 1.7676 0.9771 38 1 8.5921 3.5340 2.5806 39 1 8.4292 1.2642 5.0762 40 1 9.9898 2.0124 4.6577 41 1 8.4343 2.3761 7.2603 42 1 9.9744 1.5029 7.0529 43 1 10.7665 1.3203 9.7372 44 1 10.2460 5.6441 6.4285 45 1 8.6118 5.0770 6.8530 46 1 9.0558 6.5787 4.3837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099889727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -40.763993 kcal Electronic energy + Delta-G solvation = -29041.019955 eV Core-core repulsion = 24742.342510 eV Total energy + Delta-G solvation = -4298.677445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.19943 -39.91100 -38.46648 -37.50032 -35.43140 -35.08194 -34.32240 -32.97967 -32.01394 -30.28752 -29.00650 -28.95538 -28.14235 -26.44099 -24.87707 -23.38078 -22.45666 -21.91347 -20.67290 -20.28973 -19.52703 -18.05587 -17.86593 -17.27468 -16.96771 -16.82660 -16.53761 -16.42378 -15.58015 -15.27915 -14.84284 -14.65833 -14.21020 -13.94040 -13.78889 -13.70690 -13.57405 -13.37716 -13.21985 -12.89961 -12.85361 -12.62889 -12.28054 -12.11347 -12.01367 -11.59458 -11.45556 -11.12839 -10.87614 -10.69656 -10.36774 -10.30775 -10.29382 -10.15946 -9.97067 -9.89559 -9.79762 -9.71760 -9.41093 -8.78890 -8.47401 -6.78451 -5.86151 -3.31071 1.01477 1.88812 2.56828 2.75548 2.99939 3.34043 3.40360 3.41138 3.84755 3.88048 4.16876 4.34286 4.48514 4.58243 4.60269 4.78763 4.80042 4.88721 4.95680 4.98615 5.11491 5.17299 5.26363 5.30903 5.41791 5.43776 5.46193 5.52108 5.74223 5.77909 5.94141 6.08627 6.28042 6.45469 6.48188 6.54328 6.65568 6.75329 6.84473 7.27506 7.59125 7.67762 7.71095 7.87642 7.96530 8.36303 8.40029 9.11547 9.73885 10.29921 11.22473 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.001940 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.516129 B =14433.150406 C =15099.895081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.206 4.206 4 C -0.029 4.029 5 C 0.142 3.858 6 O -0.355 6.355 7 C 0.046 3.954 8 C 0.511 3.489 9 O -0.519 6.519 10 N -0.715 5.715 11 C 0.165 3.835 12 H 0.088 0.912 13 C -0.147 4.147 14 C 0.171 3.829 15 N -0.588 5.588 16 C -0.262 4.262 17 H 0.066 0.934 18 C 0.006 3.994 19 N -0.898 5.898 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.121 3.879 25 C 0.080 3.920 26 H 0.057 0.943 27 O -0.571 6.571 28 O 0.109 5.891 29 N -0.360 5.360 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.174 0.826 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.093 0.907 43 H 0.257 0.743 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 2.881 -22.689 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.227 4.227 4 C -0.092 4.092 5 C 0.064 3.936 6 O -0.273 6.273 7 C -0.034 4.034 8 C 0.295 3.705 9 O -0.393 6.393 10 N -0.366 5.366 11 C 0.061 3.939 12 H 0.106 0.894 13 C -0.188 4.188 14 C 0.045 3.955 15 N -0.312 5.312 16 C -0.391 4.391 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.007 4.007 25 C 0.019 3.981 26 H 0.075 0.925 27 O -0.376 6.376 28 O 0.040 5.960 29 N -0.063 5.063 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.192 0.808 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.756 0.604 -21.853 25.310 hybrid contribution 1.713 1.352 -0.058 2.183 sum -11.043 1.955 -21.911 24.614 Atomic orbital electron populations 1.20175 0.85730 1.04050 1.03339 1.23646 0.99219 0.88731 1.03118 1.22490 0.91020 1.01356 1.07870 1.23916 0.97385 0.83910 1.04017 1.20643 0.89922 0.97539 0.85465 1.88113 1.39033 1.76199 1.23974 1.22283 0.87677 0.97571 0.95897 1.20038 0.81558 0.78916 0.90016 1.90761 1.49028 1.48014 1.51516 1.45964 1.23914 1.57519 1.09237 1.21017 0.98821 0.93948 0.80098 0.89371 1.22610 0.99123 0.95868 1.01149 1.20841 0.95858 0.90361 0.88480 1.44026 1.22447 1.00785 1.63899 1.19101 0.91063 1.15435 1.13488 0.91600 1.25091 0.97522 1.00685 0.96067 1.70022 1.29721 1.26879 1.27548 0.86338 0.84438 0.77709 0.78050 1.20820 1.21547 1.20946 1.21520 0.97465 0.91248 0.90467 1.22777 0.93578 0.84651 0.97058 0.92535 1.86478 1.47844 1.18616 1.84647 1.84835 1.21593 1.22546 1.66978 1.73870 0.89289 1.24159 1.18996 0.90138 0.90431 0.89854 0.80829 0.89363 0.90355 0.89910 0.89855 0.77048 0.91837 0.92297 0.95748 0.88873 0.93329 0.92159 0.95317 0.77965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.47 36.01 0.38 -0.12 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.21 -1.90 11.06 -39.38 -0.44 -2.33 16 4 C -0.03 -0.29 7.12 -35.31 -0.25 -0.54 16 5 C 0.14 1.09 6.50 36.00 0.23 1.32 16 6 O -0.36 -4.28 9.86 -55.14 -0.54 -4.82 16 7 C 0.05 0.44 6.42 36.01 0.23 0.67 16 8 C 0.51 7.63 7.87 -10.98 -0.09 7.54 16 9 O -0.52 -10.54 16.16 -14.35 -0.23 -10.77 16 10 N -0.71 -9.91 4.92 -53.77 -0.26 -10.17 16 11 C 0.16 2.89 2.12 -67.89 -0.14 2.74 16 12 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 13 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 14 C 0.17 4.06 5.30 -3.69 -0.02 4.04 16 15 N -0.59 -14.19 3.00 -172.30 -0.52 -14.71 16 16 C -0.26 -6.91 9.58 -15.06 -0.14 -7.05 16 17 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 18 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 19 N -0.90 -25.76 11.20 55.49 0.62 -25.13 16 20 Si 0.91 21.13 29.59 -169.99 -5.03 16.10 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.12 2.40 6.14 -3.71 -0.02 2.38 16 25 C 0.08 1.31 3.15 -26.61 -0.08 1.22 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 O -0.57 -8.03 13.16 -35.23 -0.46 -8.49 16 28 O 0.11 1.34 11.20 17.17 0.19 1.54 16 29 N -0.36 -4.57 12.07 33.43 0.40 -4.16 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.37 3.68 9.08 45.56 0.41 4.09 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -36.10 387.31 -7.28 -43.38 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.10 Total: 4.95 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.18 Total: 6.46 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.24 Total: -54.18 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.05 Total: -22.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.10 -7.28 -43.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099889727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.619 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds